Analysis of the nicotiana tabacum stigma/style transcriptome reveals gene expression differences between wet and dry stigma species

Plant Physiology

Volumn 149, Issue 3, 2009, Pages 1211-1230

  Quiapim, Andréa C ^a   Brito, Michael S ^a,b,c   Bernardes, Luciano A S ^b   DaSilva, Idalete ^a,c   Malavazi, Iran ^b   DePaoli, Henrique C ^a,b   Molfetta Machado, Jeanne B ^a   Giuliatti, Silvana ^b   Goldman, Gustavo H ^b   Goldman, Maria Helena S ^a  

^a Ciências E Letras De Ribeira o Preto   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; NICOTIANA TABACUM;

EID: 63549089276     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.108.131573     Document Type: Article

References (66)

1. Aarts MG, Keijzer CJ, Stiekema WJ, Pereira A (1995) Molecular characterization of the CER1 gene of Arabidopsis involved in epicuticular wax biosynthesis and pollen fertility. Plant Cell 7: 2115-2127
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
3. Andersen CL, Jensen JL, Orntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250
4. Atkinson AH, Heath RL, Simpson RJ, Clarke AE, Anderson MA (1993) Proteinase inhibitors in Nicotiana alata stigmas are derived from a precursor protein which is processed into five homologous inhibitors. Plant Cell 5: 203-213
5. Bendtsen JD, Nielsen H, von Heijne G, Brunak S (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783-795
6. Buchanan BB, Gruissem W, Jones RL (2000) Biochemistry and Molecular Biology of Plants. American Society of Plant Physiologists, Rockville, MD, pp 32-37
7. Cecchetti V, Pomponi M, Altamura MM, PezzottiM,Marsilio S, D'Angeli S, Tornielli GB, Costantino P, Cardarelli M (2004) Expression of rolB in tobacco flowers affects the coordinated processes of anther dehiscence and style elongation. Plant J 38: 512-525
8. Chen CG, Mau SL, Clarke AE (1993) Nucleotide sequence and stylespecific expression of a novel proline-rich protein gene from Nicotiana alata. Plant Mol Biol 21: 391-395
9. Chen Y, PeumansWJ, Hause B, Bras J, Kumar M, Proost P, Barre A, Rouge P, Van Damme EJ (2002) Jasmonic acid methyl ester induces the synthesis of a cytoplasmic/nuclear chito-oligosaccharide binding lectin in tobacco leaves. FASEB J 16: 905-907
10. Cheung AY, May B, Kawata EE, Gu Q, Wu HM (1993) Characterization of cDNAs for stylar transmitting tissue-specific proline-rich proteins in tobacco. Plant J 3: 151-160
11. Cheung AY, Wang H, Wu HM (1995) A floral transmitting tissue-specific glycoprotein attracts pollen tubes and stimulates their growth. Cell 82: 383-393
12. Cheung AY, Wu HM (1999) Arabinogalactan proteins in plant sexual reproduction. Protoplasma 208: 87-98
13. Cheung AY, Wu HM, di Stilio V, Glaven R, Chen C, Wong E, Ogdahl J, Estavillo A (2000) Pollen-pistil interactions in Nicotiana tabacum. Ann Bot (Lond) (Suppl A) 85: 29-37
14. Crawford BC, Ditta G, Yanofsky MF (2007) The NTT gene is required for transmitting-tract development in carpels of Arabidopsis thaliana. Curr Biol 17: 1101-1108
15. Cresti M, Keijzer CJ, Ciampolini F, Focardi S (1986) Stigma of Nicotiana: ultrastructural and biochemical studies. Am J Bot 73: 1713-1722
16. Cruz-Garcia F, Nathan Hancock C, Kim D, McClure B (2005) Stylar glycoproteins bind to S-RNase in vitro. Plant J 42: 295-304
17. Dean C, Van der Elzen P, Tamaki S, Dunsmuir P, Bedbrook J (1985) Differential expression of the eight genes of the petunia ribulose bisphosphate carboxylase small subunit multi-gene family. EMBO J 4: 3055-3061
18. de Graaf BHJ, Knuiman BA, Derksen J,Mariani C (2003) Characterization and localization of the transmitting tissue-specific PELPIII proteins of Nicotiana tabacum. J Exp Bot 54: 55-63
19. Du H, Simpson RJ, Clarke AE, Bacic A (1996) Molecular characterization of a stigma-specific gene encoding an arabinogalactan-protein (AGP) from Nicotiana alata. Plant J 9: 313-323
20. Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP, and related tools. Nat Protocols 2: 953-971
21. Ewing B, Green P (1998) Base calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res 8: 186-194
22. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8: 175-185
23. Ferra'ndiz C, Pelaz S, Yanofsky MF (1999) Control of carpel development and fruit development in Arabidopsis. Annu Rev Biochem 68: 321-354
24. Goldman MH, Goldberg RB, Mariani C (1994) Female sterile tobacco plants are produced by stigma-specific cell ablation. EMBO J 13: 2976-2984
25. Goldman MH, Pezzotti M, Seurinck J, Mariani C (1992) Developmental expression of tobacco pistil-specific genes encoding novel extensin-like proteins. Plant Cell 4: 1041-1051
26. Goldman MH, Seurinck J, Marins M, Goldman GH, Mariani C (1998) A tobacco flower-specific gene encodes a polyphenol oxidase. Plant Mol Biol 36: 479-485
27. Gremski K, Ditta G, Yanofsky MF (2007) The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana. Development 134: 3593-3601
28. Gu Q, Kawata EE, MorseMJ,Wu HM, Cheung AY (1992) A flower-specific cDNA encoding a novel thionin in tobacco. Mol Gen Genet 234: 89-96
29. Heslop-Harrison Y, Shivanna KR (1977) The receptive surface of the angiosperm stigma. Ann Bot (Lond) 41: 1233-1258
30. Hiscock SJ, Allen AM (2008) Diverse cell signalling pathways regulate pollen-stigma interactions: the search for consensus. New Phytol 179: 286-317
31. Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9: 868-877
32. Hulskamp M, Kopczak SD, Horejsi TF, Kihl BK, Pruitt RE (1995) Identification of genes required for pollen-stigma recognition in Arabidopsis thaliana. Plant J 8: 703-714
33. Ishiguro S, Watanabe Y, Ito N, Nonaka H, Takeda N, Sakai T, Kanaya H, Okada K (2002) SHEPHERD is the Arabidopsis GRP94 responsible for the formation of functional CLAVATA proteins. EMBO J 21: 898-908
34. Kim S, Mollet JC, Dong J, Zhang K, Park SY, Lord EM (2003) Chemocyanin, a small basic protein from the lily stigma, induces pollen tube chemotropism. Proc Natl Acad Sci USA 100: 16125-16130
35. Koltunow AM, Truettner J, Cox KH, Wallroth M, Goldberg RB (1990) Different temporal and spatial gene expression patterns occur during anther development. Plant Cell 2: 1201-1224
36. Lee HY, Bahn SC, Shin JS, Hwang I, Back K, Doelling JH, Ryu SB (2005) Multiple forms of secretory phospholipase A2 in plants. Prog Lipid Res 44: 52-67
37. Leitch AR, Leitch IJ (2008) Genomic plasticity and the diversity of polyploidy plants. Science 320: 481-483
38. Li M, Xu W, Yang W, Kong Z, Xue Y (2007) Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice (Oryza sativa L.). Plant Physiol 144: 1797-1812
39. Luan S (2003) Protein phosphatases in plants. Annu Rev Plant Biol 54: 63-92
40. Lynn K, Fernandez A, Aida M, Sedbrook J, Tasaka M, Masson P, Barton MK (1999) The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene. Development 126: 469-481
41. Malavazi I, Savoldi M, Di Mauro SM, Menck CF, Harris SD, Goldman MH, Goldman GH (2006) Transcriptome analysis of Aspergillus nidulans exposed to camptothecin-induced DNA damage. Eukaryot Cell 5: 1688-1704
42. McClure B,Mou B, Canevascini S, Bernatzky R (1999) A small asparaginerich protein required for S-allele-specific pollen rejection in Nicotiana. Proc Natl Acad Sci USA 96: 13548-13553
43. Mollet JC, Park SY, Nothnagel EA, Lord EM (2000) A lily stylar pectin is necessary for pollen tube adhesion to an in vitro stylar matrix. Plant Cell 12: 1737-1750
44. Nemhauser JL, Feldman LJ, Zambryski PC (2000) Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development 127: 3877-3888
45. Nieuwland J, Feron R, Huisman BA, Fasolino A, Hilbers CW, Derksen J, Mariani C (2005) Lipid transfer proteins enhance cell wall extension in tobacco. Plant Cell 17: 2009-2019
46. O'Brien M, Bertrand C, Matton DP (2002) Characterization of a fertilization- induced and developmentally regulated plasma-membrane aquaporin expressed in reproductive tissues, in the wild potato Solanum chacoense Bitt. Planta 215: 485-493
47. O'Brien M, Chantha SC, Rahier A, Matton DP (2005) Lipid signaling in plants: cloning and expression analysis of the obtusifoliol-14a-demethylase, from Solanum chacoense Bitt., a pollination- and fertilizationinduced gene with both obtusifoliol and lanosterol demethylase activity. Plant Physiol 139: 734-749
48. Ori N, Sessa G, Lotan T, Himmelhoch S, Fluhr R (1990) A major stylar matrix polypeptide (sp41) is a member of the pathogenesis-related proteins superclass. EMBO J 9: 3429-3436
49. Otsu CT, daSilva I, Molfetta JB, Silva LR, de Almeida-Engler J, Engler G, Torraca PC, Goldman GH, Goldman MH (2004) NtWBC1, an ABC transporter gene specifically expressed in tobacco reproductive organs. J Exp Bot 55: 1643-1654
50. Park SY, Jauh GY, Mollet JC, Eckard KJ, Nothnagel EA, Walling LL, Lord EM (2000) A lipid transfer-like protein is necessary for lily pollen tube adhesion to an in vitro stylar matrix. Plant Cell 12: 151-164
51. Park SY, Lord EM (2003) Expression studies of SCA in lily and confirmation of its role in pollen tube adhesion. Plant Mol Biol 51: 183-189
52. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual, Ed 3. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
53. Semighini CP, Marins M, Goldman MH, Goldman GH (2002) Quantitative analysis of the relative transcript levels of ABC transporter Atr genes in Aspergillus nidulans by real-time reverse transcription-PCR assay. Appl Environ Microbiol 68: 1351-1357
54. Swanson R, Clark T, Preuss D (2005) Expression profiling of Arabidopsis stigma tissue identifies stigma-specific genes. Sex Plant Reprod 18: 163-171
55. Tang W, Ezcurra I, Muschietti J, McCormick S (2002) A cysteine-rich extracellular protein, LAT52, interacts with the extracellular domain of the pollen receptor kinase LePRK2. Plant Cell 14: 2277-2287
56. Tang W, Kelley D, Ezcurra I, Cotter R, McCormick S (2004) LeSTIG1, an extracellular binding partner for the pollen receptor kinases LePRK1 and LePRK2, promotes pollen tube growth in vitro. Plant J 39: 343-353
57. Tung CW, Dwyer KG, Nasrallah ME, Nasrallah JB (2005) Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth. Plant Physiol 138: 977-989
58. Twell D, Wing R, Yamaguchi J, McCormick S (1989) Isolation and expression of an anther-specific gene from tomato. Mol Gen Genet 217: 240-245
59. Van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14: 1441-1456
60. Vaucheret H, Vincentz M, Kronenberger J, Caboche M, Rouze' P (1989) Molecular cloning and characterisation of the two homologous genes coding for nitrate reductase in tobacco. Mol Gen Genet 216: 10-15
61. Verhoeven T, Feron R, Wolters-Arts M, Edqvist J, Gerats T, Derksen J, Mariani C (2005) STIG1 controls exudate secretion in the pistil of petunia and tobacco. Plant Physiol 138: 153-160
62. Wolf S, Grsic-Rausch S, Rausch T, Greiner S (2003) Identification of pollen-expressed pectin methylesterase inhibitors in Arabidopsis. FEBS Lett 555: 551-555
63. Wolters-Arts M, Lush WM, Mariani C (1998) Lipids are required for directional pollen-tube growth. Nature 392: 818-821
64. WuHM, Zou J,May B,GuQ, Cheung AY (1993) A tobacco gene family for flower cell wall proteins with a proline-rich domain and a cysteine-rich domain. Proc Natl Acad Sci USA 90: 6829-6833
65. Wu MF, Tian Q, Reed JW (2006) Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 133: 4211-4218
66. Yoshida KT, Endo M, Nakazono M, Fukuda H, Demura T, Tsuchiya T, Watanabe M (2005) cDNA microarray analysis of gene expression changes during pollination, pollen-tube elongation, fertilization, and early embryogenesis in rice pistils. Sex Plant Reprod 17: 269-275