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Volumn 140, Issue , 2008, Pages 89-146

Multiparticle collision dynamics: Simulation of complex systems on mesoscales

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EID: 63849186682     PISSN: 00652385     EISSN: None     Source Type: Book Series    
DOI: 10.1002/9780470371572.ch2     Document Type: Article
Times cited : (453)

References (124)
  • 1
    • 85180865968 scopus 로고
    • University of California Press, Berkeley
    • L. Boltzmann, Lectures on Gas Theory, University of California Press, Berkeley, 1964.
    • (1964) Lectures on Gas Theory
    • Boltzmann, L.1
  • 2
    • 0000937122 scopus 로고
    • Sur la théorie du mouvement brownian
    • P. Langevin, Sur la théorie du mouvement brownian, Comptes Rendus 146, 530 (1908).
    • (1908) Comptes Rendus , vol.146 , pp. 530
    • Langevin, P.1
  • 5
    • 84950109965 scopus 로고
    • Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics
    • P. J. Hoogerbrugge and J. M. V. A. Koelman, Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics, Europhys. Lett. 19, 155 (1992).
    • (1992) Europhys. Lett , vol.19 , pp. 155
    • Hoogerbrugge, P.J.1    Koelman, J.M.V.A.2
  • 6
    • 84956259119 scopus 로고
    • Statistical mechanics of dissipative particle dynamics
    • P. Español and P. Warren, Statistical mechanics of dissipative particle dynamics, Europhys. Lett. 30, 191 (1995).
    • (1995) Europhys. Lett , vol.30 , pp. 191
    • Español, P.1    Warren, P.2
  • 8
    • 0037560562 scopus 로고    scopus 로고
    • M. J. Kotelyanskii and D. N. Theodorou eds, Marcel Dekker, New York
    • M. J. Kotelyanskii and D. N. Theodorou (eds.), Simulation Methods for Polymers, Marcel Dekker, New York, 2004.
    • (2004) Simulation Methods for Polymers
  • 9
    • 9744244459 scopus 로고    scopus 로고
    • M. Karttunen, I. Vattulainen, and A. Lukkarinen eds, Springer-Verlag, Berlin
    • M. Karttunen, I. Vattulainen, and A. Lukkarinen (eds.), Novel Methods in Soft Matter Simulations, Springer-Verlag, Berlin, 2004.
    • (2004) Novel Methods in Soft Matter Simulations
  • 11
    • 0001468477 scopus 로고    scopus 로고
    • Mesoscopic model for solvent dynamics
    • A. Malevanets and R. Kapral, Mesoscopic model for solvent dynamics, J. Chem. Phys. 110, 8605 (1999).
    • (1999) J. Chem. Phys , vol.110 , pp. 8605
    • Malevanets, A.1    Kapral, R.2
  • 12
    • 0032335624 scopus 로고    scopus 로고
    • Continuous-velocity lattice-gas model for fluid flow
    • A. Malevanets and R. Kapral, Continuous-velocity lattice-gas model for fluid flow, Europhys. Lett. 44, 552 (1998).
    • (1998) Europhys. Lett , vol.44 , pp. 552
    • Malevanets, A.1    Kapral, R.2
  • 13
    • 11144309772 scopus 로고    scopus 로고
    • Mesoscopic multi-particle collision model for fluid flow and molecular dynamics
    • M. Karttunen, I. Vattulainen, and A. Lukkarinen eds, Springer-Verlag, Berlin
    • A. Malevanets and R. Kapral, Mesoscopic multi-particle collision model for fluid flow and molecular dynamics, in Novel Methods in Soft Matter Simulations, M. Karttunen, I. Vattulainen, and A. Lukkarinen (eds.), Springer-Verlag, Berlin, 2003, p. 113.
    • (2003) Novel Methods in Soft Matter Simulations , pp. 113
    • Malevanets, A.1    Kapral, R.2
  • 14
    • 4243710928 scopus 로고    scopus 로고
    • Stochastic rotation dynamics: A Galilean-invariant mesoscopic model for fluid flow
    • T. Ihle and D. M. Kroll, Stochastic rotation dynamics: a Galilean-invariant mesoscopic model for fluid flow, Phys. Rev. E 63, 020201(R) (2001).
    • (2001) Phys. Rev. E , vol.63
    • Ihle, T.1    Kroll, D.M.2
  • 15
    • 37649027179 scopus 로고    scopus 로고
    • T. Ihle and D. M. Kroll, Stochastic rotation dynamics. I. Formalism, Galilean invariance, and Green-Kubo relations, Phys. Rev. E 67, 066705 (2003).
    • T. Ihle and D. M. Kroll, Stochastic rotation dynamics. I. Formalism, Galilean invariance, and Green-Kubo relations, Phys. Rev. E 67, 066705 (2003).
  • 16
    • 0034225734 scopus 로고    scopus 로고
    • A particle-based algorithm for the hydrodynamics of binary fluid mixtures
    • A. Malevanets and J. M. Yeomans, A particle-based algorithm for the hydrodynamics of binary fluid mixtures, Comput. Phys. Commun. 129, 282 (2000).
    • (2000) Comput. Phys. Commun , vol.129 , pp. 282
    • Malevanets, A.1    Yeomans, J.M.2
  • 17
    • 2442482407 scopus 로고    scopus 로고
    • Mesoscopic model for diffusion-influenced reaction dynamics
    • K. Tucci and R. Kapral, Mesoscopic model for diffusion-influenced reaction dynamics, J. Chem. Phys. 120, 8262 (2004).
    • (2004) J. Chem. Phys , vol.120 , pp. 8262
    • Tucci, K.1    Kapral, R.2
  • 18
    • 0000989411 scopus 로고    scopus 로고
    • Solute dynamics in a mesoscale solvent
    • A. Malevanets and R. Kapral, Solute dynamics in a mesoscale solvent, J. Chem. Phys. 112, 7260 (2000).
    • (2000) J. Chem. Phys , vol.112 , pp. 7260
    • Malevanets, A.1    Kapral, R.2
  • 19
    • 5744225887 scopus 로고    scopus 로고
    • Low-Reynolds-number hydrodynamics of complex fluids by multi-particle-collision dynamics
    • M. Ripoll, K. Mussawisade, R. G. Winkler, and G. Gompper, Low-Reynolds-number hydrodynamics of complex fluids by multi-particle-collision dynamics, Europhys. Lett. 68, 106 (2004).
    • (2004) Europhys. Lett , vol.68 , pp. 106
    • Ripoll, M.1    Mussawisade, K.2    Winkler, R.G.3    Gompper, G.4
  • 20
    • 27244456170 scopus 로고    scopus 로고
    • Dynamic regimes of fluids simulated by multiparticle-collision dynamics
    • M. Ripoll, K. Mussawisade, R. G. Winkler, and G. Gompper, Dynamic regimes of fluids simulated by multiparticle-collision dynamics, Phys. Rev. E 72, 016701 (2005).
    • (2005) Phys. Rev. E , vol.72 , pp. 016701
    • Ripoll, M.1    Mussawisade, K.2    Winkler, R.G.3    Gompper, G.4
  • 22
    • 33751007543 scopus 로고    scopus 로고
    • Dynamic correlations in stochastic rotation dynamics
    • E. Tüzel, T. Ihle, and D. M. Kroll, Dynamic correlations in stochastic rotation dynamics, Phys. Rev. E 74, 056702 (2006).
    • (2006) Phys. Rev. E , vol.74 , pp. 056702
    • Tüzel, E.1    Ihle, T.2    Kroll, D.M.3
  • 23
    • 42749103819 scopus 로고    scopus 로고
    • Stochastic rotation dynamics. II. Transport coefficients, numerics, and long-time tails
    • T. Ihle and D. M. Kroll, Stochastic rotation dynamics. II. Transport coefficients, numerics, and long-time tails, Phys. Rev. E 67, 066706 (2003).
    • (2003) Phys. Rev. E , vol.67 , pp. 066706
    • Ihle, T.1    Kroll, D.M.2
  • 24
    • 0242495005 scopus 로고    scopus 로고
    • Transport coefficients for stochastic rotation dynamics in three dimensions
    • E. Tüzel, M. Strauss, T. Ihle, and D. M. Kroll, Transport coefficients for stochastic rotation dynamics in three dimensions, Phys. Rev. E 68, 036701 (2003).
    • (2003) Phys. Rev. E , vol.68 , pp. 036701
    • Tüzel, E.1    Strauss, M.2    Ihle, T.3    Kroll, D.M.4
  • 25
    • 42749101817 scopus 로고    scopus 로고
    • Resummed Green-Kubo relations for a fluctuating fluid-particle model
    • T. Ihle, E. Tüzel, and D. M. Kroll, Resummed Green-Kubo relations for a fluctuating fluid-particle model, Phys. Rev. E 70, 035701(R) (2004).
    • (2004) Phys. Rev. E , vol.70
    • Ihle, T.1    Tüzel, E.2    Kroll, D.M.3
  • 26
    • 28844463979 scopus 로고    scopus 로고
    • Equilibrium calculation of transport coefficients for a fluid-particle model
    • T. Ihle, E. Tüzel, and D. M. Kroll, Equilibrium calculation of transport coefficients for a fluid-particle model, Phys. Rev. E 72, 046707 (2005).
    • (2005) Phys. Rev. E , vol.72 , pp. 046707
    • Ihle, T.1    Tüzel, E.2    Kroll, D.M.3
  • 27
    • 33745699128 scopus 로고    scopus 로고
    • Mesoscale simulations: Lattice Boltzmann and particle algorithms
    • J. M. Yeomans, Mesoscale simulations: lattice Boltzmann and particle algorithms, Physica A 369, 159 (2006).
    • (2006) Physica A , vol.369 , pp. 159
    • Yeomans, J.M.1
  • 28
    • 0142026522 scopus 로고    scopus 로고
    • Transport coefficients of a mesoscopic fluid dynamics model
    • N. Kikuchi, C. M. Pooley, J. F. Ryder, and J. M. Yeomans, Transport coefficients of a mesoscopic fluid dynamics model, J. Chem. Phys. 119, 6388 (2003).
    • (2003) J. Chem. Phys , vol.119 , pp. 6388
    • Kikuchi, N.1    Pooley, C.M.2    Ryder, J.F.3    Yeomans, J.M.4
  • 29
    • 17444377191 scopus 로고    scopus 로고
    • Kinetic theory derivation of the transport coefficients of stochastic rotation dynamics
    • C. M. Pooley and J. M. Yeomans, Kinetic theory derivation of the transport coefficients of stochastic rotation dynamics, J. Phys. Chem. B 109, 6505 (2005).
    • (2005) J. Phys. Chem. B , vol.109 , pp. 6505
    • Pooley, C.M.1    Yeomans, J.M.2
  • 30
    • 37649031657 scopus 로고    scopus 로고
    • Mesoscopic solvent simulations: Multiparticle-collision dynamics of three-dimensional flows
    • E. Allahyarov and G. Gompper, Mesoscopic solvent simulations: multiparticle-collision dynamics of three-dimensional flows, Phys. Rev. E 66, 036702 (2002).
    • (2002) Phys. Rev. E , vol.66 , pp. 036702
    • Allahyarov, E.1    Gompper, G.2
  • 31
    • 0036950193 scopus 로고    scopus 로고
    • Numerical study of the flow around a cylinder using multi-particle collision dynamics
    • A. Lamura and G. Gompper, Numerical study of the flow around a cylinder using multi-particle collision dynamics, Eur. Phys. J. 9, 477 (2002).
    • (2002) Eur. Phys. J , vol.9 , pp. 477
    • Lamura, A.1    Gompper, G.2
  • 32
    • 54749116478 scopus 로고    scopus 로고
    • M. von Smoluchowski, Über Brownsche Molekularbewegung unter Einwirkung äusserer Kräfte und deren Zusammenhang mit der verallgemeinerten Diffusionsgleichung, Ann. Phys. 48, 1103 (1915); Zusammenfassende bearbeitungen, Phys. Z. 17, 557 (1916).
    • M. von Smoluchowski, Über Brownsche Molekularbewegung unter Einwirkung äusserer Kräfte und deren Zusammenhang mit der verallgemeinerten Diffusionsgleichung, Ann. Phys. 48, 1103 (1915); Zusammenfassende bearbeitungen, Phys. Z. 17, 557 (1916).
  • 35
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • D. T. Gillespie, Exact stochastic simulation of coupled chemical reactions, J. Phys. Chem. 81, 2340 (1977).
    • (1977) J. Phys. Chem , vol.81 , pp. 2340
    • Gillespie, D.T.1
  • 36
    • 18244404300 scopus 로고    scopus 로고
    • Simulating biochemical networks at the particle level and in time and space: Green's function reaction dynamics
    • J. S. van Zon and P. R. ten Wolde, Simulating biochemical networks at the particle level and in time and space: Green's function reaction dynamics, Phys. Rev. Lett. 94, 128103 (2005).
    • (2005) Phys. Rev. Lett , vol.94 , pp. 128103
    • van Zon, J.S.1    ten Wolde, P.R.2
  • 37
    • 33747829956 scopus 로고    scopus 로고
    • Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli
    • J. V. Rodríguez, J. A. Kaandorp,M. Dobrzyński, and J. K. Blom, Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli, Bioinformatics 22, 1895 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1895
    • Rodríguez, J.V.1    Kaandorp, J.A.2    Dobrzyński, M.3    Blom, J.K.4
  • 38
    • 33748977501 scopus 로고    scopus 로고
    • A systematic investigation of the rate laws valid in intracellular environments
    • R. Grima and S. Schnell, A systematic investigation of the rate laws valid in intracellular environments, Biophys. Chem. 124, 1 (2006).
    • (2006) Biophys. Chem , vol.124 , pp. 1
    • Grima, R.1    Schnell, S.2
  • 39
    • 28144442450 scopus 로고    scopus 로고
    • Mesoscopic multiparticle collision dynamics of reaction-diffusion fronts
    • K. Tucci and R. Kapral, Mesoscopic multiparticle collision dynamics of reaction-diffusion fronts, J. Phys. Chem. B 109, 21300 (2005).
    • (2005) J. Phys. Chem. B , vol.109 , pp. 21300
    • Tucci, K.1    Kapral, R.2
  • 40
    • 0034596580 scopus 로고    scopus 로고
    • Dynamics of short polymer chains in solution
    • A. Malevanets and J. M. Yeomans, Dynamics of short polymer chains in solution, Europhys. Lett. 52, 231 (2000).
    • (2000) Europhys. Lett , vol.52 , pp. 231
    • Malevanets, A.1    Yeomans, J.M.2
  • 41
    • 33748666643 scopus 로고    scopus 로고
    • Hydrodynamic interactions and Brownian forces in colloidal suspensions: Coarse-graining over time and length scales
    • J. T. Padding and A. A. Louis, Hydrodynamic interactions and Brownian forces in colloidal suspensions: coarse-graining over time and length scales, Phys. Rev. E 74, 031402 (2006).
    • (2006) Phys. Rev. E , vol.74 , pp. 031402
    • Padding, J.T.1    Louis, A.A.2
  • 43
    • 84890506631 scopus 로고
    • Life at low Reynolds number
    • E. Purcell, Life at low Reynolds number, Am. J. Phys. 45, 3 (1977).
    • (1977) Am. J. Phys , vol.45 , pp. 3
    • Purcell, E.1
  • 44
    • 0000514837 scopus 로고
    • Transport collective motion and Brownian motion
    • H. Mori, Transport collective motion and Brownian motion, Prog. Theor. Phys. 33, 423 (1965).
    • (1965) Prog. Theor. Phys , vol.33 , pp. 423
    • Mori, H.1
  • 45
    • 0002927899 scopus 로고
    • Molecular theory of Brownian motion
    • P. Mazur and I. Oppenheim, Molecular theory of Brownian motion, Physica 50, 241 (1970).
    • (1970) Physica , vol.50 , pp. 241
    • Mazur, P.1    Oppenheim, I.2
  • 46
    • 0002121327 scopus 로고
    • Stochastic problems in physics and astronomy
    • S. Chandrasekhar, Stochastic problems in physics and astronomy, Rev. Mod. Phys. 15, 1 (1943).
    • (1943) Rev. Mod. Phys , vol.15 , pp. 1
    • Chandrasekhar, S.1
  • 47
    • 0004449627 scopus 로고
    • Statistical-mechanical theory of Brownian motion - translational motion in an equilibrium fluid
    • M. Tokuyama and I. Oppenheim, Statistical-mechanical theory of Brownian motion - translational motion in an equilibrium fluid, Physica A 94, 501 (1978).
    • (1978) Physica A , vol.94 , pp. 501
    • Tokuyama, M.1    Oppenheim, I.2
  • 48
    • 12344271673 scopus 로고
    • Statistical-mechanical theory of irreversible processes. 1. General theory and simple applications to magnetic and conduction problems
    • R. Kubo, Statistical-mechanical theory of irreversible processes. 1. General theory and simple applications to magnetic and conduction problems, J. Phys. Soc. Japan 12, 570 (1957);
    • (1957) J. Phys. Soc. Japan , vol.12 , pp. 570
    • Kubo, R.1
  • 49
    • 33847327575 scopus 로고
    • The fluctuation-dissipation theorem
    • R. Kubo, The fluctuation-dissipation theorem, Rep. Prog. Phys. 29, 255 (1966).
    • (1966) Rep. Prog. Phys , vol.29 , pp. 255
    • Kubo, R.1
  • 50
    • 36449002509 scopus 로고
    • Force autocorrelation function in Brownian motion theory
    • P. Español and I. Zúñiga, Force autocorrelation function in Brownian motion theory, J. Chem. Phys. 98, 574 (1993).
    • (1993) J. Chem. Phys , vol.98 , pp. 574
    • Español, P.1    Zúñiga, I.2
  • 51
    • 0038515360 scopus 로고    scopus 로고
    • Determination of the friction coefficient of a Brownian particle by molecular-dynamics simulation
    • F. Ould-Kaddour and D. Levesque, Determination of the friction coefficient of a Brownian particle by molecular-dynamics simulation, J. Chem. Phys. 118, 7888 (2003).
    • (2003) J. Chem. Phys , vol.118 , pp. 7888
    • Ould-Kaddour, F.1    Levesque, D.2
  • 52
    • 11144273347 scopus 로고    scopus 로고
    • Friction and diffusion of a Brownian particle in a mesoscopic solvent
    • S. H. Lee and R. Kapral, Friction and diffusion of a Brownian particle in a mesoscopic solvent, J. Chem. Phys. 22, 11163 (2004).
    • (2004) J. Chem. Phys , vol.22 , pp. 11163
    • Lee, S.H.1    Kapral, R.2
  • 53
    • 33645725668 scopus 로고
    • Molecular theory of translational diffusion: Microscopic generalization of the normal velocity boundary condition
    • J. T. Hynes, R. Kapral, and M. Weinberg, Molecular theory of translational diffusion: microscopic generalization of the normal velocity boundary condition, J. Chem. Phys. 70, 1456 (1970).
    • (1970) J. Chem. Phys , vol.70 , pp. 1456
    • Hynes, J.T.1    Kapral, R.2    Weinberg, M.3
  • 54
    • 0035452080 scopus 로고    scopus 로고
    • Cluster structure and dynamics in a mesoscopic solvent
    • S. H. Lee and R. Kapral, Cluster structure and dynamics in a mesoscopic solvent, Physica A 298, 56 (2001).
    • (2001) Physica A , vol.298 , pp. 56
    • Lee, S.H.1    Kapral, R.2
  • 56
    • 0001808747 scopus 로고
    • On the theory of concentrated hard-sphere suspensions
    • M. Tokuyama and I. Oppenheim, On the theory of concentrated hard-sphere suspensions, Physica A 216, 85 (1995).
    • (1995) Physica A , vol.216 , pp. 85
    • Tokuyama, M.1    Oppenheim, I.2
  • 59
    • 0000274247 scopus 로고
    • Molecular theory of Brownian motion for several particles
    • J. M. Deutch and I. Oppenheim, Molecular theory of Brownian motion for several particles, J. Chem. Phys. 54, 3547 (1971).
    • (1971) J. Chem. Phys , vol.54 , pp. 3547
    • Deutch, J.M.1    Oppenheim, I.2
  • 60
    • 21244457194 scopus 로고    scopus 로고
    • S. H. Lee and R. Kapral, Two-particle friction in a mesoscopic solvent, J. Chem. Phys. 122, 2149016 (2005).
    • S. H. Lee and R. Kapral, Two-particle friction in a mesoscopic solvent, J. Chem. Phys. 122, 2149016 (2005).
  • 61
    • 33746894143 scopus 로고    scopus 로고
    • Shear viscosity of claylike colloids in computer simulations and experiments
    • M. Hecht, J. Harting, M. Bier, J. Reinshagen, and H. J. Herrmann, Shear viscosity of claylike colloids in computer simulations and experiments, Phys. Rev. E 74, 021403 (2006).
    • (2006) Phys. Rev. E , vol.74 , pp. 021403
    • Hecht, M.1    Harting, J.2    Bier, M.3    Reinshagen, J.4    Herrmann, H.J.5
  • 63
    • 42749099367 scopus 로고    scopus 로고
    • Hydrodynamic and Brownian fluctuations in sedimenting suspensions
    • J. T. Padding and A. A. Louis, Hydrodynamic and Brownian fluctuations in sedimenting suspensions, Phys. Rev. Lett. 93, 220601 (2004).
    • (2004) Phys. Rev. Lett , vol.93 , pp. 220601
    • Padding, J.T.1    Louis, A.A.2
  • 64
    • 2642574314 scopus 로고    scopus 로고
    • Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions
    • E. Falck, J. M. Lahtinen, I. Vattulainen, and T. Ala-Nissila, Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions, Eur. Phys. J. E 13, 267 (2004).
    • (2004) Eur. Phys. J. E , vol.13 , pp. 267
    • Falck, E.1    Lahtinen, J.M.2    Vattulainen, I.3    Ala-Nissila, T.4
  • 65
    • 0036103074 scopus 로고    scopus 로고
    • Development of a simulation model for solid objects suspended in a fluctuating fluid
    • Y. Inoue, Y. Chen, and H. Ohashi, Development of a simulation model for solid objects suspended in a fluctuating fluid, J. Stat. Phys. 107, 85 (2002).
    • (2002) J. Stat. Phys , vol.107 , pp. 85
    • Inoue, Y.1    Chen, Y.2    Ohashi, H.3
  • 66
    • 33750446297 scopus 로고    scopus 로고
    • Dynamics of vesicle self-assembly and dissolution
    • H. Noguchi and G. Gompper, Dynamics of vesicle self-assembly and dissolution, J. Chem. Phys. 125, 164908 (2006).
    • (2006) J. Chem. Phys , vol.125 , pp. 164908
    • Noguchi, H.1    Gompper, G.2
  • 67
    • 33344456459 scopus 로고    scopus 로고
    • Meshless membrane model based on the moving least-squares method
    • H. Noguchi and G. Gompper, Meshless membrane model based on the moving least-squares method, Phys. Rev. E 73, 021903 (2006).
    • (2006) Phys. Rev. E , vol.73 , pp. 021903
    • Noguchi, H.1    Gompper, G.2
  • 68
    • 26444614204 scopus 로고    scopus 로고
    • Shape transitions of fluid vesicles and red blood cells in capillary flows
    • H. Noguchi and G. Gompper, Shape transitions of fluid vesicles and red blood cells in capillary flows, Proc. Natl. Acad. Sci. USA 102, 14159 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 14159
    • Noguchi, H.1    Gompper, G.2
  • 69
    • 27244436915 scopus 로고    scopus 로고
    • Dynamics of fluid vesicles in shear flow: Effect of membrane viscosity and thermal fluctuations
    • H. Noguchi and G. Gompper, Dynamics of fluid vesicles in shear flow: effect of membrane viscosity and thermal fluctuations, Phys. Rev. E 72, 011901 (2005).
    • (2005) Phys. Rev. E , vol.72 , pp. 011901
    • Noguchi, H.1    Gompper, G.2
  • 70
    • 42749103850 scopus 로고    scopus 로고
    • Fluid vesicles with viscous membranes in shear flow
    • H. Noguchi and G. Gompper, Fluid vesicles with viscous membranes in shear flow, Phys. Rev. Lett. 93, 258102 (2004).
    • (2004) Phys. Rev. Lett , vol.93 , pp. 258102
    • Noguchi, H.1    Gompper, G.2
  • 75
    • 0343417367 scopus 로고
    • Dynamics of entangled linear polymer melts: A molecular-dynamics simulation
    • K. Kremer and G. S. Grest, Dynamics of entangled linear polymer melts: a molecular-dynamics simulation, J. Chem. Phys. 92, 5057 (1990).
    • (1990) J. Chem. Phys , vol.92 , pp. 5057
    • Kremer, K.1    Grest, G.S.2
  • 76
    • 26944436625 scopus 로고    scopus 로고
    • Dynamics of polymers in a particle-based mesoscopic solvent
    • K. Mussawisade, M. Ripoll, R. G. Winkler, and G. Gompper, Dynamics of polymers in a particle-based mesoscopic solvent, J. Chem. Phys. 123, 144905 (2005).
    • (2005) J. Chem. Phys , vol.123 , pp. 144905
    • Mussawisade, K.1    Ripoll, M.2    Winkler, R.G.3    Gompper, G.4
  • 77
    • 22944457523 scopus 로고    scopus 로고
    • Dynamics and scaling of polymers in a dilute solution: Analytical treatment in two and higher dimensions
    • O. Punkkinen, E. Falck, and I. Vattulainen, Dynamics and scaling of polymers in a dilute solution: analytical treatment in two and higher dimensions, J. Chem. Phys. 122, 094904 (2005).
    • (2005) J. Chem. Phys , vol.122 , pp. 094904
    • Punkkinen, O.1    Falck, E.2    Vattulainen, I.3
  • 78
    • 0942289309 scopus 로고    scopus 로고
    • Dynamics and scaling of two-dimensional polymers in a dilute solution
    • E. Falck, O. Punkkinen, I. Vattulainen, and T. Ala-Nissila, Dynamics and scaling of two-dimensional polymers in a dilute solution, Phys. Rev. E 68, 050102 (2003).
    • (2003) Phys. Rev. E , vol.68 , pp. 050102
    • Falck, E.1    Punkkinen, O.2    Vattulainen, I.3    Ala-Nissila, T.4
  • 79
    • 0002431511 scopus 로고
    • Problems of the statistical thermodynamics of dilute polymer solutions
    • W. H. Stockmayer, Problems of the statistical thermodynamics of dilute polymer solutions, Makromol. Chem. 35, 54 (1960).
    • (1960) Makromol. Chem , vol.35 , pp. 54
    • Stockmayer, W.H.1
  • 80
    • 0022098302 scopus 로고
    • Kinetics of collapse for a flexible coil
    • P.-G. de Gennes, Kinetics of collapse for a flexible coil, J. Phys. Lett. 46, L639 (1985).
    • (1985) J. Phys. Lett , vol.46
    • de Gennes, P.-G.1
  • 81
    • 0000422291 scopus 로고
    • The role of topological constraints in the kinetics of collapse of macromolecules
    • A. Yu. Grosberg, S. K. Nechaev, and E. I. Shakhnovich, The role of topological constraints in the kinetics of collapse of macromolecules, J. Phys. France 49, 2095 (1988).
    • (1988) J. Phys. France , vol.49 , pp. 2095
    • Grosberg, A.Y.1    Nechaev, S.K.2    Shakhnovich, E.I.3
  • 82
    • 0001176402 scopus 로고    scopus 로고
    • Early stages of homopolymer collapse
    • A. Halperin and P. M. Goldbart, Early stages of homopolymer collapse, Phys. Rev. E 61, 565 (2000).
    • (2000) Phys. Rev. E , vol.61 , pp. 565
    • Halperin, A.1    Goldbart, P.M.2
  • 83
    • 0001383581 scopus 로고    scopus 로고
    • Kinetics of a homopolymer collapse: Beyond the Rouse-Zimm scaling
    • L. I. Klushin, Kinetics of a homopolymer collapse: beyond the Rouse-Zimm scaling, J. Chem. Phys. 108, 7917 (1998).
    • (1998) J. Chem. Phys , vol.108 , pp. 7917
    • Klushin, L.I.1
  • 84
    • 34547853743 scopus 로고    scopus 로고
    • Mesoscopic description of solvent effects on polymer dynamics
    • S. H. Lee and R. Kapral, Mesoscopic description of solvent effects on polymer dynamics, J. Chem. Phys. 124, 214901 (2006).
    • (2006) J. Chem. Phys , vol.124 , pp. 214901
    • Lee, S.H.1    Kapral, R.2
  • 85
    • 27944502464 scopus 로고    scopus 로고
    • Kinetics of the polymer collapse transition: The role of hydrodynamics
    • N. Kikuchi, J. F. Ryder, C. M. Pooley, and J. M. Yeomans, Kinetics of the polymer collapse transition: the role of hydrodynamics, Phys. Rev. E 71, 061804 (2005).
    • (2005) Phys. Rev. E , vol.71 , pp. 061804
    • Kikuchi, N.1    Ryder, J.F.2    Pooley, C.M.3    Yeomans, J.M.4
  • 86
    • 0036769906 scopus 로고    scopus 로고
    • Polymer collapse in the presence of hydrodynamic interactions
    • N. Kikuchi, A. Gent, and J. M. Yeomans, Polymer collapse in the presence of hydrodynamic interactions, Eur. Phys. J. E 9, 63 (2002).
    • (2002) Eur. Phys. J. E , vol.9 , pp. 63
    • Kikuchi, N.1    Gent, A.2    Yeomans, J.M.3
  • 87
    • 5144221805 scopus 로고    scopus 로고
    • Rod-like colloids and polymers in shear flow: A multi-particle-collision dynamics study
    • S
    • R. G.Winkler, K. Mussawisade, M. Ripoll, and G. Gompper, Rod-like colloids and polymers in shear flow: a multi-particle-collision dynamics study, J. Phys. Condens. Matter 16, S3941 (2004).
    • (2004) J. Phys. Condens. Matter , vol.16 , pp. 3941
    • Winkler, R.G.1    Mussawisade, K.2    Ripoll, M.3    Gompper, G.4
  • 88
    • 33744984428 scopus 로고    scopus 로고
    • Modeling a tethered polymer in Poiseuille flow
    • M. A. Webster and J. M. Yeomans, Modeling a tethered polymer in Poiseuille flow, J. Chem. Phys. 122, 164903 (2005).
    • (2005) J. Chem. Phys , vol.122 , pp. 164903
    • Webster, M.A.1    Yeomans, J.M.2
  • 89
    • 33845313012 scopus 로고    scopus 로고
    • Shear thinning in dilute polymer solutions
    • J. F. Ryder and J. M. Yeomans, Shear thinning in dilute polymer solutions, J. Chem. Phys. 125, 194906 (2006).
    • (2006) J. Chem. Phys , vol.125 , pp. 194906
    • Ryder, J.F.1    Yeomans, J.M.2
  • 91
    • 29244453658 scopus 로고    scopus 로고
    • Polymer translocation: The effect of backflow
    • I. Ali and J. M. Yeomans, Polymer translocation: the effect of backflow, J. Chem. Phys. 123, 234903 (2005).
    • (2005) J. Chem. Phys , vol.123 , pp. 234903
    • Ali, I.1    Yeomans, J.M.2
  • 92
    • 33646920317 scopus 로고    scopus 로고
    • Polymer packaging and ejection in viral capsids: Shape matters
    • I. Ali, D. Marenduzzo, and J. M. Yeomans, Polymer packaging and ejection in viral capsids: shape matters, Phys. Rev. Lett. 96, 208102 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 208102
    • Ali, I.1    Marenduzzo, D.2    Yeomans, J.M.3
  • 94
    • 0141902430 scopus 로고
    • Diffusion-controlled reaction rates
    • F. C. Collins and G. E. Kimball, Diffusion-controlled reaction rates, J. Colloid Sci. 4, 425 (1949).
    • (1949) J. Colloid Sci , vol.4 , pp. 425
    • Collins, F.C.1    Kimball, G.E.2
  • 95
    • 0002249610 scopus 로고
    • Kinetic theory of chemical reactions in liquids
    • R. Kapral, Kinetic theory of chemical reactions in liquids, Adv. Chem. Phys. 48, 71 (1981).
    • (1981) Adv. Chem. Phys , vol.48 , pp. 71
    • Kapral, R.1
  • 96
    • 36749119016 scopus 로고
    • Concentration dependence of the rate of diffusion-controlled reactions
    • B. U. Felderhof and J. M. Deutch, Concentration dependence of the rate of diffusion-controlled reactions, J. Chem. Phys. 64, 4551 (1976).
    • (1976) J. Chem. Phys , vol.64 , pp. 4551
    • Felderhof, B.U.1    Deutch, J.M.2
  • 97
    • 0042831558 scopus 로고
    • Diffusion-controlled processes among partially absorbing stationary sinks
    • J. Lebenhaft and R. Kapral, Diffusion-controlled processes among partially absorbing stationary sinks, J. Stat. Phys. 20, 25 (1979).
    • (1979) J. Stat. Phys , vol.20 , pp. 25
    • Lebenhaft, J.1    Kapral, R.2
  • 99
    • 0020184671 scopus 로고
    • How crowded is the cytoplasm?
    • A. B. Fulton, How crowded is the cytoplasm? Cell 30, 345 (1982).
    • (1982) Cell , vol.30 , pp. 345
    • Fulton, A.B.1
  • 100
    • 0032079008 scopus 로고    scopus 로고
    • Biophysical compensation mechanisms buffering E. coli protein-nucleic acid interactions against changing environments
    • M. T. Record, Jr., E. S. Courtenay, S. Caley, and H. J. Guttman, Biophysical compensation mechanisms buffering E. coli protein-nucleic acid interactions against changing environments, Trends Biochem. Sci. 23, 190 (1998).
    • (1998) Trends Biochem. Sci , vol.23 , pp. 190
    • Record Jr., M.T.1    Courtenay, E.S.2    Caley, S.3    Guttman, H.J.4
  • 101
    • 0028783880 scopus 로고
    • An early look at macromolecular crowding
    • T. C. Laurent, An early look at macromolecular crowding, Biophys. Chem. 57, 7 (1995).
    • (1995) Biophys. Chem , vol.57 , pp. 7
    • Laurent, T.C.1
  • 102
    • 0027318513 scopus 로고
    • Macromolecular crowding: Biochemical, biophysical, and physiological consequences
    • S. B. Zimmerman and A. P. Minton, Macromolecular crowding: biochemical, biophysical, and physiological consequences, Annu. Rev. Biophys. Biomol. Struct. 22, 27 (1993).
    • (1993) Annu. Rev. Biophys. Biomol. Struct , vol.22 , pp. 27
    • Zimmerman, S.B.1    Minton, A.P.2
  • 103
    • 0035815743 scopus 로고    scopus 로고
    • The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media
    • A. P. Minton, The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media, J. Biol. Chem. 276, 10577 (2001).
    • (2001) J. Biol. Chem , vol.276 , pp. 10577
    • Minton, A.P.1
  • 104
    • 0023375957 scopus 로고
    • Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3T3 cells
    • K. Luby-Phelps, P. E. Castle, D. L. Taylor, and F. Lanni, Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3T3 cells, Proc. Natl. Acad. Sci. USA 84, 4910 (1987).
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4910
    • Luby-Phelps, K.1    Castle, P.E.2    Taylor, D.L.3    Lanni, F.4
  • 105
    • 0000728710 scopus 로고
    • The cytoplasmic matrix: Its volume and surface area and the diffusion of molecules through it
    • N. D. Gersohn, K. R. Porter, and B. L. Trus, The cytoplasmic matrix: its volume and surface area and the diffusion of molecules through it, Proc. Natl. Acad. Sci. USA 82, 5030 (1985).
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 5030
    • Gersohn, N.D.1    Porter, K.R.2    Trus, B.L.3
  • 106
    • 2442543316 scopus 로고    scopus 로고
    • Reaction kinetics in intracellular environments with macromolecular crowding: Simulations and rate laws
    • S. Schnell and T. E. Turner, Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws, Prog. Biophys. Mol. Biol. 85, 235 (2004).
    • (2004) Prog. Biophys. Mol. Biol , vol.85 , pp. 235
    • Schnell, S.1    Turner, T.E.2
  • 107
    • 0041931122 scopus 로고    scopus 로고
    • Macromolecular crowding: Qualitative and semiquantitative successes, quantitative challenges
    • D. Hall and A. P. Minton, Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges, Biochim. Biophys. Acta (Proteins Proteomics) 1649, 127 (2003).
    • (2003) Biochim. Biophys. Acta (Proteins Proteomics) , vol.1649 , pp. 127
    • Hall, D.1    Minton, A.P.2
  • 109
    • 27744585050 scopus 로고    scopus 로고
    • Motility of catalytic nanoparticles through self-generated forces
    • W. F. Paxton, A. Sen, and T. E. Mallouk, Motility of catalytic nanoparticles through self-generated forces, Chem. Eur. J. 11, 6462 (2005).
    • (2005) Chem. Eur. J , vol.11 , pp. 6462
    • Paxton, W.F.1    Sen, A.2    Mallouk, T.E.3
  • 113
    • 0036179557 scopus 로고    scopus 로고
    • Brownian motors: Noisy transport far from equilibrium
    • P. Reimann, Brownian motors: noisy transport far from equilibrium, Phys. Rep. 361, 57 (2002).
    • (2002) Phys. Rep , vol.361 , pp. 57
    • Reimann, P.1
  • 114
    • 19544389476 scopus 로고    scopus 로고
    • Microscopic analysis of a thermal Brownian motor
    • C. Van den Broeck, R. Kawai, and P. Meurs, Microscopic analysis of a thermal Brownian motor, Phys. Rev. Lett. 93, 090601 (2004).
    • (2004) Phys. Rev. Lett , vol.93 , pp. 090601
    • Van den Broeck, C.1    Kawai, R.2    Meurs, P.3
  • 115
    • 37649029226 scopus 로고    scopus 로고
    • Simple swimmer at low Reynolds number: Three linked spheres
    • A. Najafi and R. Golestanian, Simple swimmer at low Reynolds number: three linked spheres, Phys. Rev. E 69, 062901 (2004).
    • (2004) Phys. Rev. E , vol.69 , pp. 062901
    • Najafi, A.1    Golestanian, R.2
  • 116
    • 27744589083 scopus 로고    scopus 로고
    • Propulsion of a molecular machine by asymmetric distribution of reaction products
    • R. Golestanian, T. B. Liverpool, and A. Ajdari, Propulsion of a molecular machine by asymmetric distribution of reaction products, Phys. Rev. Lett. 94, 220801 (2005).
    • (2005) Phys. Rev. Lett , vol.94 , pp. 220801
    • Golestanian, R.1    Liverpool, T.B.2    Ajdari, A.3
  • 118
    • 34247092080 scopus 로고    scopus 로고
    • Chemically powered nanodimers
    • G. Rückner and R. Kapral, Chemically powered nanodimers, Phys. Rev. Lett. 98, 150603 (2007).
    • (2007) Phys. Rev. Lett , vol.98 , pp. 150603
    • Rückner, G.1    Kapral, R.2
  • 119
    • 33644968108 scopus 로고    scopus 로고
    • Consistent particle-based algorithm with a non-ideal equation of state
    • T. Ihle, E. Tüzel, and D. M. Kroll, Consistent particle-based algorithm with a non-ideal equation of state, Europhys. Lett. 73, 664 (2006).
    • (2006) Europhys. Lett , vol.73 , pp. 664
    • Ihle, T.1    Tüzel, E.2    Kroll, D.M.3
  • 120
    • 34250089909 scopus 로고
    • Immiscible cellular-automaton fluids
    • D. H. Rothman and J. M. Keller, Immiscible cellular-automaton fluids, J. Stat. Phys. 52, 1119 (1988).
    • (1988) J. Stat. Phys , vol.52 , pp. 1119
    • Rothman, D.H.1    Keller, J.M.2
  • 121
    • 13844275087 scopus 로고    scopus 로고
    • A mesoscopic simulation model for immiscible multiphase fluids
    • Y. Inoue, Y. Chen, and H. Ohashi, A mesoscopic simulation model for immiscible multiphase fluids, J. Comput. Phys. 201, 191 (2004).
    • (2004) J. Comput. Phys , vol.201 , pp. 191
    • Inoue, Y.1    Chen, Y.2    Ohashi, H.3
  • 123
    • 37649029053 scopus 로고    scopus 로고
    • Real-coded lattice gas model for ternary amphiphilic fluids
    • T. Sakai, Y. Chen, and H. Ohashi, Real-coded lattice gas model for ternary amphiphilic fluids, Phys. Rev. E 65, 031503 (2002).
    • (2002) Phys. Rev. E , vol.65 , pp. 031503
    • Sakai, T.1    Chen, Y.2    Ohashi, H.3
  • 124
    • 33646779153 scopus 로고    scopus 로고
    • A mesoscopic simulation study of distributions of droplets in a bifurcating channel
    • Y. Inoue, S. Takagi, and Y. Matsumoto, A mesoscopic simulation study of distributions of droplets in a bifurcating channel, Comp. Fluids 35, 971 (2006).
    • (2006) Comp. Fluids , vol.35 , pp. 971
    • Inoue, Y.1    Takagi, S.2    Matsumoto, Y.3


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