메뉴 건너뛰기




Volumn 293, Issue 2, 2009, Pages 240-247

A culture-dependent bacterial community structure analysis based on liquid cultivation and its application to a marine environment

Author keywords

Bacterial community structure; Diversity; Liquid cultivation; Phylogenetic analysis; Seawater

Indexed keywords

RIBOSOME RNA; SEA WATER;

EID: 62549087808     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2009.01536.x     Document Type: Article
Times cited : (16)

References (36)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W Schleifer K-H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59 : 143 169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 3
    • 16844383381 scopus 로고    scopus 로고
    • Flavobacterium granuli sp. nov., isolated from granules used in a wastewater treatment plant
    • Aslam Z, Im WT, Kim MK Lee ST (2005) Flavobacterium granuli sp. nov., isolated from granules used in a wastewater treatment plant. Int J Syst Evol Micr 55 : 747 751.
    • (2005) Int J Syst Evol Micr , vol.55 , pp. 747-751
    • Aslam, Z.1    Im, W.T.2    Kim, M.K.3    Lee, S.T.4
  • 4
    • 0033277348 scopus 로고    scopus 로고
    • Bacterial viability and culturability
    • Barer MR Harwood CR (1999) Bacterial viability and culturability. Adv Microb Physiol 41 : 93 137.
    • (1999) Adv Microb Physiol , vol.41 , pp. 93-137
    • Barer, M.R.1    Harwood, C.R.2
  • 5
    • 0036743258 scopus 로고    scopus 로고
    • Diversity of grass-associated Microbacteriaceae isolated from the phyllosphere and litter layer after mulching the sward; Polyphasic characterization of Subtercola pratensis sp. nov., Curtobacterium herbarum sp. nov. and Plantibacter flavus gen. nov., sp. nov
    • Behrendt U, Ulrich A, Schumann P, Naumann D Suzuki K (2002) Diversity of grass-associated Microbacteriaceae isolated from the phyllosphere and litter layer after mulching the sward; polyphasic characterization of Subtercola pratensis sp. nov., Curtobacterium herbarum sp. nov. and Plantibacter flavus gen. nov., sp. nov. Int J Syst Evol Micr 52 : 1441 1454.
    • (2002) Int J Syst Evol Micr , vol.52 , pp. 1441-1454
    • Behrendt, U.1    Ulrich, A.2    Schumann, P.3    Naumann, D.4    Suzuki, K.5
  • 7
    • 0027338910 scopus 로고
    • Viability and isolation of marine bacteria by dilution culture: Theory, procedures, and initial results
    • Button DK, Schut F, Quang P, Martin R Robertson BR (1993) Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results. Appl Environ Microb 59 : 881 891.
    • (1993) Appl Environ Microb , vol.59 , pp. 881-891
    • Button, D.K.1    Schut, F.2    Quang, P.3    Martin, R.4    Robertson, B.R.5
  • 8
    • 33747879303 scopus 로고    scopus 로고
    • Shimia marina gen. nov., sp. nov., a novel bacterium of the Roseobacter clade isolated from biofilm in a coastal fish farm
    • Choi DH Cho BC (2006) Shimia marina gen. nov., sp. nov., a novel bacterium of the Roseobacter clade isolated from biofilm in a coastal fish farm. Int J Syst Evol Micr 56 : 1869 1873.
    • (2006) Int J Syst Evol Micr , vol.56 , pp. 1869-1873
    • Choi, D.H.1    Cho, B.C.2
  • 10
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon SA Giovannoni SJ (2002) High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl Environ Microb 68 : 3878 3885.
    • (2002) Appl Environ Microb , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 11
    • 33644865958 scopus 로고    scopus 로고
    • Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline
    • Daffonchio D Borin S Biodeep Scientific Party et al 2006) Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline. Nature 440 : 203 207.
    • (2006) Nature , vol.440 , pp. 203-207
    • Daffonchio, D.1    Borin Scientific Party S.Biodeep2    Al, E.3
  • 12
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
    • Eichner CA, Erb RW, Timmis KN Wagner-Döbler I (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microb 65 : 102 109.
    • (1999) Appl Environ Microb , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3    Wagner-Döbler, I.4
  • 13
    • 0033916615 scopus 로고    scopus 로고
    • Culturability and in situ abundance of peragic bacteria from the North Sea
    • Eilers H, Pernthaler J, Gröckner FO Amann R (2000) Culturability and in situ abundance of peragic bacteria from the North Sea. Appl Environ Microb 66 : 3044 3051.
    • (2000) Appl Environ Microb , vol.66 , pp. 3044-3051
    • Eilers, H.1    Pernthaler, J.2    Gröckner, F.O.3    Amann, R.4
  • 15
    • 0342940789 scopus 로고    scopus 로고
    • Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater
    • González JM Moran MA (1997) Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microb 63 : 4237 4242.
    • (1997) Appl Environ Microb , vol.63 , pp. 4237-4242
    • González, J.M.1    Moran, M.A.2
  • 16
    • 0001400448 scopus 로고
    • Application of statistics to problems in bacteriology I. A means of determining bacterial population by the dilution method
    • Halvorson HO Ziegler NR (1932) Application of statistics to problems in bacteriology I. A means of determining bacterial population by the dilution method. J Bacteriol 25 : 101 121.
    • (1932) J Bacteriol , vol.25 , pp. 101-121
    • Halvorson, H.O.1    Ziegler, N.R.2
  • 17
    • 0032959907 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov
    • Hedlund BP, Geiselbrecht AD, Bair T Staley JT (1999) Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov. Appl Environ Microb 65 : 251 259.
    • (1999) Appl Environ Microb , vol.65 , pp. 251-259
    • Hedlund, B.P.1    Geiselbrecht, A.D.2    Bair, T.3    Staley, J.T.4
  • 19
    • 0000662102 scopus 로고
    • Existance of obligately oligotrophic bacteria as a dominant population in the South China Sea and the West Pacific Ocean
    • Ishida Y, Eguchi M Kadota H (1986) Existance of obligately oligotrophic bacteria as a dominant population in the South China Sea and the West Pacific Ocean. Mar Ecol Prog Ser 30 : 197 203.
    • (1986) Mar Ecol Prog ser , vol.30 , pp. 197-203
    • Ishida, Y.1    Eguchi, M.2    Kadota, H.3
  • 20
    • 0344629203 scopus 로고    scopus 로고
    • Bias and artifacts in multitemplate polymerase chain reactions (PCR)
    • Kanagawa T (2003) Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96 : 317 323.
    • (2003) J Biosci Bioeng , vol.96 , pp. 317-323
    • Kanagawa, T.1
  • 21
    • 0030620894 scopus 로고    scopus 로고
    • Determination of active marine bacterioplankton: A comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining
    • Karner M Fuhrman JA (1997) Determination of active marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. Appl Environ Microb 63 : 1208 1213.
    • (1997) Appl Environ Microb , vol.63 , pp. 1208-1213
    • Karner, M.1    Fuhrman, J.A.2
  • 23
    • 0018820459 scopus 로고
    • Distribution of viable marine bacteria in neritic seawater around Japan
    • Kogure K, Shimidu U Taga N (1980) Distribution of viable marine bacteria in neritic seawater around Japan. Can J Microbiol 26 : 318 323.
    • (1980) Can J Microbiol , vol.26 , pp. 318-323
    • Kogure, K.1    Shimidu, U.2    Taga, N.3
  • 24
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins TD, Britschgi TB, Krest RL Giovannoni SJ (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40 : 148 158.
    • (1995) Limnol Oceanogr , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 25
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappé MS, Connon SA, Vergin KL Giovannoni SJ (2002) Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418 : 630 633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappé, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 26
    • 0027337265 scopus 로고
    • Isolation of typical marine bacteria by dilution culture: Growth, maintenance, and characteristics of isolates under laboratory conditions
    • Schut F, De Vries EJ, Gottschal JC, Robertson BR, Harder W, Prins RA Button DK (1993) Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions. Appl Environ Microb 59 : 2150 2160.
    • (1993) Appl Environ Microb , vol.59 , pp. 2150-2160
    • Schut, F.1    De Vries, E.J.2    Gottschal, J.C.3    Robertson, B.R.4    Harder, W.5    Prins, R.A.6    Button, D.K.7
  • 27
    • 0000549946 scopus 로고    scopus 로고
    • Oligotrophy and pelagic marine bacteria: Facts and fiction
    • Schut F, Prins RA Gottschal JC (1997) Oligotrophy and pelagic marine bacteria: facts and fiction. Aquat Microb Ecol 12 : 177 202.
    • (1997) Aquat Microb Ecol , vol.12 , pp. 177-202
    • Schut, F.1    Prins, R.A.2    Gottschal, J.C.3
  • 28
    • 0842285837 scopus 로고    scopus 로고
    • A newly discovered Roseobacter cluster in temperate and polar oceans
    • Selje N, Simon M Brinkhoff T (2004) A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427 : 445 448.
    • (2004) Nature , vol.427 , pp. 445-448
    • Selje, N.1    Simon, M.2    Brinkhoff, T.3
  • 30
    • 37649009480 scopus 로고    scopus 로고
    • Comparative analyses of viable bacterial counts in foods and seawater under microplate based liquid and conventional agar plate cultivation: Increased culturability of marine bacteria under liquid cultivation
    • Shigematsu T, Ueno S, Tsuchida Y, Hayashi M, Okonogi H, Masaki H Fujii T (2007) Comparative analyses of viable bacterial counts in foods and seawater under microplate based liquid and conventional agar plate cultivation: increased culturability of marine bacteria under liquid cultivation. Biosci Biotech Bioch 71 : 3093 3097.
    • (2007) Biosci Biotech Bioch , vol.71 , pp. 3093-3097
    • Shigematsu, T.1    Ueno, S.2    Tsuchida, Y.3    Hayashi, M.4    Okonogi, H.5    Masaki, H.6    Fujii, T.7
  • 31
    • 23644439196 scopus 로고    scopus 로고
    • Culturabilty and coexistence of colony-forming and single-cell marine bacterioplankton
    • Simu K, Holmfeldt K, Zweifel UL Hagström Å (2005) Culturabilty and coexistence of colony-forming and single-cell marine bacterioplankton. Appl Environ Microb 71 : 4793 4800.
    • (2005) Appl Environ Microb , vol.71 , pp. 4793-4800
    • Simu, K.1    Holmfeldt, K.2    Zweifel, U.L.3    Hagström, Å.4
  • 32
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E, Leeflang P, Gommans S, van den Broek J, van Mil S Wernars K (2001) Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl Environ Microb 67 : 2284 2291.
    • (2001) Appl Environ Microb , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    Van Den Broek, J.4    Van Mil, S.5    Wernars, K.6
  • 33
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley JT Konopka A (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39 : 321 346.
    • (1985) Annu Rev Microbiol , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 35
    • 0025960666 scopus 로고
    • Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: Emendation of generic descriptions and proposal of Arcobacter gen. nov
    • Vandamme P, Falsen E, Rossau R, Hoste B, Segers P, Tytgat R DeLey J (1991) Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int J Syst Bacteriol 41 : 88 103.
    • (1991) Int J Syst Bacteriol , vol.41 , pp. 88-103
    • Vandamme, P.1    Falsen, E.2    Rossau, R.3    Hoste, B.4    Segers, P.5    Tytgat, R.6    Deley, J.7
  • 36
    • 33846501411 scopus 로고    scopus 로고
    • Donghicola eburneus gen. nov., sp. nov., isolated from seawater of the East Sea in Korea
    • Yoon JH, Kang SJ Oh TK (2007) Donghicola eburneus gen. nov., sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Micr 57 : 73 76.
    • (2007) Int J Syst Evol Micr , vol.57 , pp. 73-76
    • Yoon, J.H.1    Kang, S.J.2    Oh, T.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.