The requirements of using provenance in e-science experiments

Journal of Grid Computing

Volumn 5, Issue 1, 2007, Pages 1-25

  Miles, Simon ^a   Groth, Paul ^a   Branco, Miguel ^a   Moreau, Luc ^a  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

E Science; Grid; Provenance; Requirements; Use case; Workflow

Indexed keywords

DATA RECORDING; PROGRAM DOCUMENTATION; REQUIREMENTS ENGINEERING; SOFTWARE ARCHITECTURE;

E-SCIENCE; PROVENANCE;

GRID COMPUTING;

EID: 34250328839     PISSN: 15707873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10723-006-9055-3     Document Type: Article

References (43)

1. Addis, M., Ferris, J., Greenwood, M., Marvin, D., Li, P., Oinn, T., Wipat, A.: Experiences with eScience workflow specification and enactment in bioinformatics. In: Cox, S. (ed.) Proceedings of the UK OST e-Science Second All Hands Meeting 2003 (AHM-03), pp. 459-467, Nottingham, UK (2003)
2. Alonso, G., Abbadi, A.E.: GOOSE: Geographic object oriented support environment. In: Proceedings of the ACM workshop on Advances in Geographic Information Systems, pp. 38-49, Arlington, Virginia (1993)
3. AlonsW, G., Hagen, C.: Geo-opera: workflow concepts for spatial processes. In: Proceedings of 5th International Symposium on Spatial Databases (SSD -97), pp. 238-258, Berlin, Germany (1997)
4. Andrews, T., Curbera, F., Dholakia, H., Goland, Y., Klein, J., Leymann, F., Liu, K., Roller, D., Smith, D., Thatte, S., Trickovic, I., Weerawarana, S.: Business process execution language for web services version 1.1. http://www-128.ibm.com/developerworks/libraryws-bpel/ (2006)
5. Ashri, R., Payne, T., Marvin, D., Surridge, M., Taylor, S.: Towards a semantic web security infrastructure. In: Semantic Web Services, AAAI Spring Symposium Series. Published as part of AAAI Technical Report SS-04-06, no page numbers given (2004)
6. Becker, R.A., Chambers, J.M.J.M.: Auditing of data analyses. SIAM J. Sci. Statist. Comput. 9 (4), 747-760 (1988)
7. Buneman, P., Khanna, S., Tajima, K., Tan, W.: Archiving scientific data. In: Proceedings of the 2002 ACM SIGMOD International Conference on Management of Data, pp. 1-12 (2002)
8. Buneman, A., Khanna, S., Tan, W.: Why and where: a characterization of data provenance. In: Int. Conf. on Databases Theory (ICDT). pp. 316-330 (2001)
9. Consultative Committee for Space Data Systems: Reference Model for an Open Archival Information System (OAIS). Technical report 650.0-B-1, National Aeronautics and Space Administration, Washington, DC 20546 USA (2002)
10. Crawford, M.J., Frey, J.G., VanderNoot, T.J., Zhao, Y.G.: Investigation of transport across an immiscible liquid/liquid interface- electrochemical and second harmonic generation studies. J. Chem. Soc., Faraday Trans. 92 (8), 1369-1373 (1996)
11. Cui, Y., Widom, J., Wiener, J.L.: Tracing the lineage of view data in a warehousing environment. ACM Trans. Database Syst. 25 (2), 179-227 (2000)
12. e-Demand: http://www.comp.leeds.ac.uk/edemand (2006)
13. Fan, H., Poulovassilis, A.: Tracing data lineage using schema transformation pathways. In: Omelayenko, B., Klein, M. (eds.) Knowledge Transformation for the Semantic Web, pp. 64-79, IOS Press, Amsterdam, The Netherlands (2003)
14. Foster, I., Kesselman, C., Tuecke, S.: The Anatomy of the Grid: Enabling Scalable Virtual Organizations. Int. J. Supercomput. Appl. 15 (3), 200-222 (2001)
15. Foster, I., VocklAr, J., Wilde, M., Zhao, Y.: The virtual data Grid: a new model and architecture for data-intensive collaboration. In: Proceedings of the CIDR 2003 First Biennial Conference on Innovative Data Systems Research (non-published) (2003)
16. FosAer, I., Voeckler, J., Wilde, M., Zhao, Y.: Chimera: a virtual data system for representing, querying and automating data derivation. In: Proceedings of the 14th Conf. on Scientific and Statistical Database Management. pp. 37-46 (2002)
17. GenBank: http://www.ncbi.nlm.nih.gov/Genbank/ (2006)
18. Gene Ontology Consortium: http://www.geneontology.org/ (2006)
19. Greenwood, M., Goble, C., Stevens, R., Zhao, J., Addis, M., Marvin, D., Moreau, L., Oinn, T.: Provenance of e-Science experiments-experience from Bioinformatics. In: Cox, S.J. (ed.) Proceedings of the UK e-Science All Hands Meeting 2003, pp. 223-226 (2003)
20. Groth, P., Luck, M., Moreau, L.: A protocol for recording provenance in service-oriented Grids. In: Proceedings of the 8th International Conference on Principles of Distributed Systems (OPODIS-04), vol. 3544, pp. 124-139, Grenoble, France (2004)
21. Groth, P., Miles, S., Fang, W., Wong, S.C., Zauner, K.-P., Moreau, L.: Recording and using provenance in a protein compressibility experiment. In: Proceedings of the 14th IEEE International Symposium on High Performance Distributed Computing (HPDC-05). Forthcoming (2005)
22. Hughes, G., Mills, H., de Roure, D., Frey, J.G., Moreau, L., Schraefel, M.C., Smith, G., Zaluska,AE.: The semantic smart laboratory: a system for supporting the chemical eScientist. Org. Biomol. Chem. 2 (2), 1-10 (2004)
23. Lanter, D.: Design of a lineage-based meta-data base for GIS. Cartogr. Geogr. Inf. Syst. 18 (4), 255-261 (1991a)
24. Lanter, D.T Lineage in GIS: the problem and a solution. Technical report 90-6, National Center for Geographic Information and Analysis (NCGIA), UCSB, Santa Barbara, CA (1991b)
25. Lanter, D., Essinger, R.: User-centered graphical user interface design for GIS. Technical report 91-6, National Center for Geographic Information and Analysis (NCGIA). UCSB (1991)
26. Marathe, A.P.: Tracing lineage of array data. J. Intel. Inf. Syst. 17 (2-3), 193-214 (2001)
27. Myers, J., Chappell, A., Elder, M., Geist, A., Schwidder, J.: Re-integrating the research record. IEEE Comput. Sci. Eng. 5 (3), 44-50 (2003a)
28. Myers, J.D., Pancerella, C., Lansing, C., Schuchardt, K.L., Didier, B.: Multi-scale science: Supporting emerging practice with semantically derived provenance. In: ISWC 2003 Workshop: Semantic Web Technologies for Searching and Retrieving Scientific Data. Sanibel Island, Florida, USA. Online Proceedings (2003b)
29. myGrid: http://www.mygrid.org.uk (2006)
30. Pope, A.: The CORBA Reference Guide: Understanding the Common Object Request Broker Architecture. Addison Wesley, Reading, MA (1997)
31. Proteomics Standards Initiative: http://psidev.sourceforge.net (2006)
32. Ruth, P., Xu, D., Bhargava, B.K., Regnier, F.: E-notebook middleware for acccountability and reputation based trust in distributed data sharing communities. In: Proceedings 2nd Int. Conf. on Trust Management, Oxford, UK, vol. 2995 of LNCS. pp. 161-175 (2004)
33. Seltzer, M., Muniswamy-Reddy, K.-K., Holland, D.A., Braun, U., Ledlie, J.: Provenance-aware storage systems. Technical report, Harvard University Computer Science Technical Report TR-18-05 (2005)
34. Szomszor, M., Moreau, L.: Recording and reasoning over data provenance in web and Grid services. In: Int. Conf. on Ontologies, Databases and Applications of Semantics, vol. 2888 of LNCS. Catania, Sicily, Italy, pp. 603-620 (2003)
35. Tan, V.H.K.: Interaction tracing for mobile agent security. PhD thesis, University of Southampton (2004)
36. Townend, P., Groth, P., Xu, J.: A provenance-aware weighted fault tolerance scheme for service-based applications. In: Proceedings of the 8th IEEE International Symposium on Object-oriented Real-time distributed Computing (ISORC 2005), pp. 258-266 (2005)
37. Vahdat, A., Anderson, T.: Transparent result caching. In: Proceedings of the 1998 USENIX Technical Conference, New Orleans, LA, pp. 25-37 (1998)
38. Waldo, J.: The Jini Specifications (2nd edn), Addison-Wesley, Reading, MA (2000)
39. Web Services Architecture: http://www.w3.org/TR/ws-arch/ (2006)
40. Woodruff, A., Stonebraker, M.: Supporting fine-grained data lineage in a database visualization environment. In: Proceedings of the 13th International Conference on Data Engineering, Birmingham, England, pp. 91-102 (1997)
41. Woodruff, A.G.: Data lineage and information density in database visualization. Ph.D. thesis, University of California at Berkeley (1998)
42. Zhao, J., Goble, C., Greenwood, M., Wroe, C., Stevens, R.: Annotating, linking and browsing provenance logs for e-Science. In: Proceedings of the Workshop on Semantic Web Technologies for Searching and Retrieving Scientific Data. pp. 92-106, Online Proceedings (2003)
43. Zhao, J., Wroe, C., Goble, C., Stevens, R., Quan, D., Greenwood, M.: Using semantic web technologies for representing e-Science provenance. In: Proceedings of Third International Semantic Web Conference (ISWC2004), vol. 3298 of LNCS, pp. 92-106, Hiroshima, Japan (2004)