Genetic diversity and distribution of tomato-infecting begomoviruses in Iran

Virus Genes

Volumn 38, Issue 2, 2009, Pages 311-319

  Fazeli, Roya ^a   Heydarnejad, Jahangir ^a   Massumi, Hossain ^a   Shaabanian, Mahdi ^a   Varsani, Arvind ^b,c  

^a SHAHID BAHONAR UNIVERSITY OF KERMAN   (Iran)

^b UNIVERSITY OF CAPE TOWN   (South Africa)

^c UNIVERSITY OF CANTERBURY   (New Zealand)

Author keywords

Begomovirus; Geminivirus; Mixed infection; TLCV; Tomato leaf curl disease

Indexed keywords

COAT PROTEIN; NUCLEOTIDE; VIRUS DNA;

AMINO TERMINAL SEQUENCE; ARTICLE; BEGOMOVIRUS; CHROZOPHORA HIEROSOLYMITANA; GEMINIVIRUS; GENETIC VARIABILITY; HERNIARIA; IRAN; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTHERN EUROPE; TOMATO; TOMATO LEAF CURL DISEASE; VIRUS INFECTION; WEED;

BEGOMOVIRUS; CARYOPHYLLACEAE; CLUSTER ANALYSIS; DNA, VIRAL; EPIDEMIOLOGY, MOLECULAR; EUPHORBIACEAE; GENETIC VARIATION; GENOTYPE; IRAN; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VIRAL PROTEINS;

BEGOMOVIRUS; CARYOPHYLLACEAE; CHROZOPHORA; GEMINIVIRIDAE; HERNIARIA; LYCOPERSICON ESCULENTUM; TOMATO LEAF CURL NEW DELHI VIRUS; TOMATO YELLOW LEAF CURL VIRUS - GEZIRA;

EID: 61849096708     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-008-0310-5     Document Type: Article

References (47)

1. K. Bananej, A. Ahoonmanesh, N. Shahraeen, in Proceeding of the 13th Iranian Plant Protection Congress (Karaj, Iran, 1998), p. 193
2. K Bananej A Kheyr-Pour G Hossieni A Ahoonmanesh 2004 Arch. Virol. 149 1435 1443 10.1007/s00705-004-0308-9
3. A Behjatnia K Izadpanah IB Dry A Rezaian 2003 Iran. J. Plant. Pathol. 40 77 94
4. M Boni D Posada MW Feldman 2007 Genetics 176 1035 1047 10.1534/genetics.106.068874
5. RW Briddon SE Bull S Mansoor I Amin PG Markham 2002 Mol. Biotechnol. 20 315 318 10.1385/MB:20:3:315
6. RW Briddon SE Bull I Amin S Mansoor ID Bedford N Rishi SS Siwatch Y Zafar AM Abdel-Salam PG Markham 2004 Virology 324 462 474 10.1016/j.virol.2004.03.041
7. JK Brown 2000 Virus Res. 71 233 260 10.1016/S0168-1702(00)00221-5
8. JK Brown AM Idris I Torres-Jerez GK Banks SD Wyatt 2001 Arch. Virol. 146 1581 1598 10.1007/s007050170080
9. JK Brown AM Idris 2005 Ann. Entomol. Soc. Am. 98 827 837 10.1603/0013-8746(2005)098[0827:GDOWBT]2.0.CO;2
10. D Deng PF Mcgrath DJ Robinson BD Harrison 1994 Ann. Appl. Biol. 125 327 336 10.1111/j.1744-7348.1994.tb04973.x
11. IB Dry JE Rigden LR Krake PM Mullineaux MA Rezaian 1993 J. Gen. Virol. 74 147 151 10.1099/0022-1317-74-1-147
12. CM Fauquet J Stanley 2005 Arch. Virol. 150 2151 2179 10.1007/s00705-005- 0583-0
13. S Garcia-Andres DM Tomas S Sanchez-Campos J Navas-Castillo E Moriones 2007 Virology 365 210 219 10.1016/j.virol.2007.03.045
14. S García-Andrés GP Accotto J Navas-Castillo E Moriones 2007 Virology 359 302 312
15. MJ Gibbs JS Armstrong AJ Gibbs 2000 Bioinformatics 16 573 582 10.1093/bioinformatics/16.7.573
16. M Hajimorad A Kheyr-Pour V Alavi A Ahoonmanesh M Bahar MA Rezaian B Gronenborn 1996 Plant Pathol. 45 418 425 10.1046/j.1365-3059.1996.d01-151.x
17. L Hanley-Bowdoin SB Settlage BM Orozco S Nagar D Robertson 1999 Crit. Rev. Plant Sci. 18 71 106 10.1016/S0735-2689(99)00383-4
18. M Hussain S Mansoor S Iram AN Fatima Y Zafar 2005 J. Virol. 79 4434 4439 10.1128/JVI.79.7.4434-4439.2005
19. R. Kalendar, FastPCR: a PCR primer design and repeat sequence searching software with additional tools for the manipulation and analysis of DNA and protein. http://www.biocenter.helsinki.fi/bi/programs/fastpcr.htm. Accessed 2007
20. A Kheyr-Pour M Bendahmane V Matzeit GP Accotto S Crespi B Groenenborn 1991 Nucleic Acids Res. 19 6763 6769 10.1093/nar/19.24.6763
21. A Kheyr-Pour K Bananej GA Dafalla P Caciagli E Noris A Ahoonmanesh H Lecoq B Gronenborn 2000 Phytopathology 90 629 635 10.1094/PHYTO.2000.90.6.629
22. P Lefeuvre DP Martin M Hoareau F Naze H Delatte M Thierry A Varsani N Becker B Reynaud JM Lett 2007 J. Gen. Virol. 88 3458 3468 10.1099/vir.0.83252-0
23. ZH Li XP Zhou X Zhoung Y Xie 2004 Arch. Virol. 149 1721 1732
24. S Mansoor SH Khan M Saeed A Bashir Y Zafar KA Malik 1997 Plant Dis. 81 958 10.1094/PDIS.1997.81.8.958C
25. S Mansoor SH Khan M Hussain N Mushtag Y Zafar KA Malik 2000 Plant Dis. 84 102 10.1094/PDIS.2000.84.1.102A
26. D Martin E Rybicki 2000 Bioinformatics 16 562 563 10.1093/bioinformatics/ 16.6.562
27. DP Martin C Williamson D Posada 2005 Bioinformatics 21 260 262 10.1093/bioinformatics/bth490
28. DP Martin D Posada KA Crandall C Williamson 2005 AIDS Res. Hum. Retroviruses 21 98 102 10.1089/aid.2005.21.98
29. J Maynard Smith 1992 J. Mol. Evol. 34 126 129
30. F Monci S Sanchez-Campos J Navas-Castillo E Moriones 2002 Virology 303 317 326 10.1006/viro.2002.1633
31. N Navot E Pichersky M Zeidan D Zamir H Czosnek 1991 Virology 185 151 161 10.1016/0042-6822(91)90763-2
32. BE Owor DP Martin DN Shepherd R Edema AL Monjane EP Rybicki JA Thomson A Varsani 2007 J. Gen. Virol. 88 3154 3165 10.1099/vir.0.83144-0
33. M Padidam RN Beachy CM Fauquet 1995 J. Gen. Virol. 76 249 263 10.1099/0022-1317-76-2-249
34. M Padidam RN Beachy CM Fauquet 1995 J. Gen. Virol. 76 25 35 10.1099/0022-1317-76-1-25
35. M Padidam S Sawyer CM Fauquet 1999 Virology 265 218 225 10.1006/viro.1999.0056
36. D Posada KA Crandall 2002 J. Mol. Evol. 54 396 402
37. MR Rojas RL Gilbertson DR Russell DP Maxwell 1993 Plant Dis. 77 340 347
38. MR Rojas C Hagen WJ Lucas RL Gilbertson 2005 Annu. Rev. Phytopathol. 43 361 394 10.1146/annurev.phyto.43.040204.135939
39. D Shahriary K Bananej 1998 J. Appl. Entomol. Phytopathol. 65 29 30
40. SS Sohrab B Mandal RP Pant A Varma 2003 Plant Dis. 87 1148 10.1094/PDIS.2003.87.9.1148A
41. J. Stanley, D.M. Bisaro, R.W. Briddon, J.K. Brown, C.M. Fauquet, B.D. Harrison,E.P. Rybicki, D.C. Stenger, in Virus Taxonomy: The eighth Report of the International Committee on Taxonomy of Viruses, ed. by C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Academic Press, New York, 2005), pp. 301-326
42. K Tamura J Dudley M Nei S Kumar 2007 Mol. Biol. Evol. 24 1596 1599
43. JD Thompson DG Higgins TJ Gibson 1994 Nucleic Acids Res. 22 4673 4680 10.1093/nar/22.22.4673
44. K.S. Usharani, B. Surendranath, S.M. Paul-Khurana, L.D. Garg, V.G. Malathi, New Dis. Rep. 7. http://www.bspp.org.uk/ndr/. Accessed 2003
45. A Varsani DN Shepherd AL Monjane BE Owor JB Erdmann EP Rybicki M Peterschmitt RW Briddon PG Markham S Oluwafemi OP Windram P Lefeuvre J-M Lett DP Martin 2008 J. Gen. Virol. 89 2063 2074 10.1099/vir.0.2008/003590-0
46. Y Zhang JK Uyemoto BC Kirkpatrick 1998 J. Virol. Methods 71 45 50 10.1016/S0166-0934(97)00190-0
47. X Zhou Y Liu L Calvert C Munoz GW Otim-Nape DJ Robinson BD Harrison 1997 J. Gen. Virol. 78 2102 2111