Genetic diversity of pestivirus isolates in cattle from Western Austria

Veterinary Microbiology

Volumn 135, Issue 3-4, 2009, Pages 205-213

  Hornberg, Andrea ^a   Fernández, Sandra Revilla ^a   Vogl, Claus ^b   Vilcek, Stefan ^c   Matt, Monika ^a   Fink, Maria ^a   Köfer, Josef ^a,b   Schöpf, Karl ^a  

^a AUSTRIAN AGENCY FOR HEALTH AND FOOD SAFETY   (Austria)

^b UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^c UNIVERSITY OF VETERINARY MEDICINE   (Slovakia)

Author keywords

BVDV; Genetic typing; Pestivirus; Sequencing

Indexed keywords

AMINO TERMINAL AUTOPROTEINASE; PROTEINASE; UNCLASSIFIED DRUG;

5' UNTRANSLATED REGION; ARTICLE; AUSTRIA; BOVINE DIARRHEA VIRUS; CATTLE; GENE AMPLIFICATION; GENETIC DISTANCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOTYPE; HERD; NONHUMAN; NUCLEOTIDE SEQUENCE; PESTIVIRUS; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; VIRUS STRAIN;

5' UNTRANSLATED REGIONS; ANIMALS; AUSTRIA; CATTLE; DIARRHEA VIRUS 1, BOVINE VIRAL; DIARRHEA VIRUS 2, BOVINE VIRAL; DIARRHEA VIRUSES, BOVINE VIRAL; GENETIC VARIATION; GENOTYPE; PESTIVIRUS; PESTIVIRUS INFECTIONS; PHYLOGENY; RECOMBINATION, GENETIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL;

BORNA DISEASE VIRUS; BOS; BOVINAE; BOVINE VIRAL DIARRHEA VIRUS 1; BOVINE VIRAL DIARRHEA VIRUS 2; PESTIVIRUS;

EID: 61849085278     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2008.09.068     Document Type: Article

References (45)

1. Baker J.C. The clinical manifestations of bovine viral diarrhea infection. Vet. Clin. North Am. 11 3 (1995) 425-445
2. Barros S.C., Ramos F., Pauperio S., Thompson G., and Fevereiro M. Phylogenetic analysis of Portuguese bovine viral diarrhoea virus. Virus Res. 118 (2006) 192-195
3. Becher P., Orlich M., Shannon A.D., Horner G., König M., and Thiel H.J. Phylogenetic analysis of pestiviruses from domestic and wild ruminants. J. Gen. Virol. 78 (1997) 1357-1366
4. Becher P., Orlich M., Kosmidou A., König M., Baroth M., and Thiel H.J. Genetic diversity of pestiviruses: identification of novel groups and implication for classification. Virology 262 (1999) 64-71
5. Becher P., Avalos Ramirez R., Orlich M., Cedillo Rosales S., König M., Schweizer M., Stalder H., Schirrmeier H., and Thiel H.J. Genetic and antigenic characterization of novel pestivirus genotypes: implications for classification. Virology 311 (2003) 96-104
6. Couvreur B., Letellier C., Collard A., Quenon P., Dehan P., Hamers C., Pastoret P.P., and Kerkhofs P. Genetic and antigenic variability in bovine viral diarrhea virus (BVDV) isolates from Belgium. Virus Res. 85 (2002) 17-28
7. Falcone E., Cordioli P., Tarantino M., Muscillo M., La Rosa G., and Tollis M. Genetic heterogeneity of bovine viral diarrhoea virus in Italy. Vet. Res. Commun. 27 (2003) 485-494
8. Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., and Ball L.A. Virus Taxonomy (2005), Elsevier Academic Press, San Diego pp. 988-992
9. Felsenstein, J., 2005. PHYLIP (Phylogeny Inference Package) version 3.6. Distibuted by the author. Department of Genome Sciences, University of Washington, Seattle. http://evolution.genetics.washington.edu/phylip.html.
10. Flores E.F., Ridpath J.F., Weiblen R., Vogel F.S.F., and Gil L.H.V.G. Phylogenetic analysis of Brazilian bovine viral diarrhea virus type 2 (BVDV-2) isolates: evidence for a subgenotype within BVDV-2. Virus Res. 87 (2002) 51-60
11. Gaede W., Reiting R., Schirrmeier H., Depner K.R., and Beer M. Nachweis und Spezies-spezifische Differenzierung von Pestiviren mit der real-time RT-PCR. Berl. Münch. Tierärztl. Wschr. 118 3/4 (2005) 113-120
12. Giangaspero M., Harasawa R., Zecconi A., and Luzzago C. Genotypic characteristics of bovine viral diarrhea virus 2 strains isolated in Northern Italy. J. Vet. Med. Sci. 63 9 (2001) 1045-1049
13. Hamers C., Lecomte C., Kulcsar G., Lambot M., and Pastoret P.P. Persistently infected cattle stabilise bovine viral diarrhea virus leading to herd specific strains. Vet. Microbiol. 61 (1998) 177-182
14. Houe H. Epidemiological features and economical importance of bovine virus diarrhoea virus (BVDV) infections. Vet. Microbiol. 64 (1999) 89-107
15. Hurtado A., Garcia-Perez A.L., Aduriz G., and Juste R.A. Genetic diversity of ruminant pestiviruses from Spain. Virus Res. 92 (2003) 67-73
16. Hyndman L., Vilcek S., Conner J., and Nettleton P.F. A novel nested reverse transcription PCR detects bovine viral diarrhoea virus in fluids from aborted bovine fetuses. J. Virol. Methods 71 (1998) 69-76
17. Jackova A., Novackova M., Pelletier C., Audeval C., Gueneau E., Haffar A., Petit E., Rehby L., and Vilcek S. The extended genetic diversity of BVDV-1: typing of BVDV isolates from France. Vet. Res. Commun. 32 (2008) 7-11
18. Jones L.R., Zandomeni R., and Weber E.L. Genetic typing of bovine viral diarrhea virus isolates from Argentina. Vet. Microbiol. 81 (2001) 367-375
19. Klein D., Janda P., Steinborn R., Müller M., Salmons B., and Günzburg W.H. Proviral load determination of different feline immunodeficiency virus isolates using real-time polymerase chain reaction: influence of mismatches on quantification. Electrophoresis 20 (1999) 291-299
20. Kolesarova M., Franz S., Jackova A., Vilcek S., Möstl K., Benetka V., Schöpf K., Schoder G., Hofer J., and Baumgartner W. Genetic typing of bovine viral diarrhoea virus from Austrian field samples. Wien. Tierärztl. Mschr. 91 (2004) 265-268
21. Krametter-Froetscher R., Kohler H., Benetka V., Moestl K., Golja F., Vilcek S., and Baumgartner W. Influence of communal alpine pasturing on the spread of pestiviruses among sheep and goats in Austria: first identification of border disease virus in Austria. Zoonoses Public Health 54 (2007) 209-213
22. Lindberg A.L.E., and Alenius S. Principles for eradication of bovine viral diarrhoea virus (BVDV) infections in cattle populations. Vet. Microbiol. 64 (1999) 197-222
23. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
24. McGoldrick A., Lowings J.P., Ibata G., Sands J.J., Belak S., and Paton D.J. A novel approach to the detection of classical swine fever virus by RT-PCR with a fluorogenic probe (TaqMan). J. Virol. Methods 72 (1998) 125-135
25. McVean G., Awadalla P., and Fearnhead P. A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160 (2002) 1231-1241
26. Nagai M., Hayashi M., Sugita S., Sakoda Y., Mori M., Murakami T., Ozawa T., Yamada N., and Akashi H. Phylogenetic analysis of bovine viral diarrhea viruses using five different genetic regions. Virus Res. 99 (2004) 103-113
27. Olafson P., and Rickard C.G. Further observations on the virus diarrhea (new transmissible disease) of cattle. Cornell Vet. 37 (1947) 104-106
28. Park J.S., Moon H.J., Lee B.C., Hwang W.S., Yoo H.S., Kim D.Y., and Park B.K. Comparative analysis on the 5′-untranslated region of bovine viral diarrhea virus isolated in Korea. Res. Vet. Sci. 76 (2004) 157-163
29. Paton D.J. Pestivirus diversity. J. Comp. Pathol. 112 (1995) 215-236
30. Paton D.J., Carlsson U., Lowings J.P., Sands J.J., Vilcek S., and Alenius S. Identification of herd-specific bovine viral diarrhoea virus isolates from infected cattle and sheep. Vet. Microbiol. 43 (1995) 283-294
31. Pizarro-Lucero J., Celedon M.O., Aguilera M., and de Calisto A. Molecular characterization of pestiviruses isolated from bovines in Chile. Vet. Microbiol. 115 (2006) 208-217
32. Ridpath J.F., Bolin S.R., and Dubovi E.J. Segregation of bovine viral diarrhoea virus into genotypes. Virology 205 (1994) 66-74
33. Schöpf K., Gaede W., and Matt M. Erfahrungen zur Bekämpfung der Bovinen Virus Diarrhoe (BVD/MD) mit spezieller Berücksichtigung der Verbreitung von BVDV-Genotypen im Bundesland Tirol. Wien. Tierärztl. Mschr. 92 (2005) 254-258
34. Stahl K., Kampa J., Baule C., Isaksson M., Moreno-Lopez J., Belak S., Alenius S., and Lindberg A. Molecular epidemiology of bovine viral diarrhoea during the final phase of the Swedish BVD-eradication programme. Prev. Vet. Med. 72 (2005) 103-108
35. Stalder H.P., Meier P., Pfaffen G., Wageck-Canal C., Rüfenacht J., Schaller P., Bachofen C., Marti S., Vogt H.R., and Peterhans E. Genetic heterogeneity of pestiviruses of ruminants in Switzerland. Prev. Vet. Med. 72 (2005) 37-41
36. Tajima M., Frey H.R., Yamato O., Maede Y., Moennig V., Scholz H., and Greiser-Wilke I. Prevalence of genotypes 1 and 2 of bovine viral diarrhea virus in Lower Saxony, Germany. Virus Res. 76 (2001) 31-42
37. Toplak I., Sandvik T., Barlic-Maganja D., Grom J., and Paton D.J. Genetic typing of bovine viral diarrhoea virus: most Slovenian isolates are of genotypes 1d and 1f. Vet. Microbiol. 99 (2004) 175-185
38. Uttenthal A., Stedejek T., and Nylin B. Genetic diversity of bovine viral diarrhoea viruses (BVDV) in Denmark during a 10-year eradication period. APMIS 113 (2005) 536-541
39. Vilcek S., Herring A.J., Herring J.A., Nettleton P.F., Lowings J.P., and Paton D.J. Pestiviruses isolated from pigs, cattle and sheep can be allocated into at least three genogroups using polymerase chain reaction and restriction endonuclease analysis. Arch. Virol. 136 (1994) 309-323
40. Vilcek S., Drew T.W., McGoldrick A., and Paton D.J. Genetic typing of bovine pestiviruses from England and Wales. Vet. Microbiol. 69 (1999) 227-237
41. Vilcek S., Paton D.J., Durkovic B., Strojny L., Ibata G., Moussa A., Loitsch A., Rossmanith W., Vega S., Scicluna M.T., and Palfi V. Bovine viral diarrhoea virus genotype 1 can be separated into at least eleven genetic groups. Arch. Virol. 146 (2001) 99-115
42. Vilcek S., Durkovic B., Bobakova M., Sharp G., and Paton D.J. Identification of bovine viral diarrhoea virus 2 in cattle in Slovakia. Vet. Rec. 151 (2002) 150-152
43. Vilcek S., Greiser-Wilke I., Durkovic B., Obritzhauser W., Deutz A., and Köfer J. Genetic diversity of recent bovine viral diarrhoea viruses from the southeast of Austria (Styria). Vet. Microbiol. 91 (2003) 285-291
44. Vilcek S., Durkovic B., Kolesarova M., Greiser-Wilke I., and Paton D. Genetic diversity of bovine viral diarrhoea virus (BVDV) isolates: identification of a new BVDV-1 genetic group. Vet. Res. 35 (2004) 609-615
45. Wolfmeyer A., Wolf G., Beer M., Strube W., Hehnen H.R., Schmeer N., and Kaaden O.R. Genomic (5′-UTR) and serological differences among German BVDV field isolates. Arch. Virol. 142 (1997) 2049-2057