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Volumn 20, Issue 4, 2009, Pages 689-696

Sodium Controlled Selective Reactivity of Protonated Deoxy-Oligonucleotides in the Gas Phase

Author keywords

[No Author keywords available]

Indexed keywords

ACIDIC PROTONS; GAS-PHASE; HEXAMER; MATRIX-ASSISTED LASER-DESORPTION/IONIZATION; METASTABLE FRAGMENTATIONS; PHOSPHODIESTER GROUPS; POSITIVELY CHARGED; PROTON AFFINITIES; PROTONATED; REACTION CHANNELS; SELECTIVE REACTIVITIES; SINGLE MECHANISMS; SODIUM IONS; SUGAR UNITS; TETRAMER;

EID: 62149144090     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2008.12.010     Document Type: Article
Times cited : (5)

References (36)
  • 1
    • 0033918391 scopus 로고    scopus 로고
    • Mass Spectrometry: A Tool for the Identification of Proteins Separated by Gels
    • Lahm H.W., and Langen H. Mass Spectrometry: A Tool for the Identification of Proteins Separated by Gels. Electrophoresis 21 (2000) 2105-2114
    • (2000) Electrophoresis , vol.21 , pp. 2105-2114
    • Lahm, H.W.1    Langen, H.2
  • 2
    • 0034096536 scopus 로고    scopus 로고
    • Protein identification methods in proteomics
    • Gevaert K., and Vandekerckhove J. Protein identification methods in proteomics. Electrophoresis 21 (2000) 1145-1154
    • (2000) Electrophoresis , vol.21 , pp. 1145-1154
    • Gevaert, K.1    Vandekerckhove, J.2
  • 3
    • 18444388599 scopus 로고    scopus 로고
    • Advances in the Analysis of Proteins and Peptides by Capillary Electrophoresis with Matrix-Assisted Laser Desorption/Ionization and Electrospray-Mass Spectrometry Detection
    • Stutz H. Advances in the Analysis of Proteins and Peptides by Capillary Electrophoresis with Matrix-Assisted Laser Desorption/Ionization and Electrospray-Mass Spectrometry Detection. Electrophoresis 26 (2005) 1254-1290
    • (2005) Electrophoresis , vol.26 , pp. 1254-1290
    • Stutz, H.1
  • 6
    • 5344270491 scopus 로고    scopus 로고
    • Gas-Phase Fragmentation of Oligonucleotide Ions
    • Wu J., and McLuckey S.A. Gas-Phase Fragmentation of Oligonucleotide Ions. Int. J. Mass Spectrom. 237 (2004) 197-241
    • (2004) Int. J. Mass Spectrom. , vol.237 , pp. 197-241
    • Wu, J.1    McLuckey, S.A.2
  • 7
    • 12344283378 scopus 로고    scopus 로고
    • Factors Influencing Oligonucleotide Stability in Matrix-Assisted Laser Desorption/Ionization (MALDI) Mass Spectroscopy
    • Tang W., Krause J., Zhu L., and Smith L.M. Factors Influencing Oligonucleotide Stability in Matrix-Assisted Laser Desorption/Ionization (MALDI) Mass Spectroscopy. Int. J. Mass Spectrom. 169 (1997) 301-311
    • (1997) Int. J. Mass Spectrom. , vol.169 , pp. 301-311
    • Tang, W.1    Krause, J.2    Zhu, L.3    Smith, L.M.4
  • 8
    • 0027685978 scopus 로고
    • Matrix-Assisted laser-desorption ionization of oligonucleotides with various matrices
    • Tang K., Allman S.L., and Chen C.H. Matrix-Assisted laser-desorption ionization of oligonucleotides with various matrices. Rapid Commun. Mass Spectrom. 7 (1993) 943-948
    • (1993) Rapid Commun. Mass Spectrom. , vol.7 , pp. 943-948
    • Tang, K.1    Allman, S.L.2    Chen, C.H.3
  • 9
    • 0035564363 scopus 로고    scopus 로고
    • Metastable Decay of Negatively Charged Oligodeoxynucleotides Analyzed with Ultraviolet Matrix-Assisted Laser Desorption/Ionization Post-Source Decay and Deuterium Exchange
    • Gross J., Hillenkamp F., Wan K.X., and Gross M.L. Metastable Decay of Negatively Charged Oligodeoxynucleotides Analyzed with Ultraviolet Matrix-Assisted Laser Desorption/Ionization Post-Source Decay and Deuterium Exchange. J. Am. Soc. Mass Spectrom. 12 (2001) 180-192
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 180-192
    • Gross, J.1    Hillenkamp, F.2    Wan, K.X.3    Gross, M.L.4
  • 10
    • 0028836940 scopus 로고
    • Direct Mass-Spectrometric Sequencing of Low-Picomole Amounts of Oligodeoxynucleotides with Up to 21 Bases by Matrix-Assisted Laser-Desorption Ionization Mass-Spectrometry
    • Nordhoff E., Karas M., Cramer R., Hahner S., Hillenkamp F., Kirpekar F., Lezius A., Muth J., Meier C., and Engels J.W. Direct Mass-Spectrometric Sequencing of Low-Picomole Amounts of Oligodeoxynucleotides with Up to 21 Bases by Matrix-Assisted Laser-Desorption Ionization Mass-Spectrometry. J. Mass Spectrom. 30 (1995) 99-112
    • (1995) J. Mass Spectrom. , vol.30 , pp. 99-112
    • Nordhoff, E.1    Karas, M.2    Cramer, R.3    Hahner, S.4    Hillenkamp, F.5    Kirpekar, F.6    Lezius, A.7    Muth, J.8    Meier, C.9    Engels, J.W.10
  • 11
    • 84989078670 scopus 로고
    • Matrix-Assisted Laser-Desorption Mass-Spectrometry of Homopolymer Oligodeoxyribonucleotides Influence of Base Composition on the Mass-Spectrometric Response
    • Schneider K., and Chait B.T. Matrix-Assisted Laser-Desorption Mass-Spectrometry of Homopolymer Oligodeoxyribonucleotides Influence of Base Composition on the Mass-Spectrometric Response. Org. Mass Spectrom. 28 (1993) 1353-1361
    • (1993) Org. Mass Spectrom. , vol.28 , pp. 1353-1361
    • Schneider, K.1    Chait, B.T.2
  • 12
    • 33845320169 scopus 로고    scopus 로고
    • Effective Quenching of Fragment Formation in Negative Ion Oligonucleotide Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Through Sodium Adduct Formation
    • Stano M., Flosadottir H.D., and Ingolfsson O. Effective Quenching of Fragment Formation in Negative Ion Oligonucleotide Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Through Sodium Adduct Formation. Rapid Commun. Mass Spectrom. 20 (2006) 3498-3502
    • (2006) Rapid Commun. Mass Spectrom. , vol.20 , pp. 3498-3502
    • Stano, M.1    Flosadottir, H.D.2    Ingolfsson, O.3
  • 13
    • 0035567094 scopus 로고    scopus 로고
    • Fragmentation Mechanisms of Oligodeoxynucleotides: Effects of Replacing Phosphates with Methylphosphonates and Thymines with Other Bases in T-Rich Sequences
    • Wan K.X., and Gross M.L. Fragmentation Mechanisms of Oligodeoxynucleotides: Effects of Replacing Phosphates with Methylphosphonates and Thymines with Other Bases in T-Rich Sequences. J. Am. Soc. Mass Spectrom. 12 (2001) 580-589
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 580-589
    • Wan, K.X.1    Gross, M.L.2
  • 14
    • 0032232683 scopus 로고    scopus 로고
    • Investigations of the Metastable Decay of DNA Under Ultraviolet Matrix-Assisted Laser Desorption/Ionization Conditions with Post-Source-Decay Analysis and Hydrogen/Deuterium Exchange
    • Gross J., Leisner A., Hillenkamp F., Hahner S., Karas M., Schafer J., Lutzenkirchen F., and Nordhoff E. Investigations of the Metastable Decay of DNA Under Ultraviolet Matrix-Assisted Laser Desorption/Ionization Conditions with Post-Source-Decay Analysis and Hydrogen/Deuterium Exchange. J. Am. Soc. Mass Spectrom. 9 (1998) 866-878
    • (1998) J. Am. Soc. Mass Spectrom. , vol.9 , pp. 866-878
    • Gross, J.1    Leisner, A.2    Hillenkamp, F.3    Hahner, S.4    Karas, M.5    Schafer, J.6    Lutzenkirchen, F.7    Nordhoff, E.8
  • 15
    • 33749248364 scopus 로고
    • Low-Energy Collision-Induced Dissociation of Deprotonated Dinucleotides-Determination of the Energetically Favored Dissociation Pathways and the Relative Acidities of the Nucleic-Acid Bases
    • Rodgers M.T., Campbell S., Marzluff E.M., and Beauchamp J.L. Low-Energy Collision-Induced Dissociation of Deprotonated Dinucleotides-Determination of the Energetically Favored Dissociation Pathways and the Relative Acidities of the Nucleic-Acid Bases. Int. J. Mass Spectrom. Ion Processes 137 (1994) 121-149
    • (1994) Int. J. Mass Spectrom. Ion Processes , vol.137 , pp. 121-149
    • Rodgers, M.T.1    Campbell, S.2    Marzluff, E.M.3    Beauchamp, J.L.4
  • 16
    • 0032860213 scopus 로고    scopus 로고
    • Analysis of Negatively "charge tagged" DNA by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
    • Berlin K., and Gut I.G. Analysis of Negatively "charge tagged" DNA by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. Rapid Commun. Mass Spectrom. 13 (1999) 1739-1743
    • (1999) Rapid Commun. Mass Spectrom. , vol.13 , pp. 1739-1743
    • Berlin, K.1    Gut, I.G.2
  • 17
    • 0036731452 scopus 로고    scopus 로고
    • A Study of Fast and Metastable Dissociations of Adenine-Thymine Binary-Base Oligonucleotides by Using Positive-Ion MALDI-TOF Mass Spectrometry
    • Chan T.W.D., Fung Y.M.E., and Li Y.C.L. A Study of Fast and Metastable Dissociations of Adenine-Thymine Binary-Base Oligonucleotides by Using Positive-Ion MALDI-TOF Mass Spectrometry. J. Am. Soc. Mass Spectrom. 13 (2002) 1052-1064
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , pp. 1052-1064
    • Chan, T.W.D.1    Fung, Y.M.E.2    Li, Y.C.L.3
  • 18
    • 0036884738 scopus 로고    scopus 로고
    • Fragmentation Pathway Studies of Oligonucleotides in Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry by Charge Tagging and H/D Exchange
    • Chou C.W., Limbach P.A., and Cole R.B. Fragmentation Pathway Studies of Oligonucleotides in Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry by Charge Tagging and H/D Exchange. J. Am. Soc. Mass Spectrom. 13 (2002) 1407-1417
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , pp. 1407-1417
    • Chou, C.W.1    Limbach, P.A.2    Cole, R.B.3
  • 19
    • 0035561176 scopus 로고    scopus 로고
    • Elucidation of the Initial Step of Oligonucleotide Fragmentation in Matrix-Assisted Laser Desorption/Ionization Using Modified Nucleic Acids
    • Christian N.P., Reilly J.P., Mokler V.R., Wincott F.E., and Ellington A.D. Elucidation of the Initial Step of Oligonucleotide Fragmentation in Matrix-Assisted Laser Desorption/Ionization Using Modified Nucleic Acids. J. Am. Soc. Mass Spectrom. 12 (2001) 744-753
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 744-753
    • Christian, N.P.1    Reilly, J.P.2    Mokler, V.R.3    Wincott, F.E.4    Ellington, A.D.5
  • 20
    • 0033379561 scopus 로고    scopus 로고
    • Do Charge-Remote Fragmentations Occur Under Matrix-Assisted Laser Desorption Ionization Post-Source Decompositions and Matrix-Assisted Laser Desorption Ionization Collisionally Activated Decompositions?
    • Domingues M.R.M., Marques M., Vale C.A.M., Neves M.G., Cavaleiro J.A.S., Ferrer-Correia A.J., Nemirovskiy O.V., and Gross M.L. Do Charge-Remote Fragmentations Occur Under Matrix-Assisted Laser Desorption Ionization Post-Source Decompositions and Matrix-Assisted Laser Desorption Ionization Collisionally Activated Decompositions?. J. Am. Soc. Mass Spectrom. 10 (1999) 217-223
    • (1999) J. Am. Soc. Mass Spectrom. , vol.10 , pp. 217-223
    • Domingues, M.R.M.1    Marques, M.2    Vale, C.A.M.3    Neves, M.G.4    Cavaleiro, J.A.S.5    Ferrer-Correia, A.J.6    Nemirovskiy, O.V.7    Gross, M.L.8
  • 21
    • 0141886133 scopus 로고    scopus 로고
    • Production and Fragmentation of Multiply Charged Ions in "Electron-free" Matrix-Assisted Laser Desorption/Ionization
    • Frankevich V., Zhang J., Dashtiev M., and Zenobi R. Production and Fragmentation of Multiply Charged Ions in "Electron-free" Matrix-Assisted Laser Desorption/Ionization. Rapid Commun. Mass Spectrom. 17 (2003) 2343-2348
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 2343-2348
    • Frankevich, V.1    Zhang, J.2    Dashtiev, M.3    Zenobi, R.4
  • 22
    • 0035154953 scopus 로고    scopus 로고
    • RNA Fragmentation Studied in a Matrix-Assisted Laser Desorption/Ionization Tandem Quadrupole/Orthogonal Time-of-Flight Mass Spectrometer
    • Kirpekar F., and Krogh T.N. RNA Fragmentation Studied in a Matrix-Assisted Laser Desorption/Ionization Tandem Quadrupole/Orthogonal Time-of-Flight Mass Spectrometer. Rapid Commun. Mass Spectrom. 15 (2001) 8-14
    • (2001) Rapid Commun. Mass Spectrom. , vol.15 , pp. 8-14
    • Kirpekar, F.1    Krogh, T.N.2
  • 23
    • 0031081531 scopus 로고    scopus 로고
    • Controlling DNA Fragmentation in MALDI-MS by Chemical Modification
    • Tang W., Zhu L., and Smith L.M. Controlling DNA Fragmentation in MALDI-MS by Chemical Modification. Anal. Chem. 69 (1997) 302-312
    • (1997) Anal. Chem. , vol.69 , pp. 302-312
    • Tang, W.1    Zhu, L.2    Smith, L.M.3
  • 24
    • 0029073182 scopus 로고
    • Increased Stability of Nucleic-Acids Containing 7-Deaza-Guanosine and 7-Deaza-Adenosine May Enable Rapid DNA-Sequencing by Matrix-Assisted Laser-Desorption Mass-Spectrometry
    • Schneider K., and Chait B.T. Increased Stability of Nucleic-Acids Containing 7-Deaza-Guanosine and 7-Deaza-Adenosine May Enable Rapid DNA-Sequencing by Matrix-Assisted Laser-Desorption Mass-Spectrometry. Nucleic Acids Res. 23 (1995) 1570-1575
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1570-1575
    • Schneider, K.1    Chait, B.T.2
  • 25
    • 0029638418 scopus 로고
    • Oligodeoxynucleotide Fragmentation in MALDI/TOF Mass-Spectrometry Using 355-nm Radiation
    • Zhu L., Parr G.R., Fitzgerald M.C., Nelson C.M., and Smith L.M. Oligodeoxynucleotide Fragmentation in MALDI/TOF Mass-Spectrometry Using 355-nm Radiation. J. Am. Chem. Soc. 117 (1995) 6048-6056
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 6048-6056
    • Zhu, L.1    Parr, G.R.2    Fitzgerald, M.C.3    Nelson, C.M.4    Smith, L.M.5
  • 26
    • 0029163938 scopus 로고
    • 7-Deaza Purine-Bases Offer a Higher Ion Stability in the Analysis of DNA by Matrix-Assisted Laser-Desorption Ionization Mass Spectrometry
    • Kirpekar F., Nordhoff E., Kristiansen K., Roepstorff P., Hahner S., and Hillenkamp F. 7-Deaza Purine-Bases Offer a Higher Ion Stability in the Analysis of DNA by Matrix-Assisted Laser-Desorption Ionization Mass Spectrometry. Rapid Commun. Mass Spectrom. 9 (1995) 525-531
    • (1995) Rapid Commun. Mass Spectrom. , vol.9 , pp. 525-531
    • Kirpekar, F.1    Nordhoff, E.2    Kristiansen, K.3    Roepstorff, P.4    Hahner, S.5    Hillenkamp, F.6
  • 27
    • 0038796478 scopus 로고    scopus 로고
    • MS/MS Study of Deoxydinucleotides Bound with Alkali-Metal Ions Using ESI-MS
    • Abliz Z., Takayama M., Xiang Y., and Li J.L. MS/MS Study of Deoxydinucleotides Bound with Alkali-Metal Ions Using ESI-MS. Chin. Chem. Lett. 14 (2003) 499-502
    • (2003) Chin. Chem. Lett. , vol.14 , pp. 499-502
    • Abliz, Z.1    Takayama, M.2    Xiang, Y.3    Li, J.L.4
  • 28
    • 11844257550 scopus 로고    scopus 로고
    • Charge State-Dependent Fragmentation of Oligonucleotide/Metal Complexes
    • Keller K.M., and Brodbelt J.S. Charge State-Dependent Fragmentation of Oligonucleotide/Metal Complexes. J. Am. Soc. Mass Spectrom. 16 (2005) 28-37
    • (2005) J. Am. Soc. Mass Spectrom. , vol.16 , pp. 28-37
    • Keller, K.M.1    Brodbelt, J.S.2
  • 29
    • 44049123270 scopus 로고
    • Tandem Mass-Spectrometry of Small, Multiply Charged Oligonucleotides
    • McLuckey S.A., Vanberkel G.J., and Glish G.L. Tandem Mass-Spectrometry of Small, Multiply Charged Oligonucleotides. J. Am. Soc. Mass Spectrom. 3 (1992) 60-70
    • (1992) J. Am. Soc. Mass Spectrom. , vol.3 , pp. 60-70
    • McLuckey, S.A.1    Vanberkel, G.J.2    Glish, G.L.3
  • 30
    • 0029931505 scopus 로고    scopus 로고
    • Specific Metal-Oligonucleotide Binding Studied by High Resolution Tandem Mass Spectrometry
    • Wu Q.Y., Cheng X.H., Hofstadler S.A., and Smith R.D. Specific Metal-Oligonucleotide Binding Studied by High Resolution Tandem Mass Spectrometry. J. Mass Spectrom. 31 (1996) 669-675
    • (1996) J. Mass Spectrom. , vol.31 , pp. 669-675
    • Wu, Q.Y.1    Cheng, X.H.2    Hofstadler, S.A.3    Smith, R.D.4
  • 31
    • 0030464692 scopus 로고    scopus 로고
    • Effects of Matrix Variations and the Presence of Iron on Matrix-Assisted Laser Desorption/Ionization Mass Spectra of DNA
    • Christian N.P., Giver L., Ellington A.D., and Reilly J.P. Effects of Matrix Variations and the Presence of Iron on Matrix-Assisted Laser Desorption/Ionization Mass Spectra of DNA. Rapid Commun. Mass Spectrom. 10 (1996) 1980-1986
    • (1996) Rapid Commun. Mass Spectrom. , vol.10 , pp. 1980-1986
    • Christian, N.P.1    Giver, L.2    Ellington, A.D.3    Reilly, J.P.4
  • 32
    • 0033473735 scopus 로고    scopus 로고
    • Formation and Characterization of Iron-Oligonucleotide Complexes with Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
    • Hettich R.L. Formation and Characterization of Iron-Oligonucleotide Complexes with Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. J. Am. Soc. Mass Spectrom. 10 (1999) 941-949
    • (1999) J. Am. Soc. Mass Spectrom. , vol.10 , pp. 941-949
    • Hettich, R.L.1
  • 33
    • 0000790292 scopus 로고    scopus 로고
    • Location of the Na+ Cation in Negative Ions of DNA Evidenced by Using MS2 Experiments in Ion Trap Mass Spectrometry
    • Favre A., Gonnet F., and Tabet J.C. Location of the Na+ Cation in Negative Ions of DNA Evidenced by Using MS2 Experiments in Ion Trap Mass Spectrometry. Int. J. Mass Spectrom. 191 (1999) 303-312
    • (1999) Int. J. Mass Spectrom. , vol.191 , pp. 303-312
    • Favre, A.1    Gonnet, F.2    Tabet, J.C.3
  • 34
    • 0035563747 scopus 로고    scopus 로고
    • Fragmentation of Electrospray-Produced Oligodeoxynucleotide Ions Adducted to Metal Ions
    • Wang Y.S., Taylor J.S., and Gross M.L. Fragmentation of Electrospray-Produced Oligodeoxynucleotide Ions Adducted to Metal Ions. J. Am. Soc. Mass Spectrom. 12 (2001) 550-556
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 550-556
    • Wang, Y.S.1    Taylor, J.S.2    Gross, M.L.3
  • 35
    • 0035563875 scopus 로고    scopus 로고
    • Fragmentation of Photomodified Oligodeoxynucleotides Adducted with Metal Ions in an Electrospray-Ionization Ion-Trap Mass Spectrometer
    • Wang Y.S., Taylor J.S., and Gross M.L. Fragmentation of Photomodified Oligodeoxynucleotides Adducted with Metal Ions in an Electrospray-Ionization Ion-Trap Mass Spectrometer. J. Am. Soc. Mass Spectrom. 12 (2001) 1174-1179
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 1174-1179
    • Wang, Y.S.1    Taylor, J.S.2    Gross, M.L.3
  • 36
    • 0032366914 scopus 로고    scopus 로고
    • Evaluated Gas Phase Basicities and Proton Affinities of Molecules: An Update
    • Hunter E.P.L., and Lias S.G. Evaluated Gas Phase Basicities and Proton Affinities of Molecules: An Update. J. Phys. Chem. Ref. Data 27 (1998) 413-656
    • (1998) J. Phys. Chem. Ref. Data , vol.27 , pp. 413-656
    • Hunter, E.P.L.1    Lias, S.G.2


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