Analysis of chloroplast rpS16 intron sequences in Lemnaceae

Molecular Biology

Volumn 43, Issue 1, 2009, Pages 32-38

  Martirosyan, E V ^a   Ryzhova, N N ^a   Kochieva, E Z ^a   Skryabin, K G ^a  

^a INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

Duckweeds; Haplotype; Phylogeny; Plastid DNA; Polymorphism; RpS16

Indexed keywords

ARACEAE; LANDOLTIA PUNCTATA; LEMNA; LEMNA AEQUINOCTIALIS; LEMNA GIBBA; LEMNA MINOR; LEMNA TRISULCA; SPIRODELA; WOLFFIA ARRHIZA;

EID: 61349173210     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S0026893309010051     Document Type: Article

References (19)

1. D.H. Les D.J. Crawford 1999 Landoltia (Lemnaceae), a new genus of duckweeds Novon 9 530 533
2. R.A. Stockey G.L. Hoffman G.W. Rothwell 1997 The fossil monocot Limnobiophyllum l: Resolving the phylogeny of Lemnaceae Am. J. Botany 84 355 368
3. T. Sang D.J. Crawford T.F. Stuessy 1997 Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae) Am. J. Botany. 84 1120 1136
4. L. Gielly P. Taberlet 1994 The use of chloroplast DNA to resolve plant phylogenies: Noncoding versus rbcL sequences Mol. Biol. Evol. 11 769 777
5. M.B. Hamilton J.M. Braverman D.F. Soria-Hernanz 2003 Patterns and relative rates of nucleotide and insertion/ deletion evolution at six chloroplast intergenic regions in New World species of the Lecythidaceae Mol. Biol. Evol. 20 1710 1721
6. D.H. Les D.J. Crawford E. Landolt J.D. Gabel R.T. Kimball 2002 Phylogeny and systematics of Lemnaceae, the Duckweed family Syst. Botany. 27 221 240
7. B. Oxelman M. Liden D. Berglund 1997 Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae) Plant Syst. Evol. 206 393 410
8. S.K. Edwards C. Johonstone S.A. Thompson 1991 Simple and rapid method for the preparation of plant genomic DNA for PCR analysis Nucleic Acids Res. 19 1349
9. J. Shaw E.B. Lickey J.T. Beck S.B. Farmer W. Liu J. Miller K.C. Siripun C.T. Winder E.E. Schilling R.L. Small 2005 The tortoise and the hare: 2. Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis Am. J. Botany. 92 142 166
10. S. Kumar K. Tamura M. Nei 2004 MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163
11. N. Saitou M. Nei 1987 The neighbor-joining method: A new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 406 425
12. M. Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 111 120
13. C.L. Andersson J.H.E. Rova 1999 The rpS16 intron and the phylogeny of the Rubioideae (Rubiaceae) Plant Syst. Evol. 214 161 186
14. J. Lee T. Hymowitz 2001 A molecular phylogenetic study of subtribe Glycininae (Leguminosae) derived from the chloroplast DNA rps16 intron sequences Am. J. Botany. 88 2064 2073
15. G.W. Rothwell M.R. van Atta H.E. Ballard R.A. Stockey 2004 Molecular phylogenetic relationships among Lemnaceae and Araceae using the chloroplast trnL-trnF intergenic spacer Mol. Phyl. Evol. 30 378 385
16. Landolt E. 1986. The Family of Lemnaceae: A Monographic Study. Biosistematic Investigations in Family of Duckweeds (Lemnaceae). Zurich: Veroff. Geobot. Inst. ETH.
17. E.V. Martirosyan N.N. Ryzhova K.G. Skryabin E.Z. Kochieva 2008 RAPD analysis of genomic polymorphism in duckweeds (Lemnaceae) Genetika 44 417 422
18. Rieseberg L.H., Welch M.E. 2002. Gene transfer through introgressive hybridization: History, evolutionary significance, and phylogenetic consequences. In: Horizontal Gene Transfer, 2nd ed. Eds Syvanen M., Kado C. N.Y.: Chapman and Hall, pp. 193-210.
19. W.C. Jordan M.W. Courtney J.E. Neigel 1996 Low levels of intraspecific genetic variation at a rapidly evolving chloroplast DNA locus in North American duckweeds (Lemnaceae) Am. J. Bot. 83 430 439