Identification and molecular characterization of PERV Gamma1 long terminal repeats

Molecules and Cells

Volumn 27, Issue 1, 2009, Pages 119-123

  Huh, Jae Won ^a,b   Kim, Dae Soo ^a,b   Ha, Hong Seok ^a   Ahn, Kung ^a   Chang, Kyu Tae ^b   Cho, Byung Wook ^a   Kim, Heui Soo ^a  

^a Pusan National University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

Bioinformatics; LTR element; PERV; Pig; Xenotransplantation

Indexed keywords

GENE PRODUCT; PORCINE ENDOGENOUS RETROVIRUS GAMMA 1; UNCLASSIFIED DRUG;

ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; ENDOGENOUS RETROVIRUS; GENE DELETION; GENE FUNCTION; GENE IDENTIFICATION; GENE INSERTION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; LONG TERMINAL REPEAT; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SWINE; TANDEM REPEAT; ANIMAL; GENETICS; MOLECULAR GENETICS; VIROLOGY;

PORCINE ENDOGENOUS RETROVIRUS; SUIDAE;

ANIMALS; BASE SEQUENCE; ENDOGENOUS RETROVIRUSES; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SUS SCROFA; TERMINAL REPEAT SEQUENCES; TRANSCRIPTION, GENETIC;

EID: 62849085612     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10059-009-0013-3     Document Type: Article

References (35)

1. D.E. Akiyoshi M. Denaro H. Zhu J.L. Greenstein P.T. Banerjee J.A. Fishman 1998 Identification of a full-length cDNA for an endogenous retrovirus of miniature swine J. Virol. 72 4503 4507 9557749 1:CAS:528:DyaK1cXis1KlsLk%3D
2. S.F. Altschul T.L. Madden A.A. Schaffer J. Zhang W. Zhang W. Miller D.J. Lipman 1997 Gapped Blast and PSI-BLAST: a new generation of protein database search program Nucleic Acids Res. 25 3389 3402 9254694 1:CAS:528: DyaK2sXlvFyhu7w%3D 10.1093/nar/25.17.3389 (Pubitemid 27359211)
3. F. Czauderna N. Fischer K. Boller R. Kurth R.R. Tonjes 2000 Establishment and characterization of molecular clones of porcine endogenous retroviruses replicating on human cells J. Virol. 74 4028 4038 10756014 1:CAS:528: DC%2BD3cXislGrtbw%3D 10.1128/JVI.74.9.4028-4038.2000 (Pubitemid 30214407)
4. J. Denner V. Specke U. Thiesen A. Karlas R. Kurth 2003 Genetic alteration of the long terminal repeat of an ecotropic porcine endogenous retrovirus during passage in human cells Virology 314 125 133 14517066 1:CAS:528: DC%2BD3sXnsVWqsrk%3D 10.1016/S0042-6822(03)00428-8 (Pubitemid 37158012)
5. B. Dieckhoff A. Karlas A. Hofmann W.A. Kues B. Petersen A. Pfeifer H. Niemann R. Kurth J. Denner 2007 Inhibition of porcine endogenous retroviruses (PERVs). in primary porcine cells by RNA interference using lentiviral vectors Arch. Virol. 152 629 634 17106623 1:CAS:528:DC%2BD2sXitlCqsLc%3D 10.1007/s00705-006-0868-y (Pubitemid 46363603)
6. I. Harrison Y. Takeuchi B. Bartosch J.P. Stoye 2004 Determinants of high titer in recombinant porcine endogenous retroviruses J. Virol. 78 13871 13879 15564495 1:CAS:528:DC%2BD2cXhtFSisLzO 10.1128/JVI.78.24.13871-13879.2004 (Pubitemid 39612784)
7. C. Herring G. Quinn R. Bower N. Parsons N.A. Logan A. Brawley K. Elsome A. Whittam X.M. Fernandez-Suarez D. Cunningham, et al. 2001 Mapping full-length porcine endogenous retroviruses in a large white pig J. Virol. 75 12252 12265 11711616 1:CAS:528:DC%2BD3MXovVygt7Y%3D 10.1128/JVI.75.24.12252-12265.2001 (Pubitemid 33115898)
8. J.W. Huh K.W. Hong J.M. Yi T.H. Kim O. Takenaka W.H. Lee H.S. Kim 2003 Molecular phylogeny and evolution of the human endogenous retrovirus HERV-W LTR family in hominoid primates Mol. Cells 15 122 126 12661771 1:CAS:528: DC%2BD3sXjvFGjsbw%3D
9. J.W. Huh H.S. Ha Y.J. Kim J.R. Lee D.S. Kim B.W. Cho H.S. Kim 2007 Methylation and promoter activity of long terminal repeats from porcine endogenous retroviruses in the Pig, Sus scrofa Korean J. Genet. 29 171 176 1:CAS:528:DC%2BD2sXptVylt7o%3D
10. J.W. Huh B.W. Cho D.S. Kim H.S. Ha J.M. Yi Y.J. Kim J.R. Lee K. Ahn W.H. Lee H.S. Kim 2007 Long terminal repeats of porcine endogenous retroviruses in Sus scrofa Arch. Virol. 52 2271 2276 10.1007/s00705-007-1049-3 (Pubitemid 350215781)
11. A. Karlas R. Kurth J. Denner 2004 Inhibition of porcine endogenous retroviruses by RNA interference: increasing the safety of xenotransplantation Virology 325 18 23 15231382 1:CAS:528:DC%2BD2cXlsVSnsbg%3D 10.1016/j.virol.2004. 04.022 (Pubitemid 38844766)
12. N. Klymiuk M. Müller G. Brem B. Aigner 2006 Phylogeny, recombination and expression of porcine endogenous retrovirus gamma2 nucleotide sequences J. Gen. Virol. 87 977 986 16528048 1:CAS:528:DC%2BD28XjsVWhu70%3D 10.1099/vir.0.81552-0
13. U. Krach N. Fischer F. Czauderna R.R. Tonjes 2001 Comparison of replication-competent molecular clones of porcine endogenous retrovirus class A and class B derived from pig and human cells J. Virol. 75 5465 5472 11356953 1:CAS:528:DC%2BD3MXjvFyrsL4%3D 10.1128/JVI.75.12.5465-5472.2001 (Pubitemid 32488139)
14. S. Kumar K. Tamura I.B. Jakobsen M. Nei 2001 MEGA2: molecular evolutionary genetics analysis software Bioinformatics 17 1244 1245 11751241 1:CAS:528:DC%2BD38XmtVCktQ%3D%3D 10.1093/bioinformatics/17.12.1244
15. P. Le Tissier J.P. Stoye Y. Takeuchi C. Patience R.A. Weiss 1997 Two sets of human-tropic pig retrovirus Nature 389 681 682 9338777 10.1038/39489 (Pubitemid 27458943)
16. J.H. Lee G.C. Webb R.D. Allen C. Moran 2002 Characterizing and mapping porcine endogenous retroviruses in Westran pigs J. Virol. 76 5548 5556 11991983 1:CAS:528:DC%2BD38XjslGntbs%3D 10.1128/JVI.76.11.5548-5556.2002 (Pubitemid 34517905)
17. J. Ling W. Pi R. Bollag S. Zeng M. Keskintepe H. Saliman S. Krantz B. Whitney D. Tuan 2002 The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells J. Virol. 76 2410 2423 11836419 1:CAS:528:DC%2BD38Xht1Kqu7s%3D 10.1128/jvi.76.5.2410-2423.2002 (Pubitemid 34150709)
18. R. Mang J. Maas X. Chen J. Goudsmit A.C. van der Kuyl 2001 Identification of a novel type C porcine endogenous retrovirus: evidence that copy number of endogenous retroviruses increases during host inbreeding J. Gen. Virol. 82 1829 1834 11457988 1:CAS:528:DC%2BD3MXls1WltrY%3D
19. U. Martin V. Kiessl H. Blusch A. Haverich K. von der Helm T. Herden G. Steinhof 1998 Expression of pig endogenous retrovirus by primary porcine endotherial cells and infection of human cells Lancet 352 692 694 9728985 1:STN:280:DyaK1czpslajsA%3D%3D 10.1016/S0140-6736(98)07144-X
20. Y. Moalic Y. Blanchard H. Felix A. Jestin 2006 Porcine endogenous retrovirus integration sites in the human genome: features in common with those of murine leukemia virus J. Virol. 80 10980 10988 16928752 1:CAS:528: DC%2BD28Xht1Khur3E 10.1128/JVI.00904-06 (Pubitemid 44706539)
21. M. Niebert R.R. Tonjes 2005 Evolutionary spread and recombination of porcine endogenous retroviruses in the suiformes J. Virol. 79 649 654 15596862 1:CAS:528:DC%2BD2MXhslCjsw%3D%3D 10.1128/JVI.79.1.649-654.2005 (Pubitemid 39648421)
22. M. Niebert C. Rogel-Gaillard P. Chardon R.R. Tonjes 2002 Characterization of chromosomally assigned replication-competent gamma porcine endogenous retroviruses derived from a large white pig and expression in human cells J. Virol. 76 2714 2720 11861838 1:CAS:528:DC%2BD38XitV2rurY%3D 10.1128/JVI.76.6. 2714-2720.2002 (Pubitemid 34184857)
23. C. Patience Y. Takeuchi R.A. Weiss 1997 Infection of human cells by an endogenous retrovirus of pigs Nat. Med. 3 282 286 9055854 1:CAS:528: DyaK2sXhsFGlurk%3D 10.1038/nm0397-282 (Pubitemid 27112924)
24. C. Patience W.M. Switzer Y. Takeuchi D.J. Griffiths M.E. Goward W. Heneine J.P. Stoye R.A. Weiss 2001 Multiple groups of novel retroviral genomes in pigs and related species J. Virol. 75 2771 2775 11222700 1:CAS:528: DC%2BD3MXhsFWiu74%3D 10.1128/JVI.75.6.2771-2775.2001 (Pubitemid 32185040)
25. T. Preuss N. Fischer K. Boller R.R. Tonjes 2006 Isolation and characterization of an infectious replication-competent molecular clone of ecotropic porcine endogenous retrovirus class C J. Virol. 80 10258 10261 17005704 1:CAS:528:DC%2BD28XhtVyls7vF 10.1128/JVI.01140-06 (Pubitemid 44522620)
26. G. Quinn G. Langford 2001 The porcine endogenous retro-virus long terminal repeat contains a single nucleotide polymorphism that confers distinct differences in estrogen receptor binding affinity between PERV A and PERV B/C subtypes Virology 286 83 90 11448161 1:CAS:528:DC%2BD3MXltVemtLw%3D 10.1006/viro.2001.0996 (Pubitemid 32675468)
27. G. Scheef N. Fischer U. Krach R.R. Tonjes 2001 The number of a U3 repeat box acting as an enhancer in long terminal repeats of polytropic replication-competent porcine endogenous retroviruses dynamically fluctuates during serial virus passages in human cells J. Virol. 75 6933 6940 11435573 1:CAS:528:DC%2BD3MXlsVChu7g%3D 10.1128/JVI.75.15.6933-6940.2001 (Pubitemid 32641580)
28. G. Scheef N. Fischer E. Flory I. Schmitt R.R. Tonjes 2002 Transcriptional regulation of porcine endogenous retrovi-ruses released from porcine and infected human cells by hetero-trimeric protein complex NF-Y and impact of immunosuppres-sive drugs J. Virol. 76 12553 12563 12438581 1:CAS:528: DC%2BD38XptVygtbo%3D 10.1128/JVI.76.24.12553-12563.2002 (Pubitemid 35386941)
29. M.J. Sellars T. Vuocolo L.A. Leeton G.J. Coman B.M. Degnan N.P. Preston 2007 Real-time RT-PCR quantification of Kuruma shrimp transcripts: a comparison of relative and absolute quantification procedures J. Biotechnol. 129 391 399 17350129 1:CAS:528:DC%2BD2sXktFyqsbs%3D 10.1016/j.jbiotec.2007.01.029 (Pubitemid 46562491)
30. D.M. Takefman G.T. Spear M. Saifuddin C.A. Wilson 2002 Human CD59 incorporation into porcine endogenous retrovirus particles: implications for the use of transgenic pigs for xenotransplantation J. Virol. 76 1999 2002 11799196 1:CAS:528:DC%2BD38XnvF2jug%3D%3D 10.1128/JVI.76.4.1999-2002.2002 (Pubitemid 34094648)
31. Y. Takeuchi C. Patience S. Magre R.A. Weiss P.T. Banerjee P. Le Tissier J.P. Stoye 1998 Host range and interference studies of three classes of pig endogenous retrovirus J. Virol. 72 9986 9991 9811736 1:CAS:528: DyaK1cXns1Wksrw%3D
32. R.R. Tönjes M. Niebert 2003 Relative age of proviral porcine endogenous retrovirus sequences in Sus scrofa based on the molecular clock hypothesis J. Virol. 77 12363 12368 14581574 10.1128/JVI.77.22.12363-12368.2003 (Pubitemid 37339890)
33. C.A. Wilson S.W. Wong J. Muller C.E. Davidson T.M. Rose P. Burd 1998 Type C retrovirus released from porcine primary peripheral blood mononuclear cells infects human cells J. Virol. 72 3082 3087 9525633 1:CAS:528:DyaK1cXhvVOjsb0%3D
34. C.A. Wilson S. Laeeq A. Ritzhaupt W. Colon-Moran F.K. Yo-shimura 2003 Sequence analysis of porcine endogenous retrovirus long terminal repeats and identification of transcriptional regulatory regions J. Virol. 77 142 149 12477819 1:CAS:528:DC%2BD3sXkt1Wh 10.1128/JVI.77.1.142-149.2003 (Pubitemid 36004954)
35. W.A. Woods T.S. Papas H. Hirumi M.A. Chirigos 1973 Antigenic and biochemical characterization of the C-type particle of the stable porcine kidney cell line PK-15 J. Virol. 12 1184 1186 4128828 1:CAS:528:DyaE2cXhtFKjuw%3D%3D