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Volumn , Issue , 2009, Pages 190-202

Reverse engineering the evolution of protein interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

GENE NETWORKS; GENE TREE; NETWORK EVOLUTION; PROTEIN INTERACTION; PROTEIN INTERACTION NETWORKS;

EID: 61949109355     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (21)

References (30)
  • 3
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin A C, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415:141-147.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1
  • 4
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • Gavin A C, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440:631-636.
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.C.1
  • 5
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    • Krogan N J, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440:637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1
  • 6
    • 33847064282 scopus 로고    scopus 로고
    • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    • Reguly T, et al. (2006) Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. J Bioi 5:11.
    • (2006) J Bioi , vol.5 , pp. 11
    • Reguly, T.1
  • 9
    • 33645732240 scopus 로고    scopus 로고
    • Modeling cellular machinery through biological network comparison
    • Sharan R, Ideker T (2006) Modeling cellular machinery through biological network comparison. Nat Biotechnol 24:427-433.
    • (2006) Nat Biotechnol , vol.24 , pp. 427-433
    • Sharan, R.1    Ideker, T.2
  • 10
    • 34848913963 scopus 로고    scopus 로고
    • Evolution of protein complexes by duplication of homomeric interactions
    • Pereira-Leal J, Levy E, Kamp C, Teichmann S (2007) Evolution of protein complexes by duplication of homomeric interactions. Genome Bioi 8:R51.
    • (2007) Genome Bioi , vol.8
    • Pereira-Leal, J.1    Levy, E.2    Kamp, C.3    Teichmann, S.4
  • 12
    • 17844390103 scopus 로고    scopus 로고
    • Novel specificities emerge by stepwise duplication of functional modules
    • DOI 10.1101/gr.3102105
    • Pereira-Leal J B, Teichmann S A (2005) Novel specificities emerge by stepwise duplication of functional modules. Genome Res 15:552-559. (Pubitemid 41057817)
    • (2005) Genome Research , vol.15 , Issue.4 , pp. 552-559
    • Pereira-Leal, J.B.1    Teichmann, S.A.2
  • 14
    • 33847634233 scopus 로고    scopus 로고
    • Evidence of interaction network evolution by whole-genome duplications: A case study in MADS-box proteins
    • DOI 10.1093/molbev/msl197
    • Veron A S, Kaufmann K, Bomberg-Bauer E (2007) Evidence of interaction network evolution by whole-genome duplications: A case study in mads-box proteins. Mol Bioi Evol 24:670-678. (Pubitemid 46355793)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.3 , pp. 670-678
    • Veron, A.S.1    Kaufmann, K.2    Bornberg-Bauer, E.3
  • 15
    • 38049136510 scopus 로고    scopus 로고
    • Reconstruction of ancestral protein interaction networks for the bzip transcription factors
    • Pinney J W, Amoutzias G D, Rattray M, Robertson D L (2007) Reconstruction of ancestral protein interaction networks for the bzip transcription factors. Proc Natl Acad Sci USA 104:20449-20453.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20449-20453
    • Pinney, J.W.1    Amoutzias, G.D.2    Rattray, M.3    Robertson, D.L.4
  • 19
    • 0034943378 scopus 로고    scopus 로고
    • The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes
    • Wagner A (2001) The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. Mol Biol Evol18:1283-1292. (Pubitemid 32660673)
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.7 , pp. 1283-1292
    • Wagner, A.1
  • 20
    • 15544389841 scopus 로고    scopus 로고
    • Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
    • DOI 10.1534/genetics.104.037051
    • He X, Zhang J (2005) Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169:1157-1164. (Pubitemid 40404340)
    • (2005) Genetics , vol.169 , Issue.2 , pp. 1157-1164
    • He, X.1    Zhang, J.2
  • 21
    • 34250361148 scopus 로고    scopus 로고
    • Still stratus not altocumulus: Further evidence against the date/party hub distinction
    • Batada N N, et al. (2007) Still stratus not altocumulus: further evidence against the date/party hub distinction. PLoS Biol 5:e154.
    • (2007) PLoS Biol , vol.5
    • Batada, N.N.1
  • 23
    • 34548501747 scopus 로고    scopus 로고
    • Natural history and evolutionary principles of gene duplication in fungi
    • DOI 10.1038/nature06107, PII NATURE06107
    • Wapinski I, Pfeffer A, Friedman N, Regev A (2007) Natural history and evolutionary principles of gene duplication in fungi. Nature 449:54-61. (Pubitemid 47373776)
    • (2007) Nature , vol.449 , Issue.7158 , pp. 54-61
    • Wapinski, I.1    Pfeffer, A.2    Friedman, N.3    Regev, A.4
  • 24
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • DOI 10.1038/nature02424
    • Kellis M, Birren B W, Lander E S (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast saccharomyces cerevisiae. Nature 428:617-624. (Pubitemid 38524797)
    • (2004) Nature , vol.428 , Issue.6983 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 25
    • 34547558890 scopus 로고    scopus 로고
    • Not all scalefree networks are born equal: The role of the seed graph in PPI network evolution
    • Hormozdiari F, Berenbrink P, Przulj N, Sahinalp S C (2007) Not all scalefree networks are born equal: The role of the seed graph in PPI network evolution. PLoS Comput Biol 3:e118.
    • (2007) PLoS Comput Biol , vol.3
    • Hormozdiari, F.1    Berenbrink, P.2    Przulj, N.3    Sahinalp, S.C.4
  • 27
    • 1842580761 scopus 로고    scopus 로고
    • Functional and topological characterization of protein interaction networks
    • DOI 10.1002/pmic.200300636
    • Yook S H, Oltvai Z N, Barabasi A L (2004) Functional and topological characterization of protein interaction networks. Pmteomics 4:928-942. (Pubitemid 38445953)
    • (2004) Proteomics , vol.4 , Issue.4 , pp. 928-942
    • Yook, S.-H.1    Oltvai, Z.N.2    Barabasi, A.-L.3
  • 28
    • 24944442468 scopus 로고    scopus 로고
    • Effect of sampling on topology predictions of protein-protein interaction networks
    • DOI 10.1038/nbt1116
    • Han J D J, Dupuy D, Bertin N, Cusick M E, Vidal M (2005) Effect of sampling on topology predictions of protein-protein interaction networks. Nat Biotechnol 23:839-844. (Pubitemid 43093127)
    • (2005) Nature Biotechnology , vol.23 , Issue.7 , pp. 839-844
    • Han, J.-D.J.1    Dupuy, D.2    Bertin, N.3    Cusick, M.E.4    Vidal, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.