Modeling mate-finding behavior of the swarming polychaete, nereis succinea, with tangoinsilico, a scientific orkflow-based simulation system for sexual searching

Invertebrate Reproduction and Development

Volumn 52, Issue 1-2, 2008, Pages 69-80

  Fei, Xubo ^a   Lu, Shiyong ^a   Breithaupt, Thomas ^b   Hardege, JÖRG D ^b   Ram, Jeffrey l ^c  

^a Wayne State University   (United States)

^b UNIVERSITY OF HULL   (United Kingdom)

^c WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Annelida; Computer modeling; Cysteine glutathione disulfide; Data provenance; Pheromone; Polychaete; Reproductive behavior; Scientific workflow; Simulation

Indexed keywords

ANNELIDA; NEREIS SUCCINEA; POLYCHAETA;

EID: 62949107207     PISSN: 07924259     EISSN: None     Source Type: Journal    
DOI: 10.1080/07924259.2008.9652274     Document Type: Article

References (33)

1. Altintas, I., Barney, O., and Jaeger-Frank, E., 2006. “ Provenance collection support in the Kepler scientific workflow system. ”. In International Provenance and Annotation Workshop (IPAW) 118–132.
2. Bowers, S., and Ludäscher, B., 2005. “ Actor-oriented design of scientific workflows. ”. In Lecture Notes in Computer Science:Conceptual Modeling. L.M.L. Delcambre Edited by:Kop, C., Mayr, H. C., Mylopoulos, J., and Pastor, O., 369–384. Berlin:Springer-Verlag.
3. Chebotko, A., Lin, C., Fei, X., Lai, Z., Lu, S., Hua, J., and Fotouhi, F., 2007. “ VIEW:a VIsual sciEntific Workflow management system. ”. In First IEEE International Workshop on Scientific Workflows (SWF)
4. Costello, P., and Henley, C., 1971. “ Annelida (Polychaeta) Nereis Limbata. ”. In Methods for Obtaining and Handling Marine Eggs and Embryos 83–88. Marine Biological Laboratory, Woods Hole, MA
5. Cummins, S. F., Degnan, B. M., and Nagle, G. T., 2008. Characterization Of Aplysia Alb-1, a candidate water-borne protein pheromone released during egg laying. Peptides, 29:152–161.
6. Davidson, S. B., Boulakia, S. C., Eyal, A., Ludäscher, B., McPhillips, T. M., Bowers, S., Anand, M. K., and Freire, J., 2007. Provenance in scientific workflow systems. IEEE Data Eng. Bull, 30:44–50.
7. Deelman, E., and Gil, Y., 2006. Workshop on the challenges of scientific workflows (http://www.isi.edu/nsf-workflows06)
8. Dehnhardt, G., Mauck, B., Hanke, W., and Bleckmann, H., 2001. Hydrodynamic trail following in harbor seals (Phoca Vitulina). Science, 293:102–104.
9. Foster, I., Vockler, J., Wilde, M., and Zhao, Y., 2002. “ Chimera:A virtual data system for representing, querying, and automating data derivation. ”. In 14th International Conference on Scientific and Statistical Database Management (SSDBM) 37–46.
10. Freire, J., Silva, C. T., Callahan, S. P., Santos, E., Scheidegger, C. E., and Vo, H. T., 2006. “ Managing rapidly-evolving scientific workflows. ”. In International Provenance and Annotation Workshop 10–18. Chicago, IL
11. Hardege, J. D., 1999. Nereid polychaetes as model organisms for marine chemical ecology:A review. Hydrobiologia, 402:145–161.
12. Hardege, J. D., Bartels-Hardege, H., Müller, C. T., and Beckmann, M., 2004. Peptide pheromones in female Nereis Succinea. Peptides, 25:1517–1522.
13. Hardege, J. D., Müller, C. T., and Beckmann, M., 1997. A waterborne female sex pheromone in the ragworm Nereis succinia (Annelida, Polychaeta). Polychaete Res, 17:18–21.
14. Hollingsworth, D., 1995. The workflow reference model. Technical Report TC00–1003. The Workflow Management Coalition, Winchester, Hampshire, UK
15. Kiorboe, T., Bagoien, E., and Thygesen, U. H., 2005. Blind dating—mate finding in planktonic copepods. II. The pheromone cloud of Pseuocalanus elongates. Mar. Ecol. Progr. Ser, 300:117–128.
16. Lillie, F. R., and Just, E. E., 1913. Breeding habits of the heteronereis form of Nereis limbata at Woods Hole. Mass. Biol. Bull, 24:147–160.
17. Ludäscher, B., Altintas, I., Berkley, C., Higgins, D., Jaeger, E., Jones, M., Lee, E. A., Tao, J., and Zhao, Y., 2006. Scientific workflow management and the Kepler system. Concurr. Comput. Pract. Exper, 18:1039–1065.
18. Ludäscher, B., and Goble, C., 2005. Guest editors introduction to the special section on scientific workflows. SIGMOD Record, 34:3–4.
19. Miles, S., Groth, P. T., Branco, M., and Moreau, L., 2007. The requirements of using provenance in e-science experiments. J. Grid Computing, 5:1–25.
20. Miller, R. L., Mojares, J. J., and Ram, J. L., 1994. Species-specific sperm attraction in the zebra mussel, Dreissena polymorpha and the quagga mussel, Dreissena bugensis. Can. J. Zool, 72:1764–1770.
21. Oinn, T., Greenwood, M., Addis, M., Alpdemir, M. N., Ferris, J., Glover, K., Goble, C., Goderis, A., Hull, D., Marvin, D., Li, P., Lord, P., Pocock, M. R., Senger, M., Stevens, R., Wipat, A., and Wroe, C., 2006. Taverna:lessons in creating a workflow environment for the life sciences. Concurr. Comput.:Pract. Exper, 18:1067–1100.
22. Pohlmann, K., Atema, J., and Breithaupt, T., 2004. The importance of the lateral line in nocturnal predation of piscivorous catfish. J. Exp. Biol, 207:2971–2978.
23. Pohlmann, K., Grasso, F. W., and Breithaupt, T., 2001. Tracking wakes:the nocturnal predatory strategy of piscivorous catfish. Proc. Nat. Acad. Sci. USA, 98:7371–7374.
24. Ram, J. L., Fei, X., Danaher, S. M., Lu, S., Breithaupt, T., and Hardege, J. D., 2008. Finding females:Pheromone-guided reproductive tracking behavior by male Nereis succinea in the marine environment. J. Exp. Biol, 211:757–765.
25. Ram, J. L., and Hardege, J. D., 2005. Nereis succinea nuptial behavior:Does size matter?. Invert. Reprod. Develop, 48:89–94.
26. Ram, J. L., Müller, C. T., Beckmann, M., and Hardege, J. D., 1999. The spawning pheromone cysteine-glutathione disulfide (‘nereithione’) arouses a multicomponent nuptial behaviour and electrophysiological activity in Nereis succinea males. FASEB J, 13:945–952.
27. Townsend, G., 1939a. On the nature of the material elaborated by fertilizable Nereis eggs inducing spawning of the male. Biol. Bull, 77:306–307.
28. Townsend, G., 1939. “ The spawning reaction and spawning integration of ”. In Nereis limbata with emphasis upon chemical stimulation. Ph.D. Thesis, University of Chicago, Chicago b
29. Tsalgatidou, A., Athanasopoulos, G., Pantazoglou, M., Pautasso, C., Heinis, T., Grnmo, R., Hoff, H., Berre, A., Glittum, M., and Topouzidou, S., 2006. Developing scientific workflows from heterogeneous services. SIGMOD Record, 35:22–28.
30. van der Aalst, W. M.P., Aldred, L., Dumas, M., and ter Hofstede, A. H.M., 2004. “ Design and Implementation of the YAWL System. ”. In Lecture Notes in Computer Science:Advanced Information Systems Engineering Edited by:Persson, A., and Stirna, J., 142–159. Berlin:Springer-Verlag.
31. Yafremava, L. S., Anthony, C. W., Lane, L., Campbell, J. K., and Gillette, R., 2007. Orienting and avoidance turning are precisely computed by the predatory sea-slug Pleurobrancheae californica McFarland. J. Exp. Biol, 210:561–569.
32. Zeeck, E., Harder, T., and Beckmann, M., 1998a. Inosine, Lglutamic acid and L-glutamine as components of a sex pheromone complex of the marine polychaete Nereis succinea (Annelida:Polychaeta). Chemoecol, 8:77–84.
33. Zeeck, E., Müller, C. T., Beckmann, M., Hardege, J. D., Papke, U., Sinnwell, V., Schroeder, F. C., and Francke, W., 1998b. Cysteine-glutathione disulfide, the sperm-release pheromone of the marine polychaete Nereis succinea (Annelida:Polychaeta). Chemoecol, 8:33–38.