DNA phosphorothioation in Streptomyces lividans: Mutational analysis of the dnd locus

BMC Microbiology

Volumn 9, Issue , 2009, Pages

  Xu, Tiegang ^a   Liang, Jingdan ^a   Chen, Shi ^a   Wang, Lianrong ^a   He, Xinyi ^a   You, Delin ^a   Wang, Zhijun ^a   Li, Aiying ^a   Xu, Zhongli ^a   Zhou, Xiufen ^a   Deng, Zixin ^a  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIAL GENE; GENE DELETION; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; METABOLISM; MICROBIAL VIABILITY; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PHENOTYPE; PHOSPHORYLATION; STREPTOMYCES LIVIDANS;

DNA MUTATIONAL ANALYSIS; DNA, BACTERIAL; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; GENETIC COMPLEMENTATION TEST; MICROBIAL VIABILITY; MULTIGENE FAMILY; OPEN READING FRAMES; OPERON; PHENOTYPE; PHOSPHORYLATION; STREPTOMYCES LIVIDANS;

EID: 62149086600     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-41     Document Type: Article

References (25)

1. Unusual modification of bacteriophage Mu DNA. S Hattman, J Virol 1979 32 2 468 475 159363
2. Specificity of the bacteriophage Mu mom+ -controlled DNA modification. S Hattman, J Virol 1980 34 1 277 279 6445426
3. Purification and characterization of the unusual deoxynucleoside, alpha-N-(9-beta-D-2'-deoxyribofuranosylpurin-6-yl)glycinamide, specified by the phage Mu modification function. D Swinton S Hattman PF Crain CS Cheng DL Smith JA McCloskey, Proc Natl Acad Sci USA 1983 80 24 7400 7404 6369315 10.1073/pnas.80.24.7400
4. Epigenetic gene regulation in the bacterial world. J Casadesus D Low, Microbiol Mol Biol Rev 2006 70 3 830 856 16959970 10.1128/MMBR.00016-06
5. A novel DNA modification by sulphur. XF Zhou XY He JD Liang AY Li TG Xu T Kieser JD Helmann ZX Deng, Mol Microbiol 2005 57 5 1428 1438 10.1111/j.1365-2958.2005.04764.x 16102010
6. Phosphorothioation of DNA in bacteria by dnd genes. L Wang S Chen T Xu K Taghizadeh JS Wishnok X Zhou D You Z Deng PC Dedon, Nat Chem Biol 2007 3 11 709 710 10.1038/nchembio.2007.39 17934475
7. Phosphorothioation of DNA in bacteria. F Eckstein, Nat Chem Biol 2007 3 11 689 690 10.1038/nchembio1107-689 17948013
8. DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites. J Liang Z Wang X He J Li X Zhou Z Deng, Nucleic Acids Res 2007 35 9 2944 2954 17439960 10.1093/nar/gkm176
9. Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron. X Zhou Z Deng JL Firmin DA Hopwood T Kieser, Nucleic Acids Res 1988 16 10 4341 4352 2837731 10.1093/nar/16.10.4341
10. Novel post-replicative DNA modification in Streptomyces: analysis of the preferred modification site of plasmid pIJ101. P Dyson M Evans, Nucleic Acids Res 1998 26 5 1248 1253 9469833 10.1093/nar/26.5.1248
11. Novel site-specific DNA modification in Streptomyces: analysis of preferred intragenic modification sites present in a 5.7 kb amplified DNA sequence. A Boybek TD Ray MC Evans PJ Dyson, Nucleic Acids Res 1998 26 14 3364 3371 9649620 10.1093/nar/26.14.3364
12. A combined genetic and physical map of the Streptomyces coelicolor A3(2) chromosome. HM Kieser T Kieser DA Hopwood, J Bacteriol 1992 174 17 5496 5507 1512187
13. Streptomyces lividans 66 contains a gene for phage resistance which is similar to the phage lambda ea59 endonuclease gene. X Zhou Z Deng DA Hopwood T Kieser, Mol Microbiol 1994 12 5 789 797 10.1111/j.1365-2958.1994.tb01065.x 8052130
14. Tris-dependent oxidative DNA strand scission during electrophoresis. T Ray A Mills P Dyson, Electrophoresis 1995 16 6 888 894 10.1002/elps.11501601149 7498131
15. Tris-dependent site-specific cleavage of DNA. T Ray J Weaden P Dyson, FEMS Microbiol Lett 1992 75 2-3 247 252 1398041 10.1111/j.1574-6968.1992. tb05425.x
16. Analysis of a genomic island housing genes for DNA S-modification system in Streptomyces lividans 66 and its counterparts in other distantly related bacteria. X He HY Ou Q Yu X Zhou J Wu J Liang W Zhang K Rajakumar Z Deng, Mol Microbiol 2007 65 4 1034 1048 10.1111/j.1365-2958.2007.05846.x 17640271
17. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. M Bierman R Logan K O'Brien ET Seno RN Rao BE Schoner, Gene 1992 116 1 43 49 10.1016/0378-1119(92)90627-2 1628843
18. Construction of Escherichia coli-Streptomyces shuttle expression vectors for gene expression in Streptomyces. R Yang Z Hu Z Deng J Li, Chin J Biotechnol 1998 14 1 1 8 9759539
19. Construction of thiostrepton-inducible, high-copy-number expression vectors for usein Streptomyces spp. E Takano J White CJ Thompson MJ Bibb, Gene 1995 166 1 133 137 10.1016/0378-1119(95)00545-2 8529877
20. Molecular Genetic Analysis of an Unusual DNA Modification in Streptomyces lividans. A Li, Ph.D thesis Huazhong Agricultural University 2000
21. Trafficking in persulfides: delivering sulfur in biosynthetic pathways. EG Mueller, Nat Chem Biol 2006 2 4 185 194 10.1038/nchembio779 16547481
22. A novel DNA modification by sulfur: DndA is a NifS-like cysteine desulfurase capable of assembling DndC as an iron-sulfur cluster protein in Streptomyces lividans. D You L Wang F Yao X Zhou Z Deng, Biochemistry 2007 46 20 6126 6133 10.1021/bi602615k 17469805
23. Molecular cloning : a laboratory manual. J Sambrook DW Russell, Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press 3 2001
24. Practical Streptomyces Genetics. T Kieser JM Bibb MJ Buttner KF Chater DA Hopwood, Norwich: John Innes Foundation 2000
25. Analysis of Streptomyces avermitilis genes required for avermectin biosynthesis utilizing a novel integration vector. DJ MacNeil KM Gewain CL Ruby G Dezeny PH Gibbons T MacNeil, Gene 1992 111 1 61 68 10.1016/0378-1119(92)90603- M 1547955