-
1
-
-
38549098540
-
The Molecular Biology Database Collection: 2008 update
-
Galperin MY. The Molecular Biology Database Collection: 2008 update. Nucleic Acids Res 2008;36:D2-4.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Galperin, M.Y.1
-
2
-
-
34249860439
-
Advancing translational research with the semantic web
-
Ruttenberg A, Clark T, Bug W, et al. Advancing translational research with the semantic web. BMC Bioinformatics 2007;8 (Suppl. 3):S2.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 3
-
-
Ruttenberg, A.1
Clark, T.2
Bug, W.3
-
3
-
-
0035953739
-
Publishing on the Semantic Web
-
Berners-Lee T, Hendler J. Publishing on the Semantic Web. Nature 2001;410:1023-4.
-
(2001)
Nature
, vol.410
, pp. 1023-1024
-
-
Berners-Lee, T.1
Hendler, J.2
-
4
-
-
0037462510
-
Communication. Science and the Semantic Web
-
Hendler J. Communication. Science and the Semantic Web. Science 2003;299:520-1.
-
(2003)
Science
, vol.299
, pp. 520-521
-
-
Hendler, J.1
-
5
-
-
3042627757
-
W3C Recommendation
-
1 September, date last accessed
-
Beckett D, McBride B. 'RDF/XML Syntax Specification (Revised)'. W3C Recommendation, 2004. http://www.w3.org/TR/rdf-syntax-grammar/ (1 September 2008, date last accessed).
-
(2004)
-
-
Beckett, D.1
McBride, B.2
-
6
-
-
1842550305
-
W3C Recommendation
-
1 September, date last accessed
-
McGuinness DL, van Harmelen F. 'OWL Web Ontology Language Overview'. W3C Recommendation, 2004. http://www.w3.org/TR/owl-features/ (1 September 2008, date last accessed).
-
(2004)
-
-
McGuinness, D.L.1
van Harmelen, F.2
-
7
-
-
15744362188
-
W3C Recommendation
-
1 September, date last accessed
-
Prud'hommeaux E, Seaborne A. 'SPARQL Query Language for RDF'. W3C Recommendation, 2006. http://www.w3.org/TR/rdf-sparql-query/ (1 September 2008, date last accessed).
-
(2006)
-
-
Prud'hommeaux, E.1
Seaborne, A.2
-
8
-
-
63349087863
-
-
The Netherlands: Elsevier Science Publishers B.V
-
Evren S, Bijan P, Bernardo Cuenca G, et al. Pellet: A Practical OWL-DL Reasoner. The Netherlands: Elsevier Science Publishers B.V., 2007, 51-3.
-
Pellet: A Practical OWL-DL Reasoner
, vol.2007
, pp. 51-53
-
-
Evren, S.1
Bijan, P.2
Bernardo Cuenca, G.3
-
9
-
-
84886754103
-
Acquisition, storing and retrieving diverse biomedical data using the World-Wide-Web: The Senselab Paradigm
-
Skoufos E, Mirsky JS, Healy MS, et al. Acquisition, storing and retrieving diverse biomedical data using the World-Wide-Web: The Senselab Paradigm. AMIA Annual Symposium Proceedings, 1998.
-
(1998)
AMIA Annual Symposium Proceedings
-
-
Skoufos, E.1
Mirsky, J.S.2
Healy, M.S.3
-
10
-
-
34249860996
-
LinkHub: A Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
-
Smith AK, Cheung KH, Yip KY, et al. LinkHub: A Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinformatics 2007;8(Suppl. 3):S5.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 3
-
-
Smith, A.K.1
Cheung, K.H.2
Yip, K.Y.3
-
11
-
-
63349111928
-
-
W3C. Semantic Web Health Care and Life Sciences Interest Group. http://www.w3.org/2001/sw/hcls/ (1 September 2008, date last accessed).
-
W3C. Semantic Web Health Care and Life Sciences Interest Group. http://www.w3.org/2001/sw/hcls/ (1 September 2008, date last accessed).
-
-
-
-
13
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Harris MA, Clark J, Ireland A, et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004;32 D258-61.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
-
14
-
-
0037396730
-
The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
-
Camon E, Magrane M, Barrell D, et al. The Gene Ontology Annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 2003; 13:662-72.
-
(2003)
Genome Res
, vol.13
, pp. 662-672
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
-
16
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain
-
Lein ES, Hawrylycz MJ, Ao N, et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature 2007;445: 168-76.
-
(2007)
Nature
, vol.445
, pp. 168-176
-
-
Lein, E.S.1
Hawrylycz, M.J.2
Ao, N.3
-
19
-
-
6044224544
-
Globally distributed object identification for biological knowledgebases
-
Clark T, Martin S, Liefeld T. Globally distributed object identification for biological knowledgebases. Brief Bioinform 2004;5:59-70.
-
(2004)
Brief Bioinform
, vol.5
, pp. 59-70
-
-
Clark, T.1
Martin, S.2
Liefeld, T.3
-
20
-
-
36448963071
-
A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data
-
Post LJ, Roos M, Marshall MS, et al. A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data. Bioinformatics 2007;23:3080-7.
-
(2007)
Bioinformatics
, vol.23
, pp. 3080-3087
-
-
Post, L.J.1
Roos, M.2
Marshall, M.S.3
-
21
-
-
48449086427
-
The Ontology Lookup Service: More data and better tools for controlled vocabulary queries
-
Cote RG, Jones P, Martens L, et al. The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res 2008;36:W372-6.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Cote, R.G.1
Jones, P.2
Martens, L.3
-
22
-
-
35948989284
-
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith B, Ashburner M, Rosse C, et al. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 2007;25:1251-5.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
-
23
-
-
38449091076
-
Biomediator data integration and inference for functional annotation of anonymous sequences
-
Cadag E, Louie B, Myler PJ, et al. Biomediator data integration and inference for functional annotation of anonymous sequences. Pacific Symposium on Biocomputing 2007;343-54.
-
(2007)
Pacific Symposium on Biocomputing
, pp. 343-354
-
-
Cadag, E.1
Louie, B.2
Myler, P.J.3
-
24
-
-
63349097648
-
-
Bader G, Cary M. BioPAX - Biological Pathways Exchange Language, Level 2, 2005. http://www.biopax.org/release/biopax-level2-documentation.pdf (1 December 2008, date last accessed).
-
Bader G, Cary M. BioPAX - Biological Pathways Exchange Language, Level 2, 2005. http://www.biopax.org/release/biopax-level2-documentation.pdf (1 December 2008, date last accessed).
-
-
-
-
25
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/ Genome Databases
-
Caspi R, Foerster H, Fulcher CA, et al. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/ Genome Databases. Nucleic Acids Res 2008;36:D623-31.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
-
29
-
-
33645129563
-
W3C Recommendation
-
1 September, date last accessed
-
Clark KG, Feigenbaum L, Torres E. SPARQL Protocol for RDF. W3C Recommendation, 2008. http://www.w3.org/TR/rdf-sparql-protocol/ (1 September 2008, date last accessed).
-
(2008)
-
-
Clark, K.G.1
Feigenbaum, L.2
Torres, E.3
-
30
-
-
26244437738
-
Basal forebrain cholinergic dysfunction in Alzheimer's disease - interrelationship with beta-amyloid, inflammation and neurotrophin signaling
-
Schliebs R. Basal forebrain cholinergic dysfunction in Alzheimer's disease - interrelationship with beta-amyloid, inflammation and neurotrophin signaling. Neurochem Res 2005;30:895-908.
-
(2005)
Neurochem Res
, vol.30
, pp. 895-908
-
-
Schliebs, R.1
-
31
-
-
0031737627
-
Signal transduction as a drug-discovery platform
-
Persidis A. Signal transduction as a drug-discovery platform. Nat Biotechnol 1998;16:1082-3.
-
(1998)
Nat Biotechnol
, vol.16
, pp. 1082-1083
-
-
Persidis, A.1
-
32
-
-
63349110653
-
-
Samwald M, Cheung K. Experiences with the conversion of SenseLab databases to RDF/OWL (W3C Interest Group Note). http://www.w3.org/TR/ hcls-senselab/ (1 September 2008, date last accessed).
-
Samwald M, Cheung K. Experiences with the conversion of SenseLab databases to RDF/OWL (W3C Interest Group Note). http://www.w3.org/TR/ hcls-senselab/ (1 September 2008, date last accessed).
-
-
-
-
33
-
-
48249158190
-
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
-
Belleau F, Nolin MA, Tourigny N, et al. Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J Biomed Informatics 2008;41:706-16.
-
(2008)
J Biomed Informatics
, vol.41
, pp. 706-716
-
-
Belleau, F.1
Nolin, M.A.2
Tourigny, N.3
-
34
-
-
63349091216
-
-
Antezana E, Blondé W, Aranguren ME, et al. Semantic Systems Biology. http://www.semantic-systems-biology.org/ (1 September 2008, date last accessed).
-
Antezana E, Blondé W, Aranguren ME, et al. Semantic Systems Biology. http://www.semantic-systems-biology.org/ (1 September 2008, date last accessed).
-
-
-
-
35
-
-
47149113155
-
Ontology design patterns for bio-ontologies: A case study on the cell cycle ontology
-
Aranguren ME, Antezana E, Kuiper M, et al. Ontology design patterns for bio-ontologies: A case study on the cell cycle ontology. BMC Bioinformatics 2008;9:S1.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Aranguren, M.E.1
Antezana, E.2
Kuiper, M.3
-
36
-
-
36348964258
-
Scalable semantic retrieval through summarization and refinement
-
Dolby J, Fokoue A, Kalyanpur A, et al. Scalable semantic retrieval through summarization and refinement. Proc Natl Conf Artif Intell 2007;22:299.
-
(2007)
Proc Natl Conf Artif Intell
, vol.22
, pp. 299
-
-
Dolby, J.1
Fokoue, A.2
Kalyanpur, A.3
-
37
-
-
35148838596
-
Optimized reasoning in description logics using hypertableaux
-
Motik B, Shearer R, Horrocks I. Optimized reasoning in description logics using hypertableaux. Lecture Notes Comput Sci 2007;4603 67.
-
(2007)
Lecture Notes Comput Sci
, vol.4603
, pp. 67
-
-
Motik, B.1
Shearer, R.2
Horrocks, I.3
-
39
-
-
63349104703
-
OWL 2 Conformance and Test Cases, 2008
-
1 December, date last accessed
-
Smith M, Horrocks I, Krötzsch M. OWL 2 Conformance and Test Cases, 2008. http://www.w3.org/TR/2008/WD-owl2-test-20081202/ (1 December 2008, date last accessed).
-
(2008)
-
-
Smith, M.1
Horrocks, I.2
Krötzsch, M.3
-
40
-
-
63349101439
-
-
Golbreich C, Kalyanpur A, Parsia B Eds
-
Golbreich C, Kalyanpur A, Parsia B (Eds.). Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, Innsbruck, Austria, June 6-7, 2007. CEUR Workshop Proceedings 258 CEUR-WS.org 2007.
-
(2007)
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, Innsbruck, Austria, June 6-7, 2007. CEUR Workshop Proceedings 258 CEUR-WS.org
-
-
|