Short monolithic columns for purification and fractionation of peptide samples for matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry analysis in proteomics

Journal of Chromatography A

Volumn 1216, Issue 17, 2009, Pages 3629-3636

  Moravcová, Dana ^a   Kahle, Vladislav ^a   Řehulková, Helena ^a,b   Chmelík, Jan ^a   Řehulka, Pavel ^a,b  

^a INSTITUTE OF ANALYTICAL CHEMISTRY   (Czech Republic)

^b UNIVERSITY OF DEFENCE   (Czech Republic)

Author keywords

MALDI TOF TOF MS; Monolithic capillary column; Proteomics; Sample pre treatment

Indexed keywords

1 PROPANOLS; BOVINE SERUM ALBUMINS; CYANO-4-HYDROXYCINNAMIC ACIDS; ETHYLENE GLYCOL DIMETHACRYLATE; FLIGHT MASS SPECTROMETRIES; FREE-RADICAL POLYMERIZATIONS; FUSED-SILICA CAPILLARIES; GEL ELECTROPHORESIS; IN-GEL DIGESTS; LAURYL METHACRYLATES; LINEAR GRADIENTS; MALDI TARGETS; MALDI-TOF/TOF MS; MATRIX-ASSISTED LASER DESORPTION/IONIZATION; MATRIXES; MICRO SYRINGE; MONOLITHIC CAPILLARY COLUMN; MONOLITHIC COLUMNS; NOVEL APPLICATIONS; POROGEN; PRE CONCENTRATIONS; PROTEIN DIGESTIONS; PROTEIN SEQUENCES; PROTEOMICS; REVERSED-PHASE; SAMPLE INFORMATIONS; SAMPLE PRE-TREATMENT; SHORT MONOLITHIC COLUMNS; SPECTROMETRY MEASUREMENTS; TRIFLUOROACETIC ACIDS; TRYPTIC PEPTIDES; WATER SOLUBLE PROTEINS;

ACETONITRILE; ACIDS; AMINES; BODY FLUIDS; DESORPTION; DIFFUSERS (OPTICAL); ELECTROPHORESIS; ETHYLENE; ETHYLENE GLYCOL; FUSED SILICA; GELATION; GELS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; MONOMERS; PEPTIDES; POLYMERS; SILICA; SOLVENT EXTRACTION; SPECTRUM ANALYSIS;

FREE RADICAL POLYMERIZATION;

ACETONITRILE; ALPHA CYANO 4 HYDROXYCINNAMIC ACID; BOVINE SERUM ALBUMIN; BUTANEDIOL; ETHYLENE GLYCOL DIMETHACRYLATE; LAURYL METHACRYLATE; METHACRYLIC ACID DERIVATIVE; PROPANOL; SILICON DIOXIDE; TRIFLUOROACETIC ACID; TRYPSIN; UNCLASSIFIED DRUG; WATER;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; CONCENTRATION PROCESS; ELUTION; INFUSION PUMP; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MONOLITHIC CAPILLARY COLUMN; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERIZATION; PRECONCENTRATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PURIFICATION; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; SEPARATION TECHNIQUE; SYRINGE;

ANIMALS; CATTLE; CEREALS; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HORDEUM; METHACRYLATES; PEPTIDES; PROTEOMICS; REPRODUCIBILITY OF RESULTS; SERUM ALBUMIN, BOVINE; SILICON DIOXIDE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

BOVINAE; HORDEUM;

EID: 63449093468     PISSN: 00219673     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chroma.2009.01.075     Document Type: Article

References (40)

1. Jensen O.N., Wilm M., Shevchenko A., and Mann M. Methods in Molecular Biology: 2-D Proteome Analysis Protocols (1999), Humana Press Inc., Totowa p. 513, (Chapter 52)
2. Steen H., and Mann M. Nat. Rev. Mol. Cell Biol. 5 (2004) 699
3. Nesvizhskii A.I., and Aebersold R. Mol. Cell. Proteomics 4 (2005) 1419
4. Kussmann M., Nordhoff E., Rahbek-Nielsen H., Haebel S., Rossel-Larsen M., Jakobsen L., Gobom J., Mirgorodskaya E., Kroll-Kristensen A., Palm L., and Roepstorff P. J. Mass Spectrom. 32 (1997) 593
5. van Hout M.W.J., de Zeeuw R.A., and de Jong G.J. J. Chromatogr. A 858 (1999) 117
6. van Hout M.W.J., van Egmond W.M.A., Franke J.P., de Zeeuw R.A., and de Jong G.J. J. Chromatogr. B 766 (2002) 37
7. Ishihama Y., Rappsilber J., and Mann M. J. Proteome Res. 5 (2006) 988
8. Jiang J., and Lucy Ch.A. Talanta 72 (2007) 113
9. Hsieh H.-Ch., Sheu C., Shi F.-K., and Li D.-T. J. Chromatogr. A 1165 (2007) 128
10. Miyazaki S., Morisato K., Ishizuka N., Minakuchi H., Shintani Y., Furuno M., and Nakanishi K. J. Chromatogr. A 1043 (2004) 19
11. Altun Z., Hjelmström A., Abdel-Rehim M., and Blomberg L.G. J. Sep. Sci. 30 (2007) 1964
12. Stachowiak T.B., Rohr T., Hilder E.F., Peterson D.S., Yi M., Svec F., and Fréchet J.M.J. Electrophoresis 24 (2003) 3689
13. Zou H., Huang X., Ye M., and Luo Q. J. Chromatogr. A 954 (2002) 5
14. Dulay M.T., Kulkarni R.P., and Zare R.N. Anal. Chem. 70 (1998) 5103
15. Chirica G.S., and Remcho V.T. Electrophoresis 21 (2000) 3093
16. Gusev I., Huang X., and Horváth C. J. Chromatogr. A 855 (1999) 273
17. Premstaller A., Oberacher H., Walcher W., Timperio A.M., Zolla L., Chervet J.P., Cavusoglu N., van Dorsselaer A., and Huber C.G. Anal. Chem. 73 (2001) 2390
18. Ivanov A.R., Zang L., and Karger B.L. Anal. Chem. 75 (2003) 5306
19. Walcher W., Oberacher H., Troiani S., Hölzl G., Oefner P., Zolla L., and Huber Ch.G. J. Chromatogr. B 782 (2002) 111
20. Peters E.C., Petro M., Svec F., and Fréchet J.M.J. Anal. Chem. 69 (1997) 3646
21. Lämmerhofer M., Svec F., Fréchet J.M.J., and Lindner W. J. Chromatogr. A 925 (2001) 265
22. Szucs V., and Freitag R. J. Chromatogr. A 1044 (2004) 201
23. Li Y., Chen Y., Xiang R., Ciuparu D., Pfefferle L.D., Horváth C., and Wilkins J.A. Anal. Chem. 77 (2005) 1398
24. Ueki Y., Umemura T., Iwashita Y., Odake T., Haraguchi H., and Tsunoda K. J. Chromatogr. A 1106 (2006) 106
25. Li Y.-M., Liao J.-L., Nakazato K., Mohammad J., Terenius L., and Hjertén S. Anal. Biochem. 223 (1994) 153
26. Hjertén S. Ind. Eng. Chem. Res. 38 (1999) 1205
27. Svec F., Peters E.C., Sýkora D., Yu C., and Fréchet J.M.J. J. High Resolut. Chromatogr. 23 (2000) 3
28. Legido-Quigley C., Marlin N.D., Melin V., Manz A., and Smith N.W. Electrophoresis 24 (2003) 917
29. Viklund C., Nordström A., Irgum K., Svec F., and Fréchet J.M.J. Macromolecules 34 (2001) 4361
30. Ueki Y., Umemura T., Li J., Odake T., and Tsunoda K.-i. Anal. Chem. 76 (2004) 7007
31. Josic D., and Strancar A. Ind. Eng. Chem. Res. 38 (1999) 333
32. Josic D., Buchacher A., and Jungbauer A. J. Chromatogr. B 752 (2001) 191
33. Josic D., and Buchacher A. J. Biochem. Biophys. Methods 49 (2001) 153
34. Jungbauer A., and Hahn R. J. Sep. Sci. 27 (2004) 767
35. Wu R., Zou H., Fu H., Jin W., and Ye M. Electrophoresis 23 (2002) 1239
36. Eeltink S., Geiser L., Svec F., and Fréchet J.M.J. J. Sep. Sci. 30 (2007) 2814
37. Foret F., Deml M., Kahle V., and Bocek P. Electrophoresis 7 (1986) 430
38. Kahle V., Vazlerova M., and Welsch T. J. Chromatogr. A 990 (2003) 3
39. Que A.H., Kahle V., and Novotny M.V. J. Microcolumn Sep. 12 (2000) 1
40. Řehulka P., Chmelík J., and Allmaier G. Rapid Commun. Mass Spectrom. 19 (2005) 79