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Volumn 106, Issue 8, 2009, Pages 2543-2548

Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays

Author keywords

Anaphase promoting complex; EFA; Post translational modification proteomics

Indexed keywords

ANAPHASE PROMOTING COMPLEX; BUB3 PROTEIN; CELL EXTRACT;

EID: 62449196769     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0812892106     Document Type: Article
Times cited : (78)

References (34)
  • 1
    • 30344466977 scopus 로고    scopus 로고
    • The processivity of multiubiquitination by the APC determines the order of substrate degradation
    • Rape M, Reddy SK, Kirschner MW(2006)The processivity of multiubiquitination by the APC determines the order of substrate degradation. Cell 124:89-103.
    • (2006) Cell , vol.124 , pp. 89-103
    • Rape, M.1    Reddy, S.K.2    Kirschner, M.W.3
  • 2
    • 28444460297 scopus 로고    scopus 로고
    • Global analysis of protein phosphorylation in yeast
    • Ptacek J, et al. (2005) Global analysis of protein phosphorylation in yeast. Nature 438:679-684.
    • (2005) Nature , vol.438 , pp. 679-684
    • Ptacek, J.1
  • 3
    • 45849084634 scopus 로고    scopus 로고
    • Protein array analysis of oligomerization-induced changes in alpha-synuclein protein-protein interactions points to an interference with Cdc42 effector proteins
    • Schnack C, Danzer KM, Hengerer B, Gillardon F (2008) Protein array analysis of oligomerization-induced changes in alpha-synuclein protein-protein interactions points to an interference with Cdc42 effector proteins. Neuroscience 154:1450-1457.
    • (2008) Neuroscience , vol.154 , pp. 1450-1457
    • Schnack, C.1    Danzer, K.M.2    Hengerer, B.3    Gillardon, F.4
  • 4
    • 34249947558 scopus 로고    scopus 로고
    • Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
    • Gupta R, et al. (2007) Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast. Mol Syst Biol 3:116.
    • (2007) Mol Syst Biol , vol.3 , pp. 116
    • Gupta, R.1
  • 5
    • 0034006168 scopus 로고    scopus 로고
    • Large-scale functional analysis using peptide or protein arrays
    • Emili AQ, Cagney G (2000) Large-scale functional analysis using peptide or protein arrays. Nat Biotechnol 18:393-397.
    • (2000) Nat Biotechnol , vol.18 , pp. 393-397
    • Emili, A.Q.1    Cagney, G.2
  • 6
    • 34247563842 scopus 로고    scopus 로고
    • Braunstein I, Miniowitz 5, Moshe Y, Hershko A (2007) Inhibitory factors associated with anaphase-promoting complex/cylosome in mitotic checkpoint. Proc Natl Acad Sci USA 104:4870-4875.
    • Braunstein I, Miniowitz 5, Moshe Y, Hershko A (2007) Inhibitory factors associated with anaphase-promoting complex/cylosome in mitotic checkpoint. Proc Natl Acad Sci USA 104:4870-4875.
  • 7
    • 34247355517 scopus 로고    scopus 로고
    • Ubiquitination by the anaphase-promoting complex drives spindle checkpoint inactivation
    • Reddy SK, Rape M, Margansky WA, Kirschner MW(2007) Ubiquitination by the anaphase-promoting complex drives spindle checkpoint inactivation. Nature 446:921-925.
    • (2007) Nature , vol.446 , pp. 921-925
    • Reddy, S.K.1    Rape, M.2    Margansky, W.A.3    Kirschner, M.W.4
  • 8
    • 0030113930 scopus 로고    scopus 로고
    • Identification of a novel ubiquitin-conjugating enzyme involved in mitotic cyclin degradation
    • Yu H, King RW, Peters JM, Kirschner MW (1996) Identification of a novel ubiquitin-conjugating enzyme involved in mitotic cyclin degradation. Curr Biol 6:455-466.
    • (1996) Curr Biol , vol.6 , pp. 455-466
    • Yu, H.1    King, R.W.2    Peters, J.M.3    Kirschner, M.W.4
  • 9
    • 0041592555 scopus 로고    scopus 로고
    • On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression
    • Pan W (2003) On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression. Bio informatics 19:1333-1340.
    • (2003) Bio informatics , vol.19 , pp. 1333-1340
    • Pan, W.1
  • 10
    • 28444438861 scopus 로고    scopus 로고
    • A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
    • Xie Y, Pan W, Khodursky AB (2005) A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data. Bioinformatics 21:4280-4288.
    • (2005) Bioinformatics , vol.21 , pp. 4280-4288
    • Xie, Y.1    Pan, W.2    Khodursky, A.B.3
  • 11
    • 33845913494 scopus 로고    scopus 로고
    • Estimating p-values in small microarray experiments
    • Yang H, Churchill G (2007) Estimating p-values in small microarray experiments. Bioinformatics 23:38-43.
    • (2007) Bioinformatics , vol.23 , pp. 38-43
    • Yang, H.1    Churchill, G.2
  • 12
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100:9440-9445.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 13
    • 0242287052 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in DNA microarrays
    • Storey JD, Tibshirani R (2003) Statistical methods for identifying differentially expressed genes in DNA microarrays. Methods Mol Biol 224:149-157.
    • (2003) Methods Mol Biol , vol.224 , pp. 149-157
    • Storey, J.D.1    Tibshirani, R.2
  • 14
    • 34547589578 scopus 로고    scopus 로고
    • DAVID Bioinformatics Resources: Expanded annotation database and novel algorithms to better extract biology from large gene lists
    • Huang da W, et al. (2007) DAVID Bioinformatics Resources: Expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res 35(Web Server issue):W169-175.
    • (2007) Nucleic Acids Res 35(Web Server issue)
    • Huang da, W.1
  • 15
    • 10344247126 scopus 로고    scopus 로고
    • Autonomous regulation of the anaphase-promoting complex couples mitosis to S-phase entry
    • Rape M, Kirschner MW (2004) Autonomous regulation of the anaphase-promoting complex couples mitosis to S-phase entry. Nature 432:588-595.
    • (2004) Nature , vol.432 , pp. 588-595
    • Rape, M.1    Kirschner, M.W.2
  • 16
    • 0032524019 scopus 로고    scopus 로고
    • Exit from mitosis in Drosophila syncytial embryos requires proteolysis and cyclin degradation, and is associated with localized dephosphorylation
    • Su TT, Sprenger F, Di Gregorio PJ, Campbell SD, O'Farrell PH (1998) Exit from mitosis in Drosophila syncytial embryos requires proteolysis and cyclin degradation, and is associated with localized dephosphorylation. Genes Dev 12:1495-1503.
    • (1998) Genes Dev , vol.12 , pp. 1495-1503
    • Su, T.T.1    Sprenger, F.2    Di Gregorio, P.J.3    Campbell, S.D.4    O'Farrell, P.H.5
  • 17
    • 0020961333 scopus 로고
    • Cyclin: A protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division
    • Evans T, Rosenthal ET, Youngblom J, Distel D, Hunt T (1983) Cyclin: A protein specified by maternal mRNA in sea urchin eggs that is destroyed at each cleavage division. Cell 33:389-396.
    • (1983) Cell , vol.33 , pp. 389-396
    • Evans, T.1    Rosenthal, E.T.2    Youngblom, J.3    Distel, D.4    Hunt, T.5
  • 18
    • 0020062918 scopus 로고
    • Calmodulin and the cell cycle: Involvement in regulation of cell-cycle progression
    • Chafouleas JG, Bolton WE, Hidaka H, Boyd AE 3rd, Means AR (1982) Calmodulin and the cell cycle: involvement in regulation of cell-cycle progression. Cell 28:41-50.
    • (1982) Cell , vol.28 , pp. 41-50
    • Chafouleas, J.G.1    Bolton, W.E.2    Hidaka, H.3    Boyd 3rd, A.E.4    Means, A.R.5
  • 19
    • 0039489189 scopus 로고    scopus 로고
    • Welsh MJ, Dedman JR, Brinkley BR, Means AR (1978) Calcium-dependent regulator protein: localization in mitotic apparatus of eukaryotic cells. Proc Natl Acad Sci US'A 75:1867-1871.
    • Welsh MJ, Dedman JR, Brinkley BR, Means AR (1978) Calcium-dependent regulator protein: localization in mitotic apparatus of eukaryotic cells. Proc Natl Acad Sci US'A 75:1867-1871.
  • 20
    • 0030809387 scopus 로고    scopus 로고
    • Calmodulin localizes to the spindle pole body of Schizosaccharomyces pombe and performs an essential function in chromosome segregation
    • Moser MJ, Flory MR, Davis TN (1997) Calmodulin localizes to the spindle pole body of Schizosaccharomyces pombe and performs an essential function in chromosome segregation. J Cell Sci 110:1805-1812.
    • (1997) J Cell Sci , vol.110 , pp. 1805-1812
    • Moser, M.J.1    Flory, M.R.2    Davis, T.N.3
  • 21
    • 0021013017 scopus 로고
    • Microinjection of Ca+ +-calmodulin causes a localized depolymerization of microtubules
    • Keith C, DiPaola M, Maxfield FR, Shelanski ML (1983) Microinjection of Ca+ +-calmodulin causes a localized depolymerization of microtubules. J Cell Biol 97:1918-1924.
    • (1983) J Cell Biol , vol.97 , pp. 1918-1924
    • Keith, C.1    DiPaola, M.2    Maxfield, F.R.3    Shelanski, M.L.4
  • 22
    • 0023098015 scopus 로고
    • Effect of microinjected calcium-calmodulin on mitosis in PtK2 cells
    • Keith CH (1987) Effect of microinjected calcium-calmodulin on mitosis in PtK2 cells. Cell Motil Cytoskeleton 7:1-9.
    • (1987) Cell Motil Cytoskeleton , vol.7 , pp. 1-9
    • Keith, C.H.1
  • 23
    • 0036645394 scopus 로고    scopus 로고
    • Nercc1, a mammalian NIMA-family kinase, binds the Ran GTPase and regulates mitotic progression
    • Roig J, Mikhailov A, Belham C, Avruch J (2002) Nercc1, a mammalian NIMA-family kinase, binds the Ran GTPase and regulates mitotic progression. Genes Dev 16:1640-1658.
    • (2002) Genes Dev , vol.16 , pp. 1640-1658
    • Roig, J.1    Mikhailov, A.2    Belham, C.3    Avruch, J.4
  • 24
    • 26244453332 scopus 로고    scopus 로고
    • Active Nercc1 protein kinase concentrates at centrosomes early in mitosis and is necessary for proper spindle assembly
    • Roig J, Groen A, Caldwell J, Avruch J (2005) Active Nercc1 protein kinase concentrates at centrosomes early in mitosis and is necessary for proper spindle assembly. Mol Biol Cell 16:4827-4840.
    • (2005) Mol Biol Cell , vol.16 , pp. 4827-4840
    • Roig, J.1    Groen, A.2    Caldwell, J.3    Avruch, J.4
  • 25
    • 36749055738 scopus 로고    scopus 로고
    • Cyclin G2 is a centrosome-associated nucleocytoplasmic shuttling protein that influences microtubule stability and induces a p53-dependent cell cycle arrest
    • Arachchige Don AS, et al. (2006) Cyclin G2 is a centrosome-associated nucleocytoplasmic shuttling protein that influences microtubule stability and induces a p53-dependent cell cycle arrest. Exp Ceil Res 312:4181-4204.
    • (2006) Exp Ceil Res , vol.312 , pp. 4181-4204
    • Arachchige Don, A.S.1
  • 26
    • 42449093294 scopus 로고    scopus 로고
    • DDA3 recruits microtubule depolymerase Kif2a to spindle poles and controls spindle dynamics and mitotic chromosome movement
    • Jang CY, et al. (2008) DDA3 recruits microtubule depolymerase Kif2a to spindle poles and controls spindle dynamics and mitotic chromosome movement. J Cell Biol 181:255-267.
    • (2008) J Cell Biol , vol.181 , pp. 255-267
    • Jang, C.Y.1
  • 27
    • 0345593387 scopus 로고    scopus 로고
    • Dynamic association of proteasomal machinery with the centrosome
    • Wigley WC, et al. (1999) Dynamic association of proteasomal machinery with the centrosome. J Cell Biol 145:481-490.
    • (1999) J Cell Biol , vol.145 , pp. 481-490
    • Wigley, W.C.1
  • 28
    • 0037009056 scopus 로고    scopus 로고
    • Rapid microtubule-independent dynamics of Cdc20 at kinetochores and centrosomes in mammalian cells
    • Kallio MJ, Beardmore VA, Weinstein J, Gorbsky GJ (2002) Rapid microtubule-independent dynamics of Cdc20 at kinetochores and centrosomes in mammalian cells. J Cell Biol 158:841-847.
    • (2002) J Cell Biol , vol.158 , pp. 841-847
    • Kallio, M.J.1    Beardmore, V.A.2    Weinstein, J.3    Gorbsky, G.J.4
  • 29
    • 0037166933 scopus 로고    scopus 로고
    • The roles of Fzy/Cdc20 and Fzr/Cdh1 in regulating the destruction of cyclin B in space and time
    • Raff JW, Jeffers K, Huang JY (2002) The roles of Fzy/Cdc20 and Fzr/Cdh1 in regulating the destruction of cyclin B in space and time. J Cell Biol 157:1139-1149.
    • (2002) J Cell Biol , vol.157 , pp. 1139-1149
    • Raff, J.W.1    Jeffers, K.2    Huang, J.Y.3
  • 30
    • 0033561311 scopus 로고    scopus 로고
    • The disappearance of cyclin B at the end of mitosis is regulated spatially in Drosophila cells
    • Huang J, Raff JW (1999) The disappearance of cyclin B at the end of mitosis is regulated spatially in Drosophila cells. EMBO J 18:2184-2195.
    • (1999) EMBO J , vol.18 , pp. 2184-2195
    • Huang, J.1    Raff, J.W.2
  • 31
    • 13144294031 scopus 로고    scopus 로고
    • Dynamics in the p53-Mdm2 ubiquitination pathway
    • Brooks CL, Gu W (2004) Dynamics in the p53-Mdm2 ubiquitination pathway. Cell Cycle 3:895-899.
    • (2004) Cell Cycle , vol.3 , pp. 895-899
    • Brooks, C.L.1    Gu, W.2
  • 33
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 34
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for Annotation, Visualization, and Integrated Discovery
    • Dennis G, Jr, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4:P3.
    • (2003) Genome Biol , vol.4
    • Dennis Jr, G.1


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