A novel meta-analysis method exploiting consistency of high-throughput experiments

Bioinformatics

Volumn 25, Issue 5, 2009, Pages 636-642

  Rajaram, Satwik ^a  

^a University of Illinois at Urbana Champaign   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; CELL CYCLE; CELL CYCLE ARREST; CELL SYNCHRONIZATION; FUNGAL GENOME; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE IDENTIFICATION; GENE NUMBER; GENETIC ANALYSIS; GENETIC SELECTION; GENOME ANALYSIS; INTERNAL CONSISTENCY; MICROARRAY ANALYSIS; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; REPRODUCIBILITY; RIBOSOME; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES POMBE; STATISTICAL ANALYSIS;

EID: 61449100604     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp007     Document Type: Article

References (12)

1. Keegan,K. et al. (2007) Meta-analysis of Drosophila Circadian Microarray-Studies identifies a novel set of rhythmically expressed genes. PLoS Comput. Biol., 3, 2087-2110.
2. Lee,H. et al. (2004) Coexpression analysis of human genes across many microarray data sets. Genome Res., 14, 1085-1094.
3. Marguerat,S. et al. (2006) The more the merrier: Comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast. Yeast, 23, 261-277.
4. Oliva,A. et al. (2005) The cell cycle-regulated genes of Schizosaccharomyces pombe. PLoS Biol., 3, e225.
5. Peng,X. et al. (2005) Identification of cell cycle-regulated genes in fission yeast. Mol. Biol. Cell, 16, 1026-1042.
6. Rustici,G. et al. (2004) Periodic gene expression program of the fission yeast cell cycle. Nat. Genet., 36, 809-817.
7. Shedden,K. and Cooper,S. (2002) Analysis of cell-cycle-specific gene expression in human cells as determined by microarrays and double-thymidine block synchronization. Proc. Natl Acad. Sci. USA, 99, 4379-4384.
8. Spellman,P.T. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
9. Taguchi,Y. and Oono,Y. (2005) Relational patterns of gene expression via non-metric multidimensional scaling analysis. Bioinformatics, 21, 730.
10. Wade,C. et al. (2001) EBP2 is a member of the yeast rrb regulon, a transcriptionally coregulated set of genes that are required for ribosome and rRNA biosynthesis. Mol. Cell. Biol., 21, 8638-8650.
11. Wade,C. et al. (2006) The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Yeast, 23 293-306.
12. Yan,X. et al. (2007) A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics 23, i577.