The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies

Journal of Biotechnology

Volumn 140, Issue 1-2, 2009, Pages 3-12

  Bekel, Thomas ^a   Henckel, Kolja ^a   Küster, Helge ^b   Meyer, Folker ^c   Mittard Runte, Virginie ^a   Neuweger, Heiko ^a   Paarmann, Daniel ^c   Rupp, Oliver ^a   Zakrzewski, Martha ^a   Pühler, Alfred ^a   Stoye, Jens ^a   Goesmann, Alexander ^a  

^a BIELEFELD UNIVERSITY   (Germany)

^b LEIBNIZ UNIVERSITY HANNOVER   (Germany)

^c ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

cDNA sequencing; DNA sequence quality control; EST clustering; Ultrafast sequencing; Whole genome shotgun sequencing

Indexed keywords

BACTERIAL GENOMES; BIOINFORMATICS ANALYSIS; BIOINFORMATICS SOFTWARES; BIOINFORMATICS TOOLS; CDNA CLONES; CDNA SEQUENCING; COMPUTATIONAL ANALYSIS; CONTIGS; DATA MANAGEMENTS; DATA TYPES; DATA-SETS; DNA SEQUENCING; EST CLUSTERING; EXPRESSED SEQUENCE TAGS; MANAGEMENT SYSTEMS; METAGENOME; SAMS; SANGER SEQUENCING; SEQUENCE ANALYSIS; SEQUENCE DATUM; ULTRAFAST SEQUENCING; WHOLE GENOME SHOTGUN SEQUENCING;

BIOINFORMATICS; CLUSTER ANALYSIS; DNA; DNA SEQUENCES; GENES; LIBRARIES; MANAGEMENT; NUCLEIC ACIDS; OPTICAL TOMOGRAPHY; QUALITY ASSURANCE; QUALITY FUNCTION DEPLOYMENT; TOTAL QUALITY MANAGEMENT;

QUALITY CONTROL;

COMPLEMENTARY DNA; CONTIG; DNA;

ARTICLE; BACTERIAL GENETICS; BIOINFORMATICS; COMPUTER PROGRAM; DNA LIBRARY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENETIC ANALYSIS; INFORMATION PROCESSING; METAGENOMICS; MOLECULAR CLONING; MOLECULAR PROBE; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE DATABASE;

CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; EXPRESSED SEQUENCE TAGS; GENE LIBRARY; GENOME, BACTERIAL; GENOMICS; INFORMATION MANAGEMENT; INFORMATION STORAGE AND RETRIEVAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SEQUENCE ANALYSIS, DNA; SOFTWARE; USER-COMPUTER INTERFACE;

BACTERIA (MICROORGANISMS);

EID: 61649088083     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2009.01.006     Document Type: Article

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