Term based comparison metrics for controlled and uncontrolled indexing languages

Information Research

Volumn 14, Issue 1, 2009, Pages

  Good, B M ^a   Tennis, J T ^b  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 63349104905     PISSN: None     EISSN: 13681613     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Al-Khalifa, H. & Davis, H. (2007). Exploring the value of folksonomies for creating semantic metadata. International Journal on Semantic Web and Information Systems, 3(1), 13-39.
2. Ashburner, M., Ball, C. A., Blake, J.A., Botstein, D., Butler, H., Cherry, J. M., et al. (2000). Gene ontology: tool for the unification of biology. Nature Genetics, 25(1), 25-29.
3. Bard, J., Rhee, S. Y. & Ashburner, M. (2005). An ontology for cell types. Genome Biology, 6(2), R21.
4. Beghtol C. (1986). Semantic validity: concepts of warrant in bibliographic classification systems. Library Resources & Technical Services, 30(2), 109-125.
5. Default English stopwords. (2008). Amsterdam: 1ste Kreuze BV. Retrieved 26 February 2009 from http://www.ranks.nl/tools/stopwords.html
6. Degtyarenko, K., de Matos, P., Ennis, M., Hastings, J., Zbinden, M., McNaught, A., et al.. (2008). ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Research, 36(Database issue), D344-350.
7. Dellschaft, K. & Staab, S. (2006). On how to perform a gold standard based evaluation of ontology learning. In Isabel Cruz, Stefan Decker, Dean Allemang, Chris Preist, Daniel Schwabe, Peter Mika, et al. Proceedings of the 2006 International Semantic Web Conference, (pp. 228-241). Berlin, Heidelberg:
8. Feinberg, M. (2006). An examination of authority in social classification systems. In J. Furner & J.T. Tennis, (Eds.), Proceedings of the 17th Workshop of the American Society for Information Science and Technology Special Interest Group in Classification Research, Austin, Texas. Retrieved 26 February, 2009 from http://dlist.sir.arizona.edu/1783/01/feinberg.pdf (Archived by WebCite® at http://www.webcitation.org/5esiE7yRX)
9. Good, B., Kawas, E., Kuo, B. & Wilkinson, M. (2006). iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP Website. BMC Bioinformatics, 7(1), 534.
10. Good, B.M. & Tennis, J.T. (2008). Evidence of term-structure differences among folksonomies and controlled indexing languages. Poster presentation at the Annual Meeting of the American Society for Information Science and Technology, Columbus, OH, USA. Retrieved 19 January 2009 from http://www.asis.org/Conferences/AM08/posters/78.html (Archived by WebCite® at http://www.webcitation.org/5et58YQBG)
11. Haendel, M.A., Neuhaus, F., Osumi-Sutherland, D., Mabee, P.M., Mejino Jr., J.L.V., Mungall, C.J., et al. (2008). CARO: the Common Anatomy Reference Ontology. In A. Burger, D. Davidson and R. Baldock (Eds.), Anatomy ontologies for bioinformatics: principles and practice (pp. 327-349). London: Springer.
12. Hripcsak, G. & Rothschild, A.S. (2005). Agreement, the F-measure, and reliability in information retrieval. Journal of the American Medical Association, 12(3), 296-298.
13. Lund, B., Hammond, T., Flack, M. & Hannay, T. (2005). Social bookmarking tools (II): a case study - Connotea. D-Lib Magazine, 11(4). Retrieved 26 February, 2009 from http://www.dlib.org/dlib/april05/lund/04lund.html (Archived by WebCite® at http://www.webcitation.org/5et5FPQXR)
14. Morrison, P.J. (2008). Tagging and searching: search retrieval effectiveness of folksonomies on the World Wide Web. Information Processing and Management, 44(4), 1562-1579.
15. Ogren, P.V., Cohen, K.B., Acquaah-Mensah, G.K., Eberlein, J. & Hunter, L. (2004). The compositional structure of gene ontology terms. Proceedings of the Pacific Symposium on Biocomputing, 2004, 215-225.
16. Porter, M. F. (1980). An algorithm for suffix stripping. Program, 14(3), 130-137.
17. R Foundation for Statistical Computing. R Development Core Team (2008). R: a language and environment for statistical computing. Retrieved 26 February 2009 from http://cran.r-project.org/doc/manuals/refman.pdf
18. Rosse, C. & Mejino, J.J.L.V. (2003). A reference ontology for biomedical informatics: the foundational model of anatomy. Journal of Biomedical Informatics, 36(6), 478-500.
19. Sioutos, N., de Coronado, S., Haber, M.W., Hartel, F.W., Shaiu, W.L. & Wright, L.W. (2007). NCI thesaurus: a semantic model integrating cancer-related clinical and molecular information. Journal of Biomedical Informatics, 40(1), 30-43.
20. Soergel, D. (1974). Indexing languages and thesauri: construction and maintenance. Los Angeles, CA: Melville Publishing Company
21. Soergel, D. (1999). The rise of ontologies or the reinvention of classification. Journal of the American Society for Information Science, 50(12), 1119-1120.
22. Sprague, J., Bayraktaroglu, L., Bradford, Y., Conlin, T., Dunn, N., Fashena, D., et al. (2008). The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Research, 36(Database issue), D768-772.
23. Tennis, J. T. (2006). Social tagging and the next steps for indexing. In J. Furner & J.T. Tennis, (Eds.), Proceedings of the 17th Workshop of the American Society for Information Science and Technology Special Interest Group in Classification Research, Austin, Texas. Available at [http://dlist.sir.arizona.edu/2091/]
24. Tennis, J.T. & Jacob, E.K. (2008). Toward a theory of structure in information organization frameworks. In Clément. Arsenault & Joseph T. Tennis, (Eds.). Culture and identity in knowledge organization: proceedings of the Tenth International ISKO Conference, 5-8 August 2008, Montreal, Canada, (pp. 262-268) Würzburg, Germany: Ergon.
25. Tudhope, D. (2006). A tentative typology of KOS: towards a KOS of KOS? Paper presented at the 5th European NKOS Workshop, Alicante, Spain. [PowerPoint presentation retrieved 26 February, 2009 from http://bit.ly/12QbDC]
26. University of California Libraries. Bibliographic Services Task Force. (2005). Rethinking how we provide bibliographic services for the University of California. Retrieved 8 July, 2008 from http://libraries.universityofcalifornia.edu/sopag/BSTF/Final.pdf (Archived by WebCite® at http://www.webcitation.org/5eshFEjEt)
27. Van Slype, G. (1976). Definition of the essential characteristics of thesauri. Brussels: Bureau Marcel van Dijk.
28. Willighagen, E., O'Boyle, N., Gopalakrishnan, H., Jiao, D., Guha, R., Steinbeck, C., et al. (2007). Userscripts for the life sciences. BMC Bioinformatics, 8(1), 487.
29. Witten, I.H. & Frank, W. (2000). Data mining: practical machine learning tools with Java implementations, San Francisco, CA: Morgan Kaufmann.
30. Zhang, X. (2006). Concept integration of document databases using different indexing languages. Information Processing and Management, 42(1), 121-135.