Inferring disease-related pathways using a probabilistic epistasis model

Pacific Symposium on Biocomputing 2009, PSB 2009

Volumn , Issue , 2009, Pages 480-491

  Kanabar, P N ^a   Vaske, C J ^a   Yeang, C H ^b   Yildiz, F H ^c   Stuart, J M ^a  

^a University of California Santa Cruz   (United States)

^b INSTITUTE FOR ADVANCED STUDY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOFILM FORMATION; EXPRESSION PROFILE; HUMAN PATHOGENS; INFERRED NETWORKS; KNOCK OUTS; MODEL INFERENCE; PROBABILISTIC MODELS; REGULATORY NETWORK; VIBRIO CHOLERAE;

BIOFILMS;

GENE EXPRESSION;

ARTICLE; BACTERIAL GENE; BIOFILM; BIOLOGICAL MODEL; BIOMETRY; GENE REGULATORY NETWORK; GENETIC EPISTASIS; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; PATHOGENICITY; PHENOTYPE; PHYSIOLOGY; STATISTICAL MODEL; VIBRIO CHOLERAE;

BIOFILMS; BIOMETRY; EPISTASIS, GENETIC; GENE REGULATORY NETWORKS; GENES, BACTERIAL; HUMANS; MODELS, GENETIC; MODELS, STATISTICAL; PHENOTYPE; VIBRIO CHOLERAE;

EID: 61949239349     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (17)

1. A. Ali, J. Johnson, A. Franco, D. Metzger, T. Connell, J. Morris. JR., S. Sozhamannan, Infect Immun. 68:63792 (2000).
2. M. Bansal, V. Belcastro, A. Ambesi-Impiombato, and D. di Bernard, Molecular Systems Biology 3:78 (2007).
3. W. Bateson, Mendel's Principles of Heredity, Cambridge University Press, Cambridge (1909).
4. S. Beyhan, K. Bilecen, S. Salama, C. Casper-Lindley, and F. Yildiz, J Bacteriol., 189388 (2007).
5. D. Eaton, K. Murphy, Proceedings of the Eleventh International Conference on Artificial Intelligence and Statistics, (2007).
6. J. Fong, F. Yildiz, J Bacteriol., 189:6 2319 (2007).
7. N. Friedman, M. Linial, I. Nachman, and D. Pe'er, Journal of Computational Biology. 7, 601 (2000).
8. L.S. Huang and P.W. Sternberg, WormBook, 14:1-19 (2006).
9. F. Markowetz and R. Spang, BMC Bioinformatics 8 (2007).
10. J. Pearl, Causality: Models, Reasoning, and Inference, Cambridge University Press, Cambridge (2000).
11. D. Pe'er, A. Regev, G. Elidan, and N. Friedman, Bioinformatics 17S1 S215 (2001).
12. K. Sachs, O. Perez, D. Pe'er, D. Lauffenburger, and G. Nolan, Science 308 523 (2005).
13. E. Segal, R. Yelensky, and D. Koller, Bioinformatics 19 i273-i282 (2003).
14. N. Van Driessche, J. Demsar, E. O. Booth, P. Hill, P. Juvan, B. Zupan, A. Kuspa, and G. Shaulsky, Nature Genetics 37:5 (2005).
15. F. Yildiz, X. Liu, A. Heydorn, G. Schoolnik, Molecular Microbiology, 53497 (2004).
16. J. Yu, V.A. Smith, P.P. Wang, A.J. Hartemink, E.D. Jarvis, Bioinformatics 20:18 3594 (2004).
17. http://sysbio.soe. ucsc.edu/projects/knockoutnets