-
1
-
-
0037197936
-
Reverse engineering gene networks using singular value decomposition and robust regression
-
M. K. Stephen Yeung, J. Tegnéi, and J. J. Collins. Reverse engineering gene networks using singular value decomposition and robust regression. PNAS, 99(9):6163-6168, 2002.
-
(2002)
PNAS
, vol.99
, Issue.9
, pp. 6163-6168
-
-
Stephen Yeung, M.K.1
Tegnéi, J.2
Collins, J.J.3
-
2
-
-
0037687416
-
Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling
-
J. Tegnér, M. K. Stephen Yeung, J. Hasty, and J. J. Collins. Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling. PNAS, 100(10):5944-5949, 2003.
-
(2003)
PNAS
, vol.100
, Issue.10
, pp. 5944-5949
-
-
Tegnér, J.1
Stephen Yeung, M.K.2
Hasty, J.3
Collins, J.J.4
-
3
-
-
62949084459
-
Genetic network identification using convex programming
-
Technical Report MS-CIS-07-20
-
A. A. Julius, M. Zavlanos, S. Boyd, and G. J. Pappas. Genetic network identification using convex programming. Technical Report MS-CIS-07-20, 2007.
-
(2007)
-
-
Julius, A.A.1
Zavlanos, M.2
Boyd, S.3
Pappas, G.J.4
-
5
-
-
33747841797
-
-
Oxford University Press, Oxford, UK
-
J. Ross, I. Schreiber, and M. O. Vlad. Determination of Complex Reaction Mechanisms: Analysis of Chemical, Biological and Genetic Networks. Oxford University Press, Oxford, UK, 2006.
-
(2006)
Determination of Complex Reaction Mechanisms: Analysis of Chemical, Biological and Genetic Networks
-
-
Ross, J.1
Schreiber, I.2
Vlad, M.O.3
-
6
-
-
0001622226
-
Toward a systematic determination of complex reaction mechanisms
-
T. Chevalier, I. Schreiber, and J. Ross. Toward a systematic determination of complex reaction mechanisms. J. Phys. Chem., 97(26):6776-6787, 1993.
-
(1993)
J. Phys. Chem
, vol.97
, Issue.26
, pp. 6776-6787
-
-
Chevalier, T.1
Schreiber, I.2
Ross, J.3
-
7
-
-
62749178015
-
Dynamical Structure Functions for the Reverse Engineering of LTI Networks
-
New Orleans, LA, USA
-
J. Gonçalves, R. Howes, and S. Warnick. Dynamical Structure Functions for the Reverse Engineering of LTI Networks. In Proceedings of the 46th IEEE Conference on Decision and Control, pages 1516-1522, New Orleans, LA, USA, 2007.
-
(2007)
Proceedings of the 46th IEEE Conference on Decision and Control
, pp. 1516-1522
-
-
Gonçalves, J.1
Howes, R.2
Warnick, S.3
-
8
-
-
0036789922
-
Untangling the wires: A strategy to trace functional interactions in signalling and gene networks
-
B. N. Kholodenko, A. Kiyatkin, F. J. Bruggeman, E. D. Sontag, H. V. Westerhoff, and J. B. Hoek. Untangling the wires: A strategy to trace functional interactions in signalling and gene networks. PNAS, 99(20):12841-12846, 2002.
-
(2002)
PNAS
, vol.99
, Issue.20
, pp. 12841-12846
-
-
Kholodenko, B.N.1
Kiyatkin, A.2
Bruggeman, F.J.3
Sontag, E.D.4
Westerhoff, H.V.5
Hoek, J.B.6
-
9
-
-
3242704801
-
oai:arXiv.org:physics/ 0205003
-
B. N. Kholodenko and E. D. Sontag. Determination of functional network structure from local parameter dependence data. oai:arXiv.org:physics/ 0205003, 2002.
-
(2002)
-
-
Kholodenko, B.N.1
Sontag, E.D.2
-
10
-
-
0037197832
-
Determination of causal connectivities of species in random networks
-
W. Vance, A. Arkin, and J. Ross. Determination of causal connectivities of species in random networks. PNAS, 99(9):5816-5821, 2002.
-
(2002)
PNAS
, vol.99
, Issue.9
, pp. 5816-5821
-
-
Vance, W.1
Arkin, A.2
Ross, J.3
-
12
-
-
0030848624
-
Determination of causal connectivities of species in random networks
-
A. Arkin, P. D. Shen, and J. Ross. Determination of causal connectivities of species in random networks. Science, 277:1275-1279, 1997.
-
(1997)
Science
, vol.277
, pp. 1275-1279
-
-
Arkin, A.1
Shen, P.D.2
Ross, J.3
-
13
-
-
0036469175
-
Predictive non-linear modeling of complex data by artificial neural networks
-
J. S. Almeida. Predictive non-linear modeling of complex data by artificial neural networks. Current Option in Biotechnology, 13:72-76, 2002.
-
(2002)
Current Option in Biotechnology
, vol.13
, pp. 72-76
-
-
Almeida, J.S.1
-
14
-
-
0034104824
-
Coarse-grained reverse engineering of genetic regulatory networks
-
M. Wahde and J. Hertz. Coarse-grained reverse engineering of genetic regulatory networks. Biosystems, 55:129-136, 2000.
-
(2000)
Biosystems
, vol.55
, pp. 129-136
-
-
Wahde, M.1
Hertz, J.2
-
15
-
-
35748964479
-
Modeling gene expression regulatory networks with the sparse vector autoregressive model
-
A. Fujita, J. R. Sato, H. M. Garay-Malpartida, R. Yamaguchi, S. Miyano, M. C. Sogayar, and C. E. Ferreira. Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Systems Biology, 1:39, 2007.
-
(2007)
BMC Systems Biology
, vol.1
, pp. 39
-
-
Fujita, A.1
Sato, J.R.2
Garay-Malpartida, H.M.3
Yamaguchi, R.4
Miyano, S.5
Sogayar, M.C.6
Ferreira, C.E.7
-
17
-
-
0023531427
-
Chemical reaction network structure and the stability of complex isothermal reactors-I. The deficiency zero and deficiency one theorems
-
M. Feinberg. Chemical reaction network structure and the stability of complex isothermal reactors-I. The deficiency zero and deficiency one theorems. Chem. Eng. Sci., 42(10):2229-2268, 1987.
-
(1987)
Chem. Eng. Sci
, vol.42
, Issue.10
, pp. 2229-2268
-
-
Feinberg, M.1
-
18
-
-
0036100833
-
Analysis Techniques for Microarray Time-Series Data
-
V. Filkov, S. Skiena, and J. Zhi. Analysis Techniques for Microarray Time-Series Data. Journal of Computational Biology, 9(2):317-330, 2002.
-
(2002)
Journal of Computational Biology
, vol.9
, Issue.2
, pp. 317-330
-
-
Filkov, V.1
Skiena, S.2
Zhi, J.3
-
19
-
-
34948829632
-
Inferring biomolecular interaction networks based on convex optimization
-
S. Hana, Y Yoon, and K.-H. Choc. Inferring biomolecular interaction networks based on convex optimization. Computational Biology and Chemistry, 31:347-354, 2007.
-
(2007)
Computational Biology and Chemistry
, vol.31
, pp. 347-354
-
-
Hana, S.1
Yoon, Y.2
Choc, K.-H.3
-
21
-
-
0033296299
-
Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones
-
Available at
-
J. F. Sturm. Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones. Optimization Methods and Software, 11-12:625-653, 1999. Available at http://fewcal.kub.nl/sturm/software/sedumi.html.
-
(1999)
Optimization Methods and Software
, vol.11-12
, pp. 625-653
-
-
Sturm, J.F.1
-
23
-
-
0142027814
-
Structure and function of the feed-forward loop network motif
-
S. Mangan and U. Alon. Structure and function of the feed-forward loop network motif. PNAS, 100(21):11980-11985, 2003.
-
(2003)
PNAS
, vol.100
, Issue.21
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
24
-
-
85128527251
-
-
1 minimization. arXiv:0801.0345v2, 2007.
-
1 minimization. arXiv:0801.0345v2, 2007.
-
-
-
|