메뉴 건너뛰기




Volumn 234, Issue 1, 2009, Pages 47-61

Application of the split-gradient method to 3D image deconvolution in fluorescence microscopy

Author keywords

Deconvolution; Edge preserving; Fluorescence microscopy; Markov random field; Split gradient method

Indexed keywords

BAYESIAN NETWORKS; FLUORESCENCE; GRADIENT METHODS; IMAGE ENHANCEMENT; IMAGE RECONSTRUCTION; IMAGE SEGMENTATION; MARKOV PROCESSES; MAXIMUM LIKELIHOOD; PHOTONS; RESTORATION;

EID: 63049089512     PISSN: 00222720     EISSN: 13652818     Source Type: Journal    
DOI: 10.1111/j.1365-2818.2009.03150.x     Document Type: Article
Times cited : (30)

References (45)
  • 1
    • 44449121247 scopus 로고    scopus 로고
    • The study of an iterative method for the reconstruction of images corrupted by Poisson and Gaussian noise
    • Benvenuto, F., Camera, A.L., Theys, C., Ferrari, A., Lanteri, H. Bertero, M. (2008) The study of an iterative method for the reconstruction of images corrupted by Poisson and Gaussian noise. Inverse Probl. 24, 035016.
    • (2008) Inverse Probl. , vol.24 , pp. 035016
    • Benvenuto, F.1    Camera, A.L.2    Theys, C.3    Ferrari, A.4    Lanteri, H.5    Bertero, M.6
  • 4
    • 0000913755 scopus 로고
    • Spatial interaction and the statistical analysis of lattice systems
    • Besag, J. (1974) Spatial interaction and the statistical analysis of lattice systems. J. Roy. Stat. Soc. B 36, 192 236.
    • (1974) J. Roy. Stat. Soc. B , vol.36 , pp. 192-236
    • Besag, J.1
  • 5
    • 62649113355 scopus 로고    scopus 로고
    • A scaled gradient projection for constrained image deblurring
    • Department of Mathematics, University of Modena and Reggio Emilia.
    • Bonettini, S., Zanella, R. Zanni, L. (2009) A scaled gradient projection for constrained image deblurring. Inverse Problems, 25, 015002, Department of Mathematics, University of Modena and Reggio Emilia.
    • (2009) Inverse Problems , vol.25 , pp. 015002
    • Bonettini, S.1    Zanella, R.2    Zanni, L.3
  • 6
    • 0025693865 scopus 로고
    • Image restoration in 3D microscopy with limited data
    • ed. by. L. C. Smith. pp. Society of Photo-Optical Instrumentation Engineers.
    • Carrington, W.A. (1990) Image restoration in 3D microscopy with limited data. Bioimaging and Two-Dimensional Spectroscopy, Vol. 1205 (ed. by L. C. Smith pp. 72 83. Society of Photo-Optical Instrumentation Engineers.
    • (1990) Bioimaging and Two-Dimensional Spectroscopy , vol.1205 , pp. 72-83
    • Carrington, W.A.1
  • 9
    • 0029721393 scopus 로고    scopus 로고
    • Fast regularization technique for expectation maximization algorithm for optical sectioning microscopy
    • ed. C.J. Cogswell, G.S. Kino, G.S. & T. Wilson. pp. Society of Photo-Optical Instrumentation Engineers, Bellingham, WA, USA.
    • Conchello, J.A. McNally, J.G. (1996) Fast regularization technique for expectation maximization algorithm for optical sectioning microscopy. Three-Dimensional Microscopy: Image Acquisition and Processing III, Vol. 2655 (ed. C.J. Cogswell, G.S. Kino, G.S. & T. Wilson pp. 199 208. Society of Photo-Optical Instrumentation Engineers, Bellingham, WA, USA.
    • (1996) Three-Dimensional Microscopy: Image Acquisition and Processing III , vol.2655 , pp. 199-208
    • Conchello, J.A.1    McNally, J.G.2
  • 10
    • 0025595687 scopus 로고
    • Why least squares and maximum entropy? An axiomatic approach to inference for linear inverse problems
    • Csiszár, I. (1991) Why least squares and maximum entropy? An axiomatic approach to inference for linear inverse problems. Ann. Stat. 19, 2032 2066.
    • (1991) Ann. Stat. , vol.19 , pp. 2032-2066
    • Csiszár, I.1
  • 11
    • 33645901226 scopus 로고    scopus 로고
    • Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution
    • Dey, N., Blanc-Feraud, L., Zimmer, C., Roux, P., Kam, Z., Olivo-Marin, J.C. Zerubia, J. (2006) Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution. Microsc. Res. Tech. 69, 260 266.
    • (2006) Microsc. Res. Tech. , vol.69 , pp. 260-266
    • Dey, N.1    Blanc-Feraud, L.2    Zimmer, C.3    Roux, P.4    Kam, Z.5    Olivo-Marin, J.C.6    Zerubia, J.7
  • 13
    • 0026835074 scopus 로고
    • Constraint restoration and the recovery of discontinuities
    • Geman, D. Reynolds, C. (1992) Constraint restoration and the recovery of discontinuities. IEEE Trans. Pattern Anal. 14, 367 383.
    • (1992) IEEE Trans. Pattern Anal. , vol.14 , pp. 367-383
    • Geman, D.1    Reynolds, C.2
  • 14
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distribution and the Bayesian restoration of images
    • Geman, S. Geman, D. (1984) Stochastic relaxation, Gibbs distribution and the Bayesian restoration of images. IEEE Trans. Pattern Anal. 6, 721 741.
    • (1984) IEEE Trans. Pattern Anal. , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 16
    • 17644401707 scopus 로고    scopus 로고
    • Motion-compensated reconstruction of tomographic image sequences
    • Gravier, E. Yang, Y. (2005) Motion-compensated reconstruction of tomographic image sequences. IEEE Trans. Nucl. Sci. 52, 51 56.
    • (2005) IEEE Trans. Nucl. Sci. , vol.52 , pp. 51-56
    • Gravier, E.1    Yang, Y.2
  • 17
    • 0025404969 scopus 로고
    • Bayesian reconstructions from emission tomography data using a modified em algorithm
    • Green, P.J. (1990) Bayesian reconstructions from emission tomography data using a modified EM algorithm. IEEE Trans. Med. Imag. 9, 84 93.
    • (1990) IEEE Trans. Med. Imag. , vol.9 , pp. 84-93
    • Green, P.J.1
  • 18
    • 0024681039 scopus 로고
    • A generalized em algorithm for 3D Bayesian reconstruction from Poisson data using Gibbs priors
    • Hebert, T. Leahy, R. (1989) A generalized EM algorithm for 3D Bayesian reconstruction from Poisson data using Gibbs priors. IEEE Trans. Med. Imag. 8, 194 202.
    • (1989) IEEE Trans. Med. Imag. , vol.8 , pp. 194-202
    • Hebert, T.1    Leahy, R.2
  • 19
    • 0000781777 scopus 로고
    • Maximum-likelihood image restoration adapted for noncoherent optical imaging
    • Holmes, T.J. (1988) Maximum-likelihood image restoration adapted for noncoherent optical imaging. J. Opt. Soc. Am. A 5, 666 673.
    • (1988) J. Opt. Soc. Am. A , vol.5 , pp. 666-673
    • Holmes, T.J.1
  • 20
    • 0013506310 scopus 로고
    • Richardson-Lucy/maximum likelihood image restoration algorithm for fluorescence microscopy: Further testing
    • Holmes, T.J. Liu, Y.-H. (1989) Richardson-Lucy/maximum likelihood image restoration algorithm for fluorescence microscopy: further testing. Appl. Optics 28, 4930 4938.
    • (1989) Appl. Optics , vol.28 , pp. 4930-4938
    • Holmes, T.J.1    Liu, Y.-H.2
  • 22
    • 0034146647 scopus 로고    scopus 로고
    • Background estimation in nonlinear image restoration
    • van Kempen, G.M.P. van Vliet, L.J. (2000a) Background estimation in nonlinear image restoration. J. Opt. Soc. Am. A 17, 425 433.
    • (2000) J. Opt. Soc. Am. A , vol.17 , pp. 425-433
    • Van Kempen, G.M.P.1    Van Vliet, L.J.2
  • 23
    • 0034003452 scopus 로고    scopus 로고
    • The influence of the regularization parameter and the first estimate on the performance of Tikhonov regularized non-linear image restoration algorithm
    • van Kempen, G.M.P. van Vliet, L.J. (2000b). The influence of the regularization parameter and the first estimate on the performance of Tikhonov regularized non-linear image restoration algorithm. J. Microsc. 198, 63 75.
    • (2000) J. Microsc. , vol.198 , pp. 63-75
    • Van Kempen, G.M.P.1    Van Vliet, L.J.2
  • 25
  • 26
    • 0025587714 scopus 로고
    • Convergence of em image reconstruction algorithms with Gibbs smoothing
    • Lange, K. (1990) Convergence of EM image reconstruction algorithms with Gibbs smoothing. IEEE Trans. Med. Imag. 9, 439 446.
    • (1990) IEEE Trans. Med. Imag. , vol.9 , pp. 439-446
    • Lange, K.1
  • 27
    • 31444436844 scopus 로고    scopus 로고
    • Restoration of astrophysical images - The case of Poisson data with additive Gaussian noise
    • Lantéri, H. Theys, C. (2005) Restoration of astrophysical images - the case of Poisson data with additive Gaussian noise. EURASIP J. Appl. Signal Proc. 15, 2500 2513.
    • (2005) EURASIP J. Appl. Signal Proc. , vol.15 , pp. 2500-2513
    • Lantéri, H.1    Theys, C.2
  • 28
    • 0035336716 scopus 로고    scopus 로고
    • A general method to devise maximum-likelihood signal restoration multiplicative algorithms with non-negativity constraints
    • Lantéri, H., Roche, M., Cuevas, O. Aime, C. (2001) A general method to devise maximum-likelihood signal restoration multiplicative algorithms with non-negativity constraints. Signal Process. 81, 945 974.
    • (2001) Signal Process. , vol.81 , pp. 945-974
    • Lantéri, H.1    Roche, M.2    Cuevas, O.3    Aime, C.4
  • 29
    • 0036796491 scopus 로고    scopus 로고
    • Penalized maximum likelihood image restoration with positivity constraints: Multiplicative algorithms
    • Lantéri, H., Roche, M. Aime, C. (2002) Penalized maximum likelihood image restoration with positivity constraints: multiplicative algorithms. Inverse Probl. 18, 1397 1419.
    • (2002) Inverse Probl. , vol.18 , pp. 1397-1419
    • Lantéri, H.1    Roche, M.2    Aime, C.3
  • 30
    • 0001050714 scopus 로고
    • An iterative technique for the rectification of observed distributions
    • Lucy, L.B. (1974) An iterative technique for the rectification of observed distributions. Astron. J. 79, 745 754.
    • (1974) Astron. J. , vol.79 , pp. 745-754
    • Lucy, L.B.1
  • 32
    • 34548388033 scopus 로고    scopus 로고
    • Markov random field aided Bayesian approach for image reconstruction in confocal microscopy
    • Mondal, P.P., Vicidomini, G. Diaspro, A. (2007) Markov random field aided Bayesian approach for image reconstruction in confocal microscopy. J. Appl. Phys. 102, 044701.
    • (2007) J. Appl. Phys. , vol.102 , pp. 044701
    • Mondal, P.P.1    Vicidomini, G.2    Diaspro, A.3
  • 33
    • 40849150701 scopus 로고    scopus 로고
    • Image reconstruction for multiphoton fluorescence microscopy
    • Mondal, P.P., Vicidomini, G. Diaspro, A. (2008) Image reconstruction for multiphoton fluorescence microscopy. Appl. Phys. Lett. 92, 103902.
    • (2008) Appl. Phys. Lett. , vol.92 , pp. 103902
    • Mondal, P.P.1    Vicidomini, G.2    Diaspro, A.3
  • 34
    • 0035297601 scopus 로고    scopus 로고
    • Fast EM-like methods for maximum a posteriori estimates in emission tomography
    • Pierro, A.R.D. Yamagishi, M.E.B. (2001) Fast EM-like methods for maximum a posteriori estimates in emission tomography. IEEE Trans. Med. Imag. 20, 280 288.
    • (2001) IEEE Trans. Med. Imag. , vol.20 , pp. 280-288
    • Pierro, A.R.D.1    Yamagishi, M.E.B.2
  • 35
    • 0001106323 scopus 로고
    • Electromagnetic diffraction in optical systems II. Structure of the image field in an aplanatic system
    • Richards, B. Wolf, E. (1959) Electromagnetic diffraction in optical systems II. Structure of the image field in an aplanatic system. Proc. Roy. Soc. Lond. A 253, 358 379.
    • (1959) Proc. Roy. Soc. Lond. A , vol.253 , pp. 358-379
    • Richards, B.1    Wolf, E.2
  • 36
    • 0002594849 scopus 로고
    • Bayesian-based iterative method of image restoration
    • Richardson, W.H. (1972) Bayesian-based iterative method of image restoration. J. Opt. Soc. Am. 62, 55 59.
    • (1972) J. Opt. Soc. Am. , vol.62 , pp. 55-59
    • Richardson, W.H.1
  • 37
    • 44049111982 scopus 로고
    • Nonlinear total variation based noise removal algorithms
    • Rudin, L.I., Osher, S. Fatemi, E. (1992) Nonlinear total variation based noise removal algorithms. Physica D 60, 259 268.
    • (1992) Physica D , vol.60 , pp. 259-268
    • Rudin, L.I.1    Osher, S.2    Fatemi, E.3
  • 38
    • 0013537731 scopus 로고    scopus 로고
    • Three-dimensional super-resolution with a 4Pi-confocal microscope using image restoration
    • Schrader, M., Hell, S.W. van der Voort., H.T.M. (1998) Three-dimensional super-resolution with a 4Pi-confocal microscope using image restoration. J. Appl. Phys. 84, 4033 4042.
    • (1998) J. Appl. Phys. , vol.84 , pp. 4033-4042
    • Schrader, M.1    Hell, S.W.2    Van Der Voort., H.T.M.3
  • 39
    • 0029359557 scopus 로고
    • Stochastic modeling and estimation of multispectral image data
    • Schultz, R.R. Stevenson, R.L. (1995) Stochastic modeling and estimation of multispectral image data. IEEE Trans. Image Process. 4, 1109 1119.
    • (1995) IEEE Trans. Image Process. , vol.4 , pp. 1109-1119
    • Schultz, R.R.1    Stevenson, R.L.2
  • 40
    • 0020194763 scopus 로고
    • Maximum likelihood reconstruction in positron emission tomography
    • Shepp, L.A. Vardi, Y. (1982) Maximum likelihood reconstruction in positron emission tomography. IEEE Trans. Med. Imag. 1, 113 122.
    • (1982) IEEE Trans. Med. Imag. , vol.1 , pp. 113-122
    • Shepp, L.A.1    Vardi, Y.2
  • 41
    • 0027597289 scopus 로고
    • Image recovery from data acquired with a charge-coupled-device camera
    • Snyder, D.L., Hammoud, A.M. White., R.L. (1993) Image recovery from data acquired with a charge-coupled-device camera. J. Opt. Soc. Am. A 10, 1014 1023.
    • (1993) J. Opt. Soc. Am. A , vol.10 , pp. 1014-1023
    • Snyder, D.L.1    Hammoud, A.M.2    White, R.L.3
  • 43
    • 0028463874 scopus 로고
    • On the location error of curved edges in low-pass filtered 2D and 3D images
    • Verbeek, P.W. van Vliet, L.J. (1994) On the location error of curved edges in low-pass filtered 2D and 3D images. IEEE Trans. Pattern Anal. 16, 726 733.
    • (1994) IEEE Trans. Pattern Anal. , vol.16 , pp. 726-733
    • Verbeek, P.W.1    Van Vliet, L.J.2
  • 44
    • 33846164758 scopus 로고    scopus 로고
    • Fuzzy logic and maximum a posteriori-based image restoration for confocal microscopy
    • Vicidomini, G., Mondal, P.P. Diaspro, A. (2006) Fuzzy logic and maximum a posteriori-based image restoration for confocal microscopy. Opt. Lett. 31, 3582 3584.
    • (2006) Opt. Lett. , vol.31 , pp. 3582-3584
    • Vicidomini, G.1    Mondal, P.P.2    Diaspro, A.3
  • 45
    • 0028997057 scopus 로고
    • Restoration of confocal images for quantitative image analysis
    • van der Voort, H.T.M. Strasters, K.C. (1995) Restoration of confocal images for quantitative image analysis. J. Microsc. 178, 165 181.
    • (1995) J. Microsc. , vol.178 , pp. 165-181
    • Van Der Voort, H.T.M.1    Strasters, K.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.