-
1
-
-
34047202181
-
Deciphering protein-protein interactions. Part I. Experimental techniques and databases
-
Shoemaker B.A., and Panchenko A.R. Deciphering protein-protein interactions. Part I. Experimental techniques and databases. PLoS Comput. Biol. 3 (2007) e42
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
2
-
-
34247586171
-
Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
-
Shoemaker B.A., and Panchenko A.R. Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. PLoS Comput. Biol. 3 (2007) e43
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
3
-
-
0033954256
-
The protein data bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. The protein data bank. Nucleic Acids Res. 28 (2000) 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
33846925964
-
The molecular architecture of protein-protein binding sites
-
Reichmann D., Rahat O., Cohen M., Neuvirth H., and Schreiber G. The molecular architecture of protein-protein binding sites. Curr. Opin. Struct. Biol. 17 (2007) 67-76
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 67-76
-
-
Reichmann, D.1
Rahat, O.2
Cohen, M.3
Neuvirth, H.4
Schreiber, G.5
-
6
-
-
0041312697
-
Diversity of protein-protein interactions
-
Nooren I.M.A., and Thornton J.M. Diversity of protein-protein interactions. EMBO J. 22 (2003) 3486-3492
-
(2003)
EMBO J.
, vol.22
, pp. 3486-3492
-
-
Nooren, I.M.A.1
Thornton, J.M.2
-
7
-
-
0031008575
-
On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions
-
Froloff N., Windemuth A., and Honig B. On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions. Protein Sci. 6 (1997) 1293-1301
-
(1997)
Protein Sci.
, vol.6
, pp. 1293-1301
-
-
Froloff, N.1
Windemuth, A.2
Honig, B.3
-
8
-
-
36549009679
-
Optimization of electrostatic interactions in protein-protein complexes
-
Brock K., Talley K., Coley K., Kundrotas P., and Alexov E. Optimization of electrostatic interactions in protein-protein complexes. Biophys. J. 93 (2007) 3340-3352
-
(2007)
Biophys. J.
, vol.93
, pp. 3340-3352
-
-
Brock, K.1
Talley, K.2
Coley, K.3
Kundrotas, P.4
Alexov, E.5
-
9
-
-
33748261419
-
Electrostatic contribution to the binding stability of protein-protein complexes
-
Dong F., and Zhou H.-X. Electrostatic contribution to the binding stability of protein-protein complexes. Proteins 65 (2006) 87-102
-
(2006)
Proteins
, vol.65
, pp. 87-102
-
-
Dong, F.1
Zhou, H.-X.2
-
10
-
-
3242886771
-
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
-
Dolinsky T.J., Nielsen J.E., McCammon J.A., and Baker N.A. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res. 32 (2004) W665-W667
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Dolinsky, T.J.1
Nielsen, J.E.2
McCammon, J.A.3
Baker, N.A.4
-
11
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell W.D., Cieplak P., Bayly C.I., Gould I.R., Merz Jr. K.M., Ferguson D.M., Spellmeyer D.C., Fox T., Caldwell J.W., and Kollman P.A. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117 (1995) 5179-5197
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
12
-
-
84986486656
-
A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation
-
Nicholls A., and Honig A. A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation. J. Comput. Chem. 12 (1991) 435-445
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 435-445
-
-
Nicholls, A.1
Honig, A.2
-
14
-
-
33947669453
-
Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies
-
Bertonati C., Honig B., and Alexov E. Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies. Biophys. J. 92 (2007) 1891-1899
-
(2007)
Biophys. J.
, vol.92
, pp. 1891-1899
-
-
Bertonati, C.1
Honig, B.2
Alexov, E.3
-
15
-
-
0032557503
-
Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar
-
Vijayakumar M., Wong K.-W., Schreiber G., Fersht A.R., Szabo A., and Zhou H.-X. Electrostatic enhancement of diffusion-controlled protein-protein association: comparison of theory and experiment on barnase and barstar. J. Mol. Biol. 278 (1998) 1015-1024
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 1015-1024
-
-
Vijayakumar, M.1
Wong, K.-W.2
Schreiber, G.3
Fersht, A.R.4
Szabo, A.5
Zhou, H.-X.6
-
16
-
-
4444227242
-
Electrostatic potential of nucleotide-free protein is sufficient for discrimination between adenine and guanine-specific binding sites
-
Basu G., Sivanesan D., Kawabata T., and Go N. Electrostatic potential of nucleotide-free protein is sufficient for discrimination between adenine and guanine-specific binding sites. J. Mol. Biol. 342 (2004) 1053-1066
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1053-1066
-
-
Basu, G.1
Sivanesan, D.2
Kawabata, T.3
Go, N.4
|