메뉴 건너뛰기




Volumn 435, Issue 1-2, 2009, Pages 23-28

The complete mitochondrial genome of the Sichuan Hill Partridge (Arborophila rufipectus) and a phylogenetic analysis with related species

Author keywords

Arborophila rufipectus; Mitochondrial genome; Phasianidae; phylogenetic relationship

Indexed keywords

MITOCHONDRIAL PROTEIN; RIBOSOME RNA; TRANSFER RNA;

EID: 61649126816     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.01.001     Document Type: Article
Times cited : (36)

References (47)
  • 1
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • Anderson S., et al. Sequence and organization of the human mitochondrial genome. Nature 290 (1981) 457-465
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.1
  • 2
    • 0034801249 scopus 로고    scopus 로고
    • Phylogenetic Utility of Avian Ovomucoid Intron G: A Comparison of Nuclear and Mitochondrial Phylogenies in Galliformes
    • Armstrong M.H., Braun E.L., and Kimball R.T. Phylogenetic Utility of Avian Ovomucoid Intron G: A Comparison of Nuclear and Mitochondrial Phylogenies in Galliformes. The Auk 118 (2001) 799-804
    • (2001) The Auk , vol.118 , pp. 799-804
    • Armstrong, M.H.1    Braun, E.L.2    Kimball, R.T.3
  • 3
    • 0036019718 scopus 로고    scopus 로고
    • A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences
    • Birks S.M., and Edwards S.V. A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 23 (2002) 408-421
    • (2002) Mol. Phylogenet. Evol. , vol.23 , pp. 408-421
    • Birks, S.M.1    Edwards, S.V.2
  • 4
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 5
    • 0000954024 scopus 로고
    • Catalogue of fossil birds, part 2 (Anseriformes through Galliformes)
    • Brodkorb P. Catalogue of fossil birds, part 2 (Anseriformes through Galliformes). Bull. Florida State Mus. Biol. Sci. 8 (1964) 195-335
    • (1964) Bull. Florida State Mus. Biol. Sci. , vol.8 , pp. 195-335
    • Brodkorb, P.1
  • 6
    • 0022979903 scopus 로고
    • Structural conservation and variation in the D-loop containing region of vertebrate mitochondrial DNA
    • Brown G.G., Gadaleta G., Pepe G., Saccone C., and Sbiza E. Structural conservation and variation in the D-loop containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192 (1986) 503-511
    • (1986) J. Mol. Biol. , vol.192 , pp. 503-511
    • Brown, G.G.1    Gadaleta, G.2    Pepe, G.3    Saccone, C.4    Sbiza, E.5
  • 8
    • 0013273843 scopus 로고
    • The evolution of guineafowl: (Galliformes, Phasianidae, Numidinae): taxonomy, phylogeny, speciation and biogeography
    • Crowe T.M. The evolution of guineafowl: (Galliformes, Phasianidae, Numidinae): taxonomy, phylogeny, speciation and biogeography. Ann. S. Afr. Mus. 76 (1978) 43-136
    • (1978) Ann. S. Afr. Mus. , vol.76 , pp. 43-136
    • Crowe, T.M.1
  • 9
    • 33845472296 scopus 로고    scopus 로고
    • Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data
    • Crowe T.M., et al. Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data. Cladistics 22 (2006) 495-532
    • (2006) Cladistics , vol.22 , pp. 495-532
    • Crowe, T.M.1
  • 11
    • 0036038208 scopus 로고    scopus 로고
    • Phylogeny of Tetraoninae and other galliform birds using mitochondrial12S and ND2 genes
    • DimcheV D.E., Drovetski S.V., and Mindell D.P. Phylogeny of Tetraoninae and other galliform birds using mitochondrial12S and ND2 genes. Mol. Phylogenet. Evol. 24 (2002) 203-215
    • (2002) Mol. Phylogenet. Evol. , vol.24 , pp. 203-215
    • DimcheV, D.E.1    Drovetski, S.V.2    Mindell, D.P.3
  • 12
    • 0003701676 scopus 로고
    • del Hoyo J., Elliott A., and Sargatal J. (Eds), New World Vultures to Guineafowls. Lynx Edicions, Barcelona
    • In: del Hoyo J., Elliott A., and Sargatal J. (Eds). Handbook of the Birds of the World Vol. 2 (1994), New World Vultures to Guineafowls. Lynx Edicions, Barcelona
    • (1994) Handbook of the Birds of the World , vol.2
  • 13
    • 0037323320 scopus 로고    scopus 로고
    • Suprageneric relationships of galliform birds (Aves, Galliformes): a cladistic analysis of morphological characters
    • Dyke G.J., Gulas B.E., and Crowe T.M. Suprageneric relationships of galliform birds (Aves, Galliformes): a cladistic analysis of morphological characters. Zool. J. Linn. Soc. 137 (2003) 227-244
    • (2003) Zool. J. Linn. Soc. , vol.137 , pp. 227-244
    • Dyke, G.J.1    Gulas, B.E.2    Crowe, T.M.3
  • 14
    • 0031666359 scopus 로고    scopus 로고
    • Organization and Evolution of the Mitochondrial DNA Control Region in the Avian Genus Alectoris
    • Ettore R., and Vittorio L. Organization and Evolution of the Mitochondrial DNA Control Region in the Avian Genus Alectoris. J. Mol. Evol. 47 (1998) 449-462
    • (1998) J. Mol. Evol. , vol.47 , pp. 449-462
    • Ettore, R.1    Vittorio, L.2
  • 15
    • 0002511578 scopus 로고
    • Genic variation, systematic biogeographic relationships of some galliform birds
    • Gutiérrez R.J., Zink R.M., and Yang S.Y. Genic variation, systematic biogeographic relationships of some galliform birds. The Auk 100 (1983) 33-47
    • (1983) The Auk , vol.100 , pp. 33-47
    • Gutiérrez, R.J.1    Zink, R.M.2    Yang, S.Y.3
  • 16
    • 27744598217 scopus 로고    scopus 로고
    • The phylogenetic relationships among non-diplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes)
    • Hardman M. The phylogenetic relationships among non-diplomystid catfishes as inferred from mitochondrial cytochrome b sequences; the search for the ictalurid sister taxon (Otophysi: Siluriformes). Mol. Phylogenet. Evol. 37 (2005) 700-720
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 700-720
    • Hardman, M.1
  • 17
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology [J]
    • Huelsenbeck J.P., Ronquist F., and Nielsen R. Bayesian inference of phylogeny and its impact on evolutionary biology [J]. Science 294 (2001) 2-310
    • (2001) Science , vol.294 , pp. 2-310
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3
  • 19
    • 61649124916 scopus 로고    scopus 로고
    • Jobb, G., 2008. TREEFINDER version of February 2007. Munich(Germany).
    • Jobb, G., 2008. TREEFINDER version of February 2007. Munich(Germany).
  • 21
    • 0033072176 scopus 로고    scopus 로고
    • A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic
    • Kimball R.T., Braun E.L., Zwartjies P.W., Crowe T.M., and Ligon J.D. A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Mol. Phylogenet. Evol. 11 (1999) 38-54
    • (1999) Mol. Phylogenet. Evol. , vol.11 , pp. 38-54
    • Kimball, R.T.1    Braun, E.L.2    Zwartjies, P.W.3    Crowe, T.M.4    Ligon, J.D.5
  • 22
    • 0027482104 scopus 로고
    • Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
    • Kumazawa Y., and Nishida M. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J. Mol. Evol. 37 (1993) 380-398
    • (1993) J. Mol. Evol. , vol.37 , pp. 380-398
    • Kumazawa, Y.1    Nishida, M.2
  • 23
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5 (2004) 150-163
    • (2004) Brief Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 24
    • 25144447559 scopus 로고    scopus 로고
    • Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala
    • Lavoue S., Miya M., Inoue J.G., Saitoh K., Ishiguro N.B., and Nishida M. Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala. Mol. Phylogenet. Evol. 37 (2005) 165-177
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 165-177
    • Lavoue, S.1    Miya, M.2    Inoue, J.G.3    Saitoh, K.4    Ishiguro, N.B.5    Nishida, M.6
  • 25
    • 0032855033 scopus 로고    scopus 로고
    • Molecular clock calibrations and metazoan divergence dates
    • Lee M.S.Y. Molecular clock calibrations and metazoan divergence dates. J. Mol. Evol. 49 (1999) 385-391
    • (1999) J. Mol. Evol. , vol.49 , pp. 385-391
    • Lee, M.S.Y.1
  • 26
    • 61649083545 scopus 로고    scopus 로고
    • Habitat Utilization of Sichuan Hill Partridge (Arborophila rufipectus) in the Non-breeding Period in Laojunshan Nature Reserve
    • Liao W.B., Li C., Hu J.C., and Lu X. Habitat Utilization of Sichuan Hill Partridge (Arborophila rufipectus) in the Non-breeding Period in Laojunshan Nature Reserve. Zool. Res. 28 2 (2007) 172-178
    • (2007) Zool. Res. , vol.28 , Issue.2 , pp. 172-178
    • Liao, W.B.1    Li, C.2    Hu, J.C.3    Lu, X.4
  • 27
    • 53149119326 scopus 로고    scopus 로고
    • Distribution and habitat selection of Sichuan Partridge [J]
    • Li C., Yu Z.W., and Hu J. Distribution and habitat selection of Sichuan Partridge [J]. Chin. J. Zool. 38 6 (2003) 46-51
    • (2003) Chin. J. Zool. , vol.38 , Issue.6 , pp. 46-51
    • Li, C.1    Yu, Z.W.2    Hu, J.3
  • 28
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 29
    • 47249104707 scopus 로고    scopus 로고
    • Phylogenetic position of the genus Tetraophasis (Aves, Galliformes, Phasianidae) as inferred from mitochondrial and nuclear sequences
    • Meng Y., and Dai B. Phylogenetic position of the genus Tetraophasis (Aves, Galliformes, Phasianidae) as inferred from mitochondrial and nuclear sequences. Biochem. Syst. Ecol. 36 (2008) 626-637
    • (2008) Biochem. Syst. Ecol. , vol.36 , pp. 626-637
    • Meng, Y.1    Dai, B.2
  • 30
    • 0034497887 scopus 로고    scopus 로고
    • Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion
    • Miya M., and Nishida M. Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion. Mol. Phylogenet. Evol. 17 (2000) 437-455
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 437-455
    • Miya, M.1    Nishida, M.2
  • 31
    • 30344436705 scopus 로고    scopus 로고
    • A molecular timescale for galliform birds accounting for uncertainty in time estimates and heterogeneity of rates of DNA substitutions across lineages and sites
    • Pereira S.L., and Baker A.J. A molecular timescale for galliform birds accounting for uncertainty in time estimates and heterogeneity of rates of DNA substitutions across lineages and sites. Mol. Phylogenet. Evol. 38 (2006) 499-509
    • (2006) Mol. Phylogenet. Evol. , vol.38 , pp. 499-509
    • Pereira, S.L.1    Baker, A.J.2
  • 32
    • 0346525115 scopus 로고    scopus 로고
    • Combined Nuclear and Mitochondrial DNA Sequences Resolve Generic Relationships within the Cracidae (Galliformes, Aves)
    • Pereira S.L., Baker A.J., and Wajntal A. Combined Nuclear and Mitochondrial DNA Sequences Resolve Generic Relationships within the Cracidae (Galliformes, Aves). Syst. Biol. 51 (2002) 946-958
    • (2002) Syst. Biol. , vol.51 , pp. 946-958
    • Pereira, S.L.1    Baker, A.J.2    Wajntal, A.3
  • 33
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 4 (1998) 817-818
    • (1998) Bioinformatics , vol.4 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 34
    • 0026076060 scopus 로고
    • The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern
    • Saccone C., Pesole G., and Sbisá E. The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J. Mol. Evol. 33 (1991) 83-91
    • (1991) J. Mol. Evol. , vol.33 , pp. 83-91
    • Saccone, C.1    Pesole, G.2    Sbisá, E.3
  • 36
    • 0030920779 scopus 로고    scopus 로고
    • Mitochondrial DNA maintenance in vertebrates
    • Shadel G.S., and Clayton D.A. Mitochondrial DNA maintenance in vertebrates. Annu. Rev. Biochem. 66 (1997) 409-435
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 409-435
    • Shadel, G.S.1    Clayton, D.A.2
  • 38
    • 0033161156 scopus 로고    scopus 로고
    • Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates
    • Sorenson M.D., Ast J.C., Dimcheff D.E., Yuri T., and Mindell D.P. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol. Phylogenet. Evol. 12 (1999) 105-114
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 105-114
    • Sorenson, M.D.1    Ast, J.C.2    Dimcheff, D.E.3    Yuri, T.4    Mindell, D.P.5
  • 40
    • 0001599549 scopus 로고
    • A new bird (family Cracidae) from the early Oligocene of South Dakota
    • Tordoff H.B., and Macdonald J.R. A new bird (family Cracidae) from the early Oligocene of South Dakota. Auk 74 (1957) 174-184
    • (1957) Auk , vol.74 , pp. 174-184
    • Tordoff, H.B.1    Macdonald, J.R.2
  • 42
    • 0035143484 scopus 로고    scopus 로고
    • Calibration of avian molecular clocks[J]
    • Van Tuinen M., and Hedges S.B. Calibration of avian molecular clocks[J]. Mol. Biol. Evol. 18 (2001) 206
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 206
    • Van Tuinen, M.1    Hedges, S.B.2
  • 43
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: structure and evolution Int
    • Wolstenholme D.R. Animal mitochondrial DNA: structure and evolution Int. Rev. Cytol. 141 (1992) 173-216
    • (1992) Rev. Cytol. , vol.141 , pp. 173-216
    • Wolstenholme, D.R.1
  • 44
    • 2442758725 scopus 로고
    • Observation on the winter habitats of Sichuan hill-partridge [J]
    • Xu Z.F., Mei W.Z., Zhang G., Cheng X.H., and Zeng Z.Q. Observation on the winter habitats of Sichuan hill-partridge [J]. Chin. J. Zool. 29 2 (1994) 21-23
    • (1994) Chin. J. Zool. , vol.29 , Issue.2 , pp. 21-23
    • Xu, Z.F.1    Mei, W.Z.2    Zhang, G.3    Cheng, X.H.4    Zeng, Z.Q.5
  • 45
    • 0033933640 scopus 로고    scopus 로고
    • Estimation of primate speciation dates using local molecular clocks
    • Yoder A.D., and Yang Z. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 17 (2000) 1081-1090
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1081-1090
    • Yoder, A.D.1    Yang, Z.2
  • 46
    • 0029834015 scopus 로고    scopus 로고
    • Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
    • Zardoya R., and Meyer A. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol. Biol. Evol. 13 (1996) 933-942
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 933-942
    • Zardoya, R.1    Meyer, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.