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Volumn , Issue , 2009, Pages 138-149

An exact solver for the DCJ median problem

Author keywords

[No Author keywords available]

Indexed keywords

EXTENSIVE SIMULATIONS; GENOME REARRANGEMENTS; MEDIAN PROBLEM; REAL DATA SETS; SIGNED PERMUTATIONS; TEST CASE;

EID: 61949276435     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (22)

References (13)
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    • Adam, Z.1    Sankoff, D.2
  • 3
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    • On the practical solution of the reversal median problem
    • Algorithms in Bioinformatics
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  • 4
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    • Use of chloroplast DNA rearrangements in reconstructing plant phylogeny
    • In P. Soltis, D. Soltis, and J.J. Doyle, editors, Chapman and Hall
    • S.R. Downie and J. D. Palmer. Use of chloroplast DNA rearrangements in reconstructing plant phylogeny. In P. Soltis, D. Soltis, and J.J. Doyle, editors, Plant Molecular Systematics, pages 14-35. Chapman and Hall, 1992.
    • (1992) Plant Molecular Systematics , pp. 14-35
    • Downie, S.R.1    Palmer, J.D.2
  • 6
    • 84957042462 scopus 로고    scopus 로고
    • Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data
    • In, volume of Lecture Notes in Computer Science
    • B.M.E. Moret, A.C. Siepel, J. Tang, and T. Liu. Inversion medians outperform breakpoint medians in phylogeny reconstruction from gene-order data. In Proc. 2nd Int'l Workshop Algs. in Bioinformatics (WABI'02), volume 2452 of Lecture Notes in Computer Science, pages 521-536, 2002.
    • (2002) Proc. 2nd Int'l Workshop Algs. in Bioinformatics (WABI'02) , vol.2452 , pp. 521-536
    • Moret, B.M.E.1    Siepel, A.C.2    Tang, J.3    Liu, T.4
  • 7
    • 84947708594 scopus 로고    scopus 로고
    • The median problem for breakpoints in comparative genomics
    • In, volume of Lecture Notes in Computer Science, Springer Verlag, Berlin
    • D. Sankoff and M. Blanchette. The median problem for breakpoints in comparative genomics. In Proc. 3rd Int 'l Conf. Computing and Combinatorics (COCOON'97), volume 1276 of Lecture Notes in Computer Science, pages 251-264. Springer Verlag, Berlin, 1997.
    • (1997) Proc. 3rd Int 'L Conf. Computing and Combinatorics (COCOON'97) , vol.1276 , pp. 251-264
    • Sankoff, D.1    Blanchette, M.2
  • 8
    • 84959066123 scopus 로고    scopus 로고
    • Finding an optimal inversion median: Experimental results
    • Algorithms in Bioinformatics
    • A.C. Siepel and B.M.E. Moret. Finding an optimal inversion median: Experimental results. In Proc. 1st Int'l Workshop Algs. in Bioinformatics (WABI'01), volume 2149 of Lecture Notes in Computer Science, pages 189-203. Springer Verlag, Berlin, 2001. (Pubitemid 33322582)
    • (2001) Lecture Notes in Computer Science , Issue.2149 , pp. 189-203
    • Siepel, A.C.1    Moret, B.M.E.2
  • 9
    • 56649103607 scopus 로고    scopus 로고
    • Multichromosomal genome median and halving problems
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    • E. Thnnier, C. Zheng, and D. Sankoff. Multichromosomal genome median and halving problems. In Proc. 8th Int'l Workshop Algs. in Bioinformatics (WA BI'08), volume 5251 of Lecture Notes in Computer Science, pages 1-13, 2008.
    • (2008) Proc. 8th Int'l Workshop Algs. in Bioinformatics (WA BI'08) , vol.5251 , pp. 1-13
    • Thnnier, E.1    Zheng, C.2    Sankoff, D.3
  • 10
    • 0038658640 scopus 로고    scopus 로고
    • Efficient algorithms for multichromosomal genome rearrangements
    • G. Tesler. Efficient algorithms for multichromosomal genome rearrangements. J. Comput. Syst. Sci., 63(5):587-609, 2002.
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  • 11
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    • Decompositions of multiple breakpoint graphs and rapid exact solutions to the median problem
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    • W. Xu and D. Sankoff. Decompositions of multiple breakpoint graphs and rapid exact solutions to the median problem. In Proc. 8th Int'l Workshop Algs. in Bioinformatics (WABI'08), volume 5251 of Lecture Notes in Computer Science, pages 25-37, 2008.
    • (2008) Proc. 8th Int'l Workshop Algs. in Bioinformatics (WABI'08) , vol.5251 , pp. 25-37
    • Xu, W.1    Sankoff, D.2
  • 12
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    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • DOI 10.1093/bioinformatics/bti535
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    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3
  • 13
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    • A branch-and-bound method for the multichromosomal reversal median problem
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    • M. Zhang, W. Arndt, and J. Tang. A branch-and-bound method for the multichromosomal reversal median problem. In Proc. 8th Int 'l Workshop Algs. in Bioinformatics (WABI'08), volume 5251 of Lecture Notes in Computer SCience, pages 14-24, 2008.
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    • Zhang, M.1    Arndt, W.2    Tang, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.