메뉴 건너뛰기




Volumn 289, Issue 1-2, 2009, Pages 19-25

Intraspecific genetic variation in mitochondrial 16S rRNA and COI genes in domestic and wild populations of Huaguizhikong scallop Chlamys nobilis Reeve

Author keywords

16S rRNA gene; Chlamys nobilis Reeve; COI gene; Genetic variation; Geographic structure

Indexed keywords

BIVALVE; COMPARATIVE STUDY; DATA SET; DOMESTIC SPECIES; GENE EXPRESSION; GENETIC VARIATION; GEOGRAPHICAL VARIATION; HATCHERY; INTRASPECIFIC VARIATION; MITOCHONDRION; MOLECULAR ANALYSIS; POLYMORPHISM; RNA; VARIANCE ANALYSIS; WILD POPULATION;

EID: 61649116886     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2009.01.004     Document Type: Article
Times cited : (29)

References (43)
  • 1
    • 0030324728 scopus 로고    scopus 로고
    • Systematics and biogeography of the genus Donax (Bivalvia: Donacidae) in Eastern North America
    • Adamkewicz S.L., and Harasewych M.G. Systematics and biogeography of the genus Donax (Bivalvia: Donacidae) in Eastern North America. Am. Malacol. Bull. 13 (1996) 97-103
    • (1996) Am. Malacol. Bull. , vol.13 , pp. 97-103
    • Adamkewicz, S.L.1    Harasewych, M.G.2
  • 2
    • 3042780524 scopus 로고    scopus 로고
    • Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocation
    • Arnaud-Haond S., Vonau V., Bonhomme F., Boudry P., Blanc F., Prou J., Seaman T., and Goyard E. Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocation. Mol. Ecol. 13 (2004) 2001-2007
    • (2004) Mol. Ecol. , vol.13 , pp. 2001-2007
    • Arnaud-Haond, S.1    Vonau, V.2    Bonhomme, F.3    Boudry, P.4    Blanc, F.5    Prou, J.6    Seaman, T.7    Goyard, E.8
  • 3
    • 0031869112 scopus 로고    scopus 로고
    • Genetic diversity and population structure in two species of sea cucumber: different patterns according to mode of development
    • Arndt A., and Smith J. Genetic diversity and population structure in two species of sea cucumber: different patterns according to mode of development. Mol. Ecol. 7 (1998) 1053-1064
    • (1998) Mol. Ecol. , vol.7 , pp. 1053-1064
    • Arndt, A.1    Smith, J.2
  • 4
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H.J., Forster P., and Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16 (1999) 37-48
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Röhl, A.3
  • 5
    • 0033072061 scopus 로고    scopus 로고
    • Ecological parallelism and cryptic species in the genus Ophiothrix derived from mitochondrial DNA sequences
    • Baric S., and Sturmbauer C. Ecological parallelism and cryptic species in the genus Ophiothrix derived from mitochondrial DNA sequences. Mol. Phylogenetics Evol. 11 (1997) 157-162
    • (1997) Mol. Phylogenetics Evol. , vol.11 , pp. 157-162
    • Baric, S.1    Sturmbauer, C.2
  • 6
    • 1642424261 scopus 로고    scopus 로고
    • Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12S rRNA genes
    • Barucca M., Olmo E., Schiaparelli S., and Canapaa A. Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12S rRNA genes. Mol. Phylogenetics Evol. 31 (2004) 89-95
    • (2004) Mol. Phylogenetics Evol. , vol.31 , pp. 89-95
    • Barucca, M.1    Olmo, E.2    Schiaparelli, S.3    Canapaa, A.4
  • 7
    • 0033793629 scopus 로고    scopus 로고
    • Affinities among Anostracan (Crustacea: Branchiopoda) families inferred from phylogenetic analyses of multiple gene sequences
    • Elpidio A.R., and Paul D.N.H. Affinities among Anostracan (Crustacea: Branchiopoda) families inferred from phylogenetic analyses of multiple gene sequences. Mol. Phylogenetics Evol. 17 (2000) 117-128
    • (2000) Mol. Phylogenetics Evol. , vol.17 , pp. 117-128
    • Elpidio, A.R.1    Paul, D.N.H.2
  • 8
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu Y.X., and Li W.H. Statistical tests of neutrality of mutations. Genetics 133 (1993) 693-709
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 9
    • 0027551797 scopus 로고
    • Interspecific and intrapopulation variation in mitochondrial ribosomal DNA sequences of Mytilus spp
    • Geller J.B., Carlton J.T., and Powers D.A. Interspecific and intrapopulation variation in mitochondrial ribosomal DNA sequences of Mytilus spp. (Bivalvia: Mollusca). Mol. Mar. Biol. Biotechnol. 2 (1993) 44-50
    • (1993) (Bivalvia: Mollusca). Mol. Mar. Biol. Biotechnol. , vol.2 , pp. 44-50
    • Geller, J.B.1    Carlton, J.T.2    Powers, D.A.3
  • 10
    • 49049134552 scopus 로고
    • Genetic variability in hatchery-produced Pacific oysters (Crassostrea gigas Thunberg)
    • Gosling E.M. Genetic variability in hatchery-produced Pacific oysters (Crassostrea gigas Thunberg). Aquaculture 26 (1982) 273-287
    • (1982) Aquaculture , vol.26 , pp. 273-287
    • Gosling, E.M.1
  • 11
    • 39149090686 scopus 로고    scopus 로고
    • Genetic structure of natural populations of the California black abalone (Haliotis cracherodii Leach, 1814), a candidate for endangered species status
    • Gruenthal K.M., and Burton R.S. Genetic structure of natural populations of the California black abalone (Haliotis cracherodii Leach, 1814), a candidate for endangered species status. J. Exp. Mar. Biol. Ecol. 355 (2008) 47-58
    • (2008) J. Exp. Mar. Biol. Ecol. , vol.355 , pp. 47-58
    • Gruenthal, K.M.1    Burton, R.S.2
  • 12
    • 0001291490 scopus 로고
    • Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster, Crassostrea gigas
    • Hedgecock D., and Sly F. Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster, Crassostrea gigas. Aquaculture 88 (1990) 21-38
    • (1990) Aquaculture , vol.88 , pp. 21-38
    • Hedgecock, D.1    Sly, F.2
  • 13
    • 0027011710 scopus 로고
    • Effective population number of shellfish broodstock estimated from temporal variance in allelic frequencies
    • Hedgecock D., Chow V., and Waples R.S. Effective population number of shellfish broodstock estimated from temporal variance in allelic frequencies. Aquaculture 88 (1992) 215-232
    • (1992) Aquaculture , vol.88 , pp. 215-232
    • Hedgecock, D.1    Chow, V.2    Waples, R.S.3
  • 14
    • 0002761623 scopus 로고
    • Does variance in reproductive success limit effective population size of marine organisms?
    • Beaumont A. (Ed), Chapman and Hall, London
    • Hedgecock D. Does variance in reproductive success limit effective population size of marine organisms?. In: Beaumont A. (Ed). Genetics and Evolution of Aquatic Organisms (1994), Chapman and Hall, London 122-134
    • (1994) Genetics and Evolution of Aquatic Organisms , pp. 122-134
    • Hedgecock, D.1
  • 15
    • 0022643552 scopus 로고
    • A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution and phylogenetic implications
    • Hixson J.E., and Brown W.M. A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution and phylogenetic implications. Mol. Biol. Evol. 3 (1986) 1-18
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 1-18
    • Hixson, J.E.1    Brown, W.M.2
  • 16
    • 33746963173 scopus 로고
    • Observation on the viability of offspring from mating of close relatives
    • (in Chinese)
    • Jiang W., and Wei Y. Observation on the viability of offspring from mating of close relatives. Hereditas (Beijing) 7 2 (1985) 19-21 (in Chinese)
    • (1985) Hereditas (Beijing) , vol.7 , Issue.2 , pp. 19-21
    • Jiang, W.1    Wei, Y.2
  • 17
    • 0026699454 scopus 로고
    • An analysis of allozyme, mitochondrial DNA and morphological variation in mussel (Mytilus galloprovincialis) populations from Greece
    • Karakousis Y., and Skibinski D.O.F. An analysis of allozyme, mitochondrial DNA and morphological variation in mussel (Mytilus galloprovincialis) populations from Greece. Experientia 48 (1992) 878-881
    • (1992) Experientia , vol.48 , pp. 878-881
    • Karakousis, Y.1    Skibinski, D.O.F.2
  • 18
    • 0026602684 scopus 로고
    • Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs
    • Karl S.A., and Avise J.C. Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs. Science 256 (1992) 100-102
    • (1992) Science , vol.256 , pp. 100-102
    • Karl, S.A.1    Avise, J.C.2
  • 19
    • 3843057906 scopus 로고    scopus 로고
    • Intraspecific genetic variation in mitochondrial 16 S ribosomal gene of Zhikong scallop Chlamys farreri
    • Kong X.Y., Yu Z.N., Liu Y.J., and Chen L.L. Intraspecific genetic variation in mitochondrial 16 S ribosomal gene of Zhikong scallop Chlamys farreri. J. Shellfish Res. 22 (2003) 655-660
    • (2003) J. Shellfish Res. , vol.22 , pp. 655-660
    • Kong, X.Y.1    Yu, Z.N.2    Liu, Y.J.3    Chen, L.L.4
  • 20
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of DNA sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of DNA sequences. J. Mol. Evol. 16 (1980) 111-120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 21
    • 0034508687 scopus 로고    scopus 로고
    • Comparative population genetic structure of marine gastropods (Littorina spp.) with and without pelagic larval dispersal
    • Kyle C.J., and Boulding E.G. Comparative population genetic structure of marine gastropods (Littorina spp.) with and without pelagic larval dispersal. Mar. Biol. 137 (2000) 835-845
    • (2000) Mar. Biol. , vol.137 , pp. 835-845
    • Kyle, C.J.1    Boulding, E.G.2
  • 22
    • 0033695442 scopus 로고    scopus 로고
    • Phylogenetic analysis of the family Pectinidae (Bivalvia) based on mitochondrial cytochrome C oxidase subunit I
    • Matsumoto M., and Hayami I. Phylogenetic analysis of the family Pectinidae (Bivalvia) based on mitochondrial cytochrome C oxidase subunit I. J. Moll. Stud. 66 (2000) 477-488
    • (2000) J. Moll. Stud. , vol.66 , pp. 477-488
    • Matsumoto, M.1    Hayami, I.2
  • 23
    • 34248143838 scopus 로고    scopus 로고
    • Phylogenetic relationship among nine scallop species (Bivalvia: Pectinidae) inferred from nucleotide sequences of one mitochondrial and three nuclear gene regions
    • Na-Nakorn U., Sukmanomon S., Yoosuk W., and Nguyen T.T.T. Phylogenetic relationship among nine scallop species (Bivalvia: Pectinidae) inferred from nucleotide sequences of one mitochondrial and three nuclear gene regions. J. Shellfish Res. 26 (2006) 25-32
    • (2006) J. Shellfish Res. , vol.26 , pp. 25-32
    • Na-Nakorn, U.1    Sukmanomon, S.2    Yoosuk, W.3    Nguyen, T.T.T.4
  • 25
    • 0001466006 scopus 로고
    • Mitochondrial DNA diversity in the sea urchins Stronglyocentrotus purpuratus and S. droebachiensis
    • Palumbi S.R., and Wilson A.C. Mitochondrial DNA diversity in the sea urchins Stronglyocentrotus purpuratus and S. droebachiensis. Evolution 44 (1990) 403-415
    • (1990) Evolution , vol.44 , pp. 403-415
    • Palumbi, S.R.1    Wilson, A.C.2
  • 27
    • 0029178096 scopus 로고
    • An exact test for population differentiation
    • Raymond M., and Rousset F. An exact test for population differentiation. Evolution 49 (1995) 1280-1283
    • (1995) Evolution , vol.49 , pp. 1280-1283
    • Raymond, M.1    Rousset, F.2
  • 28
    • 0025019461 scopus 로고
    • A genetic discontinuity in a continuously distributed species: mitochondrial DNA in the American oyster, Crassostrea virginica
    • Reeb C.A., and Avise J.C. A genetic discontinuity in a continuously distributed species: mitochondrial DNA in the American oyster, Crassostrea virginica. Genetics 124 (1990) 397-406
    • (1990) Genetics , vol.124 , pp. 397-406
    • Reeb, C.A.1    Avise, J.C.2
  • 29
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J., Sánchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 30
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S., and Misener S. (Eds), Humana Press, Totowa, NJ
    • Rozen S., and Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 31
    • 61649117789 scopus 로고    scopus 로고
    • Phylogenetic relationships of commercial European and Australasian king scallops (Pecten spp.) based on partial 16S ribosomal RNA gene sequences
    • Saavedra C., and Peña J.B. Phylogenetic relationships of commercial European and Australasian king scallops (Pecten spp.) based on partial 16S ribosomal RNA gene sequences. J. Exp. Mar. Biol. Ecol. 323 (2003) 138-150
    • (2003) J. Exp. Mar. Biol. Ecol. , vol.323 , pp. 138-150
    • Saavedra, C.1    Peña, J.B.2
  • 32
    • 0033398395 scopus 로고    scopus 로고
    • Molecular population structure of the marine benthic copepod Microarthridion littorale along the southeastern and Gulf coasts of the USA
    • Schizas N.V., Street G.T., Coull B.C., Chandler G.T., and Quattro J.M. Molecular population structure of the marine benthic copepod Microarthridion littorale along the southeastern and Gulf coasts of the USA. Mar. Biol. 135 (1999) 399-405
    • (1999) Mar. Biol. , vol.135 , pp. 399-405
    • Schizas, N.V.1    Street, G.T.2    Coull, B.C.3    Chandler, G.T.4    Quattro, J.M.5
  • 34
    • 0030866592 scopus 로고    scopus 로고
    • Intraspecific variation in the 16S ribosomal gene of Crassostrea virginica
    • Small M.P., and Chapman R.W. Intraspecific variation in the 16S ribosomal gene of Crassostrea virginica. Mol. Mar. Biol. Biotechnol. 6 (1997) 189-196
    • (1997) Mol. Mar. Biol. Biotechnol. , vol.6 , pp. 189-196
    • Small, M.P.1    Chapman, R.W.2
  • 35
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123 (1989) 585-595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 36
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 38249040666 scopus 로고
    • Genetic variability at four polymorphic loci in Japanese pearl oysters, Pinctada fucata martensii, selected for six generations
    • Wada K.T. Genetic variability at four polymorphic loci in Japanese pearl oysters, Pinctada fucata martensii, selected for six generations. Aquaculture 59 (1986) 139-146
    • (1986) Aquaculture , vol.59 , pp. 139-146
    • Wada, K.T.1
  • 39
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir B.S., and Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 38 (1984) 1358-1370
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 40
    • 0031414194 scopus 로고    scopus 로고
    • Mitochondrial genotype variation in a Siberian population of the Japanese scallop, Patinopecten yessoensis (Jay)
    • Wilbur A.E., Orbacz E.A., Wakefield J.R., and Gaffney P.M. Mitochondrial genotype variation in a Siberian population of the Japanese scallop, Patinopecten yessoensis (Jay). J. Shellfish Res. 16 (1997) 541-545
    • (1997) J. Shellfish Res. , vol.16 , pp. 541-545
    • Wilbur, A.E.1    Orbacz, E.A.2    Wakefield, J.R.3    Gaffney, P.M.4
  • 41
    • 33746970882 scopus 로고    scopus 로고
    • Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China
    • Yu D.H., and Chu K.H. Genetic variation in wild and cultured populations of the pearl oyster Pinctada fucata from southern China. Aquaculture 258 (2006) 1-4
    • (2006) Aquaculture , vol.258 , pp. 1-4
    • Yu, D.H.1    Chu, K.H.2
  • 42
    • 0042127128 scopus 로고    scopus 로고
    • Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences
    • Yu Z., Kong X., Zhang L., Guo X., and Xiang J. Taxonomic status of four Crassostrea oysters from China as inferred from mitochondrial DNA sequences. J. Shellfish Res. 22 (2003) 31-38
    • (2003) J. Shellfish Res. , vol.22 , pp. 31-38
    • Yu, Z.1    Kong, X.2    Zhang, L.3    Guo, X.4    Xiang, J.5
  • 43
    • 3843083030 scopus 로고    scopus 로고
    • The genetic structure and variation of five populations in the Chinese scallop, Chlamys farreri
    • China Ocean Press
    • Zhang G.F., and Zhang F.S. The genetic structure and variation of five populations in the Chinese scallop, Chlamys farreri. Proceedings of the fourth Asian fisheries forum. Beijing (1997), China Ocean Press 422-425
    • (1997) Proceedings of the fourth Asian fisheries forum. Beijing , pp. 422-425
    • Zhang, G.F.1    Zhang, F.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.