메뉴 건너뛰기




Volumn 10, Issue 2, 2009, Pages 193-204

Life sciences on the Semantic Web: The Neurocommons and beyond

Author keywords

Data integration; Life science; Medicine; Neuroscience; Ontology; Semantic Web

Indexed keywords

ACCESS TO INFORMATION; CLASSIFICATION; COMPUTER LANGUAGE; COMPUTER NETWORK; DATA EXTRACTION; INFORMATION DISSEMINATION; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INFORMATION SERVICE; KNOWLEDGE BASE; KNOWLEDGE MANAGEMENT; NEUROSCIENCE; REVIEW; SEMANTICS; STANDARDIZATION; SYSTEMS BIOLOGY;

EID: 63349084462     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbp004     Document Type: Review
Times cited : (87)

References (42)
  • 1
    • 38549098540 scopus 로고    scopus 로고
    • The Molecular Biology Database Collection: 2008 update
    • Galperin MY. The Molecular Biology Database Collection: 2008 update. Nucleic Acids Res 2008;36:D2-4.
    • (2008) Nucleic Acids Res , vol.36
    • Galperin, M.Y.1
  • 2
    • 34249860439 scopus 로고    scopus 로고
    • Advancing translational research with the semantic web
    • Ruttenberg A, Clark T, Bug W, et al. Advancing translational research with the semantic web. BMC Bioinformatics 2007;8 (Suppl. 3):S2.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 3
    • Ruttenberg, A.1    Clark, T.2    Bug, W.3
  • 3
    • 0035953739 scopus 로고    scopus 로고
    • Publishing on the Semantic Web
    • Berners-Lee T, Hendler J. Publishing on the Semantic Web. Nature 2001;410:1023-4.
    • (2001) Nature , vol.410 , pp. 1023-1024
    • Berners-Lee, T.1    Hendler, J.2
  • 4
    • 0037462510 scopus 로고    scopus 로고
    • Communication. Science and the Semantic Web
    • Hendler J. Communication. Science and the Semantic Web. Science 2003;299:520-1.
    • (2003) Science , vol.299 , pp. 520-521
    • Hendler, J.1
  • 5
    • 3042627757 scopus 로고    scopus 로고
    • W3C Recommendation
    • 1 September, date last accessed
    • Beckett D, McBride B. 'RDF/XML Syntax Specification (Revised)'. W3C Recommendation, 2004. http://www.w3.org/TR/rdf-syntax-grammar/ (1 September 2008, date last accessed).
    • (2004)
    • Beckett, D.1    McBride, B.2
  • 6
    • 1842550305 scopus 로고    scopus 로고
    • W3C Recommendation
    • 1 September, date last accessed
    • McGuinness DL, van Harmelen F. 'OWL Web Ontology Language Overview'. W3C Recommendation, 2004. http://www.w3.org/TR/owl-features/ (1 September 2008, date last accessed).
    • (2004)
    • McGuinness, D.L.1    van Harmelen, F.2
  • 7
    • 15744362188 scopus 로고    scopus 로고
    • W3C Recommendation
    • 1 September, date last accessed
    • Prud'hommeaux E, Seaborne A. 'SPARQL Query Language for RDF'. W3C Recommendation, 2006. http://www.w3.org/TR/rdf-sparql-query/ (1 September 2008, date last accessed).
    • (2006)
    • Prud'hommeaux, E.1    Seaborne, A.2
  • 9
    • 84886754103 scopus 로고    scopus 로고
    • Acquisition, storing and retrieving diverse biomedical data using the World-Wide-Web: The Senselab Paradigm
    • Skoufos E, Mirsky JS, Healy MS, et al. Acquisition, storing and retrieving diverse biomedical data using the World-Wide-Web: The Senselab Paradigm. AMIA Annual Symposium Proceedings, 1998.
    • (1998) AMIA Annual Symposium Proceedings
    • Skoufos, E.1    Mirsky, J.S.2    Healy, M.S.3
  • 10
    • 34249860996 scopus 로고    scopus 로고
    • LinkHub: A Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
    • Smith AK, Cheung KH, Yip KY, et al. LinkHub: A Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinformatics 2007;8(Suppl. 3):S5.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 3
    • Smith, A.K.1    Cheung, K.H.2    Yip, K.Y.3
  • 11
    • 63349111928 scopus 로고    scopus 로고
    • W3C. Semantic Web Health Care and Life Sciences Interest Group. http://www.w3.org/2001/sw/hcls/ (1 September 2008, date last accessed).
    • W3C. Semantic Web Health Care and Life Sciences Interest Group. http://www.w3.org/2001/sw/hcls/ (1 September 2008, date last accessed).
  • 13
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Harris MA, Clark J, Ireland A, et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004;32 D258-61.
    • (2004) Nucleic Acids Res , vol.32
    • Harris, M.A.1    Clark, J.2    Ireland, A.3
  • 14
    • 0037396730 scopus 로고    scopus 로고
    • The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
    • Camon E, Magrane M, Barrell D, et al. The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 2003; 13:662-72.
    • (2003) Genome Res , vol.13 , pp. 662-672
    • Camon, E.1    Magrane, M.2    Barrell, D.3
  • 16
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • Lein ES, Hawrylycz MJ, Ao N, et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature 2007;445: 168-76.
    • (2007) Nature , vol.445 , pp. 168-176
    • Lein, E.S.1    Hawrylycz, M.J.2    Ao, N.3
  • 19
    • 6044224544 scopus 로고    scopus 로고
    • Globally distributed object identification for biological knowledgebases
    • Clark T, Martin S, Liefeld T. Globally distributed object identification for biological knowledgebases. Brief Bioinform 2004;5:59-70.
    • (2004) Brief Bioinform , vol.5 , pp. 59-70
    • Clark, T.1    Martin, S.2    Liefeld, T.3
  • 20
    • 36448963071 scopus 로고    scopus 로고
    • A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data
    • Post LJ, Roos M, Marshall MS, et al. A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data. Bioinformatics 2007;23:3080-7.
    • (2007) Bioinformatics , vol.23 , pp. 3080-3087
    • Post, L.J.1    Roos, M.2    Marshall, M.S.3
  • 21
    • 48449086427 scopus 로고    scopus 로고
    • The Ontology Lookup Service: More data and better tools for controlled vocabulary queries
    • Cote RG, Jones P, Martens L, et al. The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res 2008;36:W372-6.
    • (2008) Nucleic Acids Res , vol.36
    • Cote, R.G.1    Jones, P.2    Martens, L.3
  • 22
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith B, Ashburner M, Rosse C, et al. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 2007;25:1251-5.
    • (2007) Nat Biotechnol , vol.25 , pp. 1251-1255
    • Smith, B.1    Ashburner, M.2    Rosse, C.3
  • 23
    • 38449091076 scopus 로고    scopus 로고
    • Biomediator data integration and inference for functional annotation of anonymous sequences
    • Cadag E, Louie B, Myler PJ, et al. Biomediator data integration and inference for functional annotation of anonymous sequences. Pacific Symposium on Biocomputing 2007;343-54.
    • (2007) Pacific Symposium on Biocomputing , pp. 343-354
    • Cadag, E.1    Louie, B.2    Myler, P.J.3
  • 24
    • 63349097648 scopus 로고    scopus 로고
    • Bader G, Cary M. BioPAX - Biological Pathways Exchange Language, Level 2, 2005. http://www.biopax.org/release/biopax-level2-documentation.pdf (1 December 2008, date last accessed).
    • Bader G, Cary M. BioPAX - Biological Pathways Exchange Language, Level 2, 2005. http://www.biopax.org/release/biopax-level2-documentation.pdf (1 December 2008, date last accessed).
  • 25
    • 38549117301 scopus 로고    scopus 로고
    • The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/ Genome Databases
    • Caspi R, Foerster H, Fulcher CA, et al. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/ Genome Databases. Nucleic Acids Res 2008;36:D623-31.
    • (2008) Nucleic Acids Res , vol.36
    • Caspi, R.1    Foerster, H.2    Fulcher, C.A.3
  • 29
    • 33645129563 scopus 로고    scopus 로고
    • W3C Recommendation
    • 1 September, date last accessed
    • Clark KG, Feigenbaum L, Torres E. SPARQL Protocol for RDF. W3C Recommendation, 2008. http://www.w3.org/TR/rdf-sparql-protocol/ (1 September 2008, date last accessed).
    • (2008)
    • Clark, K.G.1    Feigenbaum, L.2    Torres, E.3
  • 30
    • 26244437738 scopus 로고    scopus 로고
    • Basal forebrain cholinergic dysfunction in Alzheimer's disease - interrelationship with beta-amyloid, inflammation and neurotrophin signaling
    • Schliebs R. Basal forebrain cholinergic dysfunction in Alzheimer's disease - interrelationship with beta-amyloid, inflammation and neurotrophin signaling. Neurochem Res 2005;30:895-908.
    • (2005) Neurochem Res , vol.30 , pp. 895-908
    • Schliebs, R.1
  • 31
    • 0031737627 scopus 로고    scopus 로고
    • Signal transduction as a drug-discovery platform
    • Persidis A. Signal transduction as a drug-discovery platform. Nat Biotechnol 1998;16:1082-3.
    • (1998) Nat Biotechnol , vol.16 , pp. 1082-1083
    • Persidis, A.1
  • 32
    • 63349110653 scopus 로고    scopus 로고
    • Samwald M, Cheung K. Experiences with the conversion of SenseLab databases to RDF/OWL (W3C Interest Group Note). http://www.w3.org/TR/ hcls-senselab/ (1 September 2008, date last accessed).
    • Samwald M, Cheung K. Experiences with the conversion of SenseLab databases to RDF/OWL (W3C Interest Group Note). http://www.w3.org/TR/ hcls-senselab/ (1 September 2008, date last accessed).
  • 33
    • 48249158190 scopus 로고    scopus 로고
    • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
    • Belleau F, Nolin MA, Tourigny N, et al. Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J Biomed Informatics 2008;41:706-16.
    • (2008) J Biomed Informatics , vol.41 , pp. 706-716
    • Belleau, F.1    Nolin, M.A.2    Tourigny, N.3
  • 34
    • 63349091216 scopus 로고    scopus 로고
    • Antezana E, Blondé W, Aranguren ME, et al. Semantic Systems Biology. http://www.semantic-systems-biology.org/ (1 September 2008, date last accessed).
    • Antezana E, Blondé W, Aranguren ME, et al. Semantic Systems Biology. http://www.semantic-systems-biology.org/ (1 September 2008, date last accessed).
  • 35
    • 47149113155 scopus 로고    scopus 로고
    • Ontology design patterns for bio-ontologies: A case study on the cell cycle ontology
    • Aranguren ME, Antezana E, Kuiper M, et al. Ontology design patterns for bio-ontologies: A case study on the cell cycle ontology. BMC Bioinformatics 2008;9:S1.
    • (2008) BMC Bioinformatics , vol.9
    • Aranguren, M.E.1    Antezana, E.2    Kuiper, M.3
  • 36
    • 36348964258 scopus 로고    scopus 로고
    • Scalable semantic retrieval through summarization and refinement
    • Dolby J, Fokoue A, Kalyanpur A, et al. Scalable semantic retrieval through summarization and refinement. Proc Natl Conf Artif Intell 2007;22:299.
    • (2007) Proc Natl Conf Artif Intell , vol.22 , pp. 299
    • Dolby, J.1    Fokoue, A.2    Kalyanpur, A.3
  • 37
    • 35148838596 scopus 로고    scopus 로고
    • Optimized reasoning in description logics using hypertableaux
    • Motik B, Shearer R, Horrocks I. Optimized reasoning in description logics using hypertableaux. Lecture Notes Comput Sci 2007;4603 67.
    • (2007) Lecture Notes Comput Sci , vol.4603 , pp. 67
    • Motik, B.1    Shearer, R.2    Horrocks, I.3
  • 39
    • 63349104703 scopus 로고    scopus 로고
    • OWL 2 Conformance and Test Cases, 2008
    • 1 December, date last accessed
    • Smith M, Horrocks I, Krötzsch M. OWL 2 Conformance and Test Cases, 2008. http://www.w3.org/TR/2008/WD-owl2-test-20081202/ (1 December 2008, date last accessed).
    • (2008)
    • Smith, M.1    Horrocks, I.2    Krötzsch, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.