메뉴 건너뛰기




Volumn 10, Issue SUPPL. 1, 2009, Pages

Advanced analysis and visualization of gene copy number and expression data

Author keywords

[No Author keywords available]

Indexed keywords

ADVANCED ANALYSIS; COPY NUMBER DATUM; EXPRESSION DATA; GENE COPY NUMBER; GENE EXPRESSION DATA; GENE EXPRESSION LEVELS; GENOMIC LOCATIONS; MATLAB TOOLBOXES;

EID: 60849113127     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-S1-S70     Document Type: Article
Times cited : (3)

References (18)
  • 1
    • 0034016185 scopus 로고    scopus 로고
    • Genome changes and gene expression in human solid tumors
    • 10.1093/carcin/21.3.443 10688864
    • Gray J Collins C Genome changes and gene expression in human solid tumors Carcinogenesis 2000, 21:443-452 10.1093/carcin/21.3.443 10688864
    • (2000) Carcinogenesis , vol.21 , pp. 443-452
    • Gray, J.1    Collins, C.2
  • 2
    • 0026495364 scopus 로고
    • Comparative genemic hybridization for molecular cytogenetic analysis of solid tumors
    • 10.1126/science.1359641 1359641
    • Kallioniemi A Kallioniemi O-P Sudar D Rutovitz D Gray J Waldman F Pinkel D Comparative genemic hybridization for molecular cytogenetic analysis of solid tumors Science 1992, 258:818-821 10.1126/science.1359641 1359641
    • (1992) Science , vol.258 , pp. 818-821
    • Kallioniemi, A.1    Kallioniemi, O.-P.2    Sudar, D.3    Rutovitz, D.4    Gray, J.5    Waldman, F.6    Pinkel, D.7
  • 5
    • 6944222706 scopus 로고    scopus 로고
    • High-resolution genomic and expression profiling reveals 105 putative amplification target genes in pancreatic cancer
    • 1550328 15548351 10.1593/neo.04130
    • Mahlamaki EH Kauraniemi P Monni O Wolf M Hautaniemi S Kallioniemi A High-resolution genomic and expression profiling reveals 105 putative amplification target genes in pancreatic cancer Neoplasia 2004, 6:432-439 1550328 15548351 10.1593/neo.04130
    • (2004) Neoplasia , vol.6 , pp. 432-439
    • Mahlamaki, E.H.1    Kauraniemi, P.2    Monni, O.3    Wolf, M.4    Hautaniemi, S.5    Kallioniemi, A.6
  • 6
    • 2442637585 scopus 로고    scopus 로고
    • High-Resolution Analysis of Gene Copy Number Alterations in Human Prostate Cancer Using CGH on cDNA Microarrays: Impact of Copy Number on Gene Expression
    • 1502104 15153336 10.1593/neo.03439
    • Wolf M Mousses S Hautaniemi S Karhu R Huusko P Allinen M Elkahloun A Monni O Chen Y Kallioniemi A Kallioniemi O-P High-Resolution Analysis of Gene Copy Number Alterations in Human Prostate Cancer Using CGH on cDNA Microarrays: Impact of Copy Number on Gene Expression Neoplasia 2004, 6:240-247 1502104 15153336 10.1593/neo.03439
    • (2004) Neoplasia , vol.6 , pp. 240-247
    • Wolf, M.1    Mousses, S.2    Hautaniemi, S.3    Karhu, R.4    Huusko, P.5    Allinen, M.6    Elkahloun, A.7    Monni, O.8    Chen, Y.9    Kallioniemi, A.10    Kallioniemi, O.-P.11
  • 8
    • 13244252321 scopus 로고    scopus 로고
    • M-CGH: Analysing microarray-based CGH experiments
    • 446184 15189572 10.1186/1471-2105-5-74
    • Wang J Meza-Zepeda LA Kresse SH Myklebost O M-CGH: Analysing microarray-based CGH experiments BMC Bioinformatics 2004, 5:74 446184 15189572 10.1186/1471-2105-5-74
    • (2004) BMC Bioinformatics , vol.5 , pp. 74
    • Wang, J.1    Meza-Zepeda, L.A.2    Kresse, S.H.3    Myklebost, O.4
  • 9
    • 9444223586 scopus 로고    scopus 로고
    • Breakpoint identification and smoothing of array comparative genomic hybridization data
    • 10.1093/bioinformatics/bth355 15201182
    • Jong K Marchiori E Vaart Van Der A Ylstra B Breakpoint identification and smoothing of array comparative genomic hybridization data Bioinformatics 2004, 20:3636-3637 10.1093/bioinformatics/bth355 15201182
    • (2004) Bioinformatics , vol.20 , pp. 3636-3637
    • Jong, K.1    Marchiori, E.2    Vaart Van Der, A.3    Ylstra, B.4
  • 12
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • 10.1093/biostatistics/kxh008 15475419
    • Olshen A Venkatraman ES Lucito R Wigler M Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 2004, 5:557-572 10.1093/biostatistics/kxh008 15475419
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 13
    • 22844435668 scopus 로고    scopus 로고
    • CGHPRO - A comprehensive data analysis tool for array CGH
    • 1274268 15807904 10.1186/1471-2105-6-85
    • Chen W Erdogan F Ropers H Lenzner S Ullmann R CGHPRO - A comprehensive data analysis tool for array CGH BMC Bioinformatics 2005, 6:85 1274268 15807904 10.1186/1471-2105-6-85
    • (2005) BMC Bioinformatics , vol.6 , pp. 85
    • Chen, W.1    Erdogan, F.2    Ropers, H.3    Lenzner, S.4    Ullmann, R.5
  • 14
    • 34547611743 scopus 로고    scopus 로고
    • ISACGH: A web-based environment for the analysis of Array CGH and gene expression which includes functional profiling
    • 1933149 17468499 10.1093/nar/gkm257
    • Conde L Montaner D Burguet-Castell J Tarraga J Medina I Al-Shahrour F Dopazo J ISACGH: A web-based environment for the analysis of Array CGH and gene expression which includes functional profiling Nucleic Acids Res 2007, 35:W81-85 1933149 17468499 10.1093/nar/gkm257
    • (2007) Nucleic Acids Res , vol.35
    • Conde, L.1    Montaner, D.2    Burguet-Castell, J.3    Tarraga, J.4    Medina, I.5    Al-Shahrour, F.6    Dopazo, J.7
  • 15
    • 33750587345 scopus 로고    scopus 로고
    • Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses
    • 10.1038/sj.onc.1209690 16715129
    • Järvinen A-K Autio R Haapa-Paananen S Wolf M Saarela M Grenman R Leivo I Kallioniemi O Mäkitie AA Monni O Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses Oncogene 2006, 25:6997-7008 10.1038/sj.onc.1209690 16715129
    • (2006) Oncogene , vol.25 , pp. 6997-7008
    • Järvinen, A.-K.1    Autio, R.2    Haapa-Paananen, S.3    Wolf, M.4    Saarela, M.5    Grenman, R.6    Leivo, I.7    Kallioniemi, O.8    Mäkitie, A.A.9    Monni, O.10
  • 16
    • 43049167326 scopus 로고    scopus 로고
    • High-Resolution Copy Number and Gene Expression Microarray Analyses of Head and Neck Squamous Cell Carcinoma Cell Lines of Tongue and Larynx
    • 10.1002/gcc.20551 18314910
    • Järvinen A-K Autio R Kilpinen S Saarela M Leivo I Grenman R Mäkitie AA Monni O High-Resolution Copy Number and Gene Expression Microarray Analyses of Head and Neck Squamous Cell Carcinoma Cell Lines of Tongue and Larynx Genes Chromosomes Cancer 2008, 47:500-509 10.1002/ gcc.20551 18314910
    • (2008) Genes Chromosomes Cancer , vol.47 , pp. 500-509
    • Järvinen, A.-K.1    Autio, R.2    Kilpinen, S.3    Saarela, M.4    Leivo, I.5    Grenman, R.6    Mäkitie, A.A.7    Monni, O.8
  • 17
    • 84874652915 scopus 로고    scopus 로고
    • CGH-Plotter
    • CGH-Plotter http://www.cs.tut.fi/~bsmg/download.html


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.