-
1
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
10.1038/ng1201-365 11726920
-
Brazma A Hingamp P Quackenbush J Sherlock G Spellman P Stoeckert C Aach J Ansorge W Ball CA Causton HC Gaasterland T Glenisson P Holstege FC Kim IF Markowitz V Matese JC Parkinson H Robinson A Sarkans U Schulze-Kremer S Stewart J Taylor R Vilo J Vingron M Minimum information about a microarray experiment (MIAME)-toward standards for microarray data Nat Genet 2001, 29:365-371. 10.1038/ng1201-365 11726920
-
(2001)
Nat Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
2
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
10.1038/35000501 10676951
-
Alizadeh AA Eisen MB Davis RE Ma C Lossos IS Rosenwald A Boldrick JC Sabet H Tran T Yu X Powell JI Yang L Marti GE Moore T Hudson J Jr Lu L Lewis DB Tibshirani R Sherlock G Chan WC Greiner TC Weisenburger DD Armitage JO Warnke R Levy R Wilson W Grever MR Byrd JC Botstein D Brown PO Staudt LM Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling Nature 2000, 403:503-511. 10.1038/35000501 10676951
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson Jr., J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
3
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
10.1056/NEJMoa021967 12490681
-
Vijver van de MJ He YD van't Veer LJ Dai H Hart AA Voskuil DW Schreiber GJ Peterse JL Roberts C Marton MJ Parrish M Atsma D Witteveen A Glas A Delahaye L Velde van der T Bartelink H Rodenhuis S Rutgers ET Friend SH Bernards R A gene-expression signature as a predictor of survival in breast cancer N Engl J Med 2002, 347:1999-2009. 10.1056/NEJMoa021967 12490681
-
(2002)
N Engl J Med
, vol.347
, pp. 1999-2009
-
-
Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
Parrish, M.11
Atsma, D.12
Witteveen, A.13
Glas, A.14
Delahaye, L.15
Velde, T.16
Bartelink, H.17
Rodenhuis, S.18
Rutgers, E.T.19
Friend, S.H.20
Bernards, R.21
more..
-
4
-
-
0033977307
-
Analysis of immune system gene expression in small rheumatoid arthritis biopsies using a combination of subtractive hybridization and high-density cDNA arrays
-
10.1016/S0022-1759(99)00126-X 10648863
-
Zanders ED Goulden MG Kennedy TC Kempsell KE Analysis of immune system gene expression in small rheumatoid arthritis biopsies using a combination of subtractive hybridization and high-density cDNA arrays J Immunol Methods 2000, 233:131-140. 10.1016/S0022-1759(99)00126-X 10648863
-
(2000)
J Immunol Methods
, vol.233
, pp. 131-140
-
-
Zanders, E.D.1
Goulden, M.G.2
Kennedy, T.C.3
Kempsell, K.E.4
-
5
-
-
19944362145
-
DNA microarray allows molecular profiling of rheumatoid arthritis and identification of pathophysiological targets
-
10.1038/sj.gene.6364132 15496955
-
Devauchelle V Marion S Cagnard N Mistou S Falgarone G Breban M Letourneur F Pitaval A Alibert O Lucchesi C Anract P Hamadouche M Ayral X Dougados M Gidrol X Fournier C Chiocchia G DNA microarray allows molecular profiling of rheumatoid arthritis and identification of pathophysiological targets Genes Immun 2004, 5:597-608. 10.1038/ sj.gene.6364132 15496955
-
(2004)
Genes Immun
, vol.5
, pp. 597-608
-
-
Devauchelle, V.1
Marion, S.2
Cagnard, N.3
Mistou, S.4
Falgarone, G.5
Breban, M.6
Letourneur, F.7
Pitaval, A.8
Alibert, O.9
Lucchesi, C.10
Anract, P.11
Hamadouche, M.12
Ayral, X.13
Dougados, M.14
Gidrol, X.15
Fournier, C.16
Chiocchia, G.17
-
6
-
-
34248584526
-
Identification of distinct gene expression profiles in the synovium of patients with systemic lupus erythematosus
-
10.1002/art.22578 17469140
-
Nzeusseu TA Galant C Theate I Maudoux AL Lories RJ Houssiau FA Lauwerys BR Identification of distinct gene expression profiles in the synovium of patients with systemic lupus erythematosus Arthritis Rheum 2007, 56:1579-1588. 10.1002/art.22578 17469140
-
(2007)
Arthritis Rheum
, vol.56
, pp. 1579-1588
-
-
Nzeusseu, T.A.1
Galant, C.2
Theate, I.3
Maudoux, A.L.4
Lories, R.J.5
Houssiau, F.A.6
Lauwerys, B.R.7
-
7
-
-
70350540689
-
Variability in synovial inflammation in rheumatoid arthritis investigated by microarray technology
-
1526587 16507157 10.1186/ar1903
-
Lindberg J Af KE Ulfgren AK Stark A Andersson T Nilsson P Klareskog L Lundeberg J Variability in synovial inflammation in rheumatoid arthritis investigated by microarray technology Arthritis Res Ther 2006, 8:R47. 1526587 16507157 10.1186/ar1903
-
(2006)
Arthritis Res Ther
, vol.8
-
-
Lindberg, J.1
Af, K.E.2
Ulfgren, A.K.3
Stark, A.4
Andersson, T.5
Nilsson, P.6
Klareskog, L.7
Lundeberg, J.8
-
8
-
-
0038151908
-
Discovery of distinctive gene expression profiles in rheumatoid synovium using cDNA microarray technology: Evidence for the existence of multiple pathways of tissue destruction and repair
-
10.1038/sj.gene.6363975 12700593
-
Pouw Kraan van der TC van Gaalen FA Huizinga TW Pieterman E Breedveld FC Verweij CL Discovery of distinctive gene expression profiles in rheumatoid synovium using cDNA microarray technology: Evidence for the existence of multiple pathways of tissue destruction and repair Genes Immun 2003, 4:187-196. 10.1038/sj.gene.6363975 12700593
-
(2003)
Genes Immun
, vol.4
, pp. 187-196
-
-
Pouw Kraan, T.C.1
van Gaalen, F.A.2
Huizinga, T.W.3
Pieterman, E.4
Breedveld, F.C.5
Verweij, C.L.6
-
9
-
-
0042655250
-
Rheumatoid arthritis is a heterogeneous disease: Evidence for differences in the activation of the STAT-1 pathway between rheumatoid tissues
-
10.1002/art.11096 12905466
-
Pouw Kraan van der TC van Gaalen FA Kasperkovitz PV Verbeet NL Smeets TJ Kraan MC Fero M Tak PP Huizinga TW Pieterman E Breedveld FC Alizadeh AA Verweij CL Rheumatoid arthritis is a heterogeneous disease: Evidence for differences in the activation of the STAT-1 pathway between rheumatoid tissues Arthritis Rheum 2003, 48:2132-2145. 10.1002/art.11096 12905466
-
(2003)
Arthritis Rheum
, vol.48
, pp. 2132-2145
-
-
Pouw Kraan, T.C.1
van Gaalen, F.A.2
Kasperkovitz, P.V.3
Verbeet, N.L.4
Smeets, T.J.5
Kraan, M.C.6
Fero, M.7
Tak, P.P.8
Huizinga, T.W.9
Pieterman, E.10
Breedveld, F.C.11
Alizadeh, A.A.12
Verweij, C.L.13
-
10
-
-
1342322752
-
Activation of the STAT1 pathway in rheumatoid arthritis
-
1754903 14962955 10.1136/ard.2003.013276
-
Kasperkovitz PV Verbeet NL Smeets TJ van Rietschoten JG Kraan MC Pouw Kraan van der TC Tak PP Verweij CL Activation of the STAT1 pathway in rheumatoid arthritis Ann Rheum Dis 2004, 63:233-239. 1754903 14962955 10.1136/ard.2003.013276
-
(2004)
Ann Rheum Dis
, vol.63
, pp. 233-239
-
-
Kasperkovitz, P.V.1
Verbeet, N.L.2
Smeets, T.J.3
van Rietschoten, J.G.4
Kraan, M.C.5
Pouw Kraan, T.C.6
Tak, P.P.7
Verweij, C.L.8
-
11
-
-
0038047126
-
From transcriptome to proteome: Differentially expressed proteins identified in synovial tissue of patients suffering from rheumatoid arthritis and osteoarthritis by an initial screen with a panel of 791 antibodies
-
10.1002/pmic.200300412 12833524
-
Lorenz P Ruschpler P Koczan D Stiehl P Thiesen HJ From transcriptome to proteome: Differentially expressed proteins identified in synovial tissue of patients suffering from rheumatoid arthritis and osteoarthritis by an initial screen with a panel of 791 antibodies Proteomics 2003, 3:991-1002. 10.1002/pmic.200300412 12833524
-
(2003)
Proteomics
, vol.3
, pp. 991-1002
-
-
Lorenz, P.1
Ruschpler, P.2
Koczan, D.3
Stiehl, P.4
Thiesen, H.J.5
-
12
-
-
3042844142
-
Characterization of heterogeneity in the molecular pathogenesis of lupus nephritis from transcriptional profiles of laser-captured glomeruli
-
420500 15199407
-
Peterson KS Huang JF Zhu J D'Agati V Liu X Miller N Erlander MG Jackson MR Winchester RJ Characterization of heterogeneity in the molecular pathogenesis of lupus nephritis from transcriptional profiles of laser-captured glomeruli J Clin Invest 2004, 113:1722-1733. 420500 15199407
-
(2004)
J Clin Invest
, vol.113
, pp. 1722-1733
-
-
Peterson, K.S.1
Huang, J.F.2
Zhu, J.3
D'Agati, V.4
Liu, X.5
Miller, N.6
Erlander, M.G.7
Jackson, M.R.8
Winchester, R.J.9
-
13
-
-
18644364840
-
Gene expression profiling of minor salivary glands clearly distinguishes primary Sjogren's syndrome patients from healthy control subjects
-
10.1002/art.21006 15880807
-
Hjelmervik TO Petersen K Jonassen I Jonsson R Bolstad AI Gene expression profiling of minor salivary glands clearly distinguishes primary Sjogren's syndrome patients from healthy control subjects Arthritis Rheum 2005, 52:1534-1544. 10.1002/art.21006 15880807
-
(2005)
Arthritis Rheum
, vol.52
, pp. 1534-1544
-
-
Hjelmervik, T.O.1
Petersen, K.2
Jonassen, I.3
Jonsson, R.4
Bolstad, A.I.5
-
15
-
-
34547726636
-
Inflammation and ectopic lymphoid structures in rheumatoid arthritis synovial tissues dissected by genomics technology: Identification of the interleukin-7 signaling pathway in tissues with lymphoid neogenesis
-
10.1002/art.22748 17665400
-
Timmer TC Baltus B Vondenhoff M Huizinga TW Tak PP Verweij CL Mebius RE Pouw Kraan van der TC Inflammation and ectopic lymphoid structures in rheumatoid arthritis synovial tissues dissected by genomics technology: identification of the interleukin-7 signaling pathway in tissues with lymphoid neogenesis Arthritis Rheum 2007, 56:2492-2502. 10.1002/ art.22748 17665400
-
(2007)
Arthritis Rheum
, vol.56
, pp. 2492-2502
-
-
Timmer, T.C.1
Baltus, B.2
Vondenhoff, M.3
Huizinga, T.W.4
Tak, P.P.5
Verweij, C.L.6
Mebius, R.E.7
Pouw Kraan, T.C.8
-
16
-
-
29344434125
-
Characterization of histopathology and gene-expression profiles of synovitis in early rheumatoid arthritis using targeted biopsy specimens
-
1175033 15987484 10.1186/ar1751
-
Tsubaki T Arita N Kawakami T Shiratsuchi T Yamamoto H Takubo N Yamada K Nakata S Yamamoto S Nose M Characterization of histopathology and gene-expression profiles of synovitis in early rheumatoid arthritis using targeted biopsy specimens Arthritis Res Ther 2005, 7:R825-R836. 1175033 15987484 10.1186/ar1751
-
(2005)
Arthritis Res Ther
, vol.7
-
-
Tsubaki, T.1
Arita, N.2
Kawakami, T.3
Shiratsuchi, T.4
Yamamoto, H.5
Takubo, N.6
Yamada, K.7
Nakata, S.8
Yamamoto, S.9
Nose, M.10
-
17
-
-
33644530664
-
Activation of IFN pathways and plasmacytoid dendritic cell recruitment in target organs of primary Sjogren's syndrome
-
1413808 16477017 10.1073/pnas.0510837103
-
Gottenberg JE Cagnard N Lucchesi C Letourneur F Mistou S Lazure T Jacques S Ba N Ittah M Lepajolec C Labetoulle M Ardizzone M Sibilia J Fournier C Chiocchia G Mariette X Activation of IFN pathways and plasmacytoid dendritic cell recruitment in target organs of primary Sjogren's syndrome Proc Natl Acad Sci USA 2006, 103:2770-2775. 1413808 16477017 10.1073/pnas.0510837103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2770-2775
-
-
Gottenberg, J.E.1
Cagnard, N.2
Lucchesi, C.3
Letourneur, F.4
Mistou, S.5
Lazure, T.6
Jacques, S.7
Ba, N.8
Ittah, M.9
Lepajolec, C.10
Labetoulle, M.11
Ardizzone, M.12
Sibilia, J.13
Fournier, C.14
Chiocchia, G.15
Mariette, X.16
-
18
-
-
35548992599
-
Salivary proteomic and genomic biomarkers for primary Sjogren's syndrome
-
10.1002/art.22954 17968930
-
Hu S Wang J Meijer J Ieong S Xie Y Yu T Zhou H Henry S Vissink A Pijpe J Kallenberg C Elashoff D Loo JA Wong DT Salivary proteomic and genomic biomarkers for primary Sjogren's syndrome Arthritis Rheum 2007, 56:3588-3600. 10.1002/art.22954 17968930
-
(2007)
Arthritis Rheum
, vol.56
, pp. 3588-3600
-
-
Hu, S.1
Wang, J.2
Meijer, J.3
Ieong, S.4
Xie, Y.5
Yu, T.6
Zhou, H.7
Henry, S.8
Vissink, A.9
Pijpe, J.10
Kallenberg, C.11
Elashoff, D.12
Loo, J.A.13
Wong, D.T.14
-
19
-
-
33845600333
-
A novel autoantigen to differentiate limited cutaneous systemic sclerosis from diffuse cutaneous systemic sclerosis: The interferon-inducible gene IFI16
-
10.1002/art.22266 17133607
-
Mondini M Vidali M De Andrea M Azzimonti B Airò P D'Ambrosio R Riboldi P Meroni PL Albano E Shoenfeld Y Gariglio M Landolfo S A novel autoantigen to differentiate limited cutaneous systemic sclerosis from diffuse cutaneous systemic sclerosis: The interferon-inducible gene IFI16 Arthritis Rheum 2006, 54:3939-3944. 10.1002/art.22266 17133607
-
(2006)
Arthritis Rheum
, vol.54
, pp. 3939-3944
-
-
Mondini, M.1
Vidali, M.2
De Andrea, M.3
Azzimonti, B.4
Airò, P.5
D'Ambrosio, R.6
Riboldi, P.7
Meroni, P.L.8
Albano, E.9
Shoenfeld, Y.10
Gariglio, M.11
Landolfo, S.12
-
20
-
-
0036790977
-
Diversity, topographic differentiation, and positional memory in human fibroblasts
-
130553 12297622 10.1073/pnas.162488599
-
Chang HY Chi JT Dudoit S Bondre C van de RM Botstein D Brown PO Diversity, topographic differentiation, and positional memory in human fibroblasts Proc Natl Acad Sci USA 2002, 99:12877-12882. 130553 12297622 10.1073/pnas.162488599
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12877-12882
-
-
Chang, H.Y.1
Chi, J.T.2
Dudoit, S.3
Bondre, C.4
van de, R.M.5
Botstein, D.6
Brown, P.O.7
-
21
-
-
0031201054
-
Fibroblasts as sentinel cells. Synthesis of chemokines and regulation of inflammation
-
1858004 9250144
-
Smith RS Smith TJ Blieden TM Phipps RP Fibroblasts as sentinel cells. Synthesis of chemokines and regulation of inflammation Am J Pathol 1997, 151:317-322. 1858004 9250144
-
(1997)
Am J Pathol
, vol.151
, pp. 317-322
-
-
Smith, R.S.1
Smith, T.J.2
Blieden, T.M.3
Phipps, R.P.4
-
22
-
-
0342700182
-
Chemokines and CD40 expression in human fibroblasts
-
10.1002/1521-4141(200003)30:3<914::AID-IMMU914>3.0.CO;2-D 10741409
-
Brouty-Boye D Pottin-Clemenceau C Doucet C Jasmin C Azzarone B Chemokines and CD40 expression in human fibroblasts Eur J Immunol 2000, 30:914-919. 10.1002/ 1521-4141(200003)30:3<914::AID-IMMU914>3.0.CO;2-D 10741409
-
(2000)
Eur J Immunol
, vol.30
, pp. 914-919
-
-
Brouty-Boye, D.1
Pottin-Clemenceau, C.2
Doucet, C.3
Jasmin, C.4
Azzarone, B.5
-
23
-
-
0031756118
-
Novel roles for chemokines and fibroblasts in interstitial fibrosis
-
10.1046/j.1523-1755.1998.00176.x 9853282
-
Hogaboam CM Steinhauser ML Chensue SW Kunkel SL Novel roles for chemokines and fibroblasts in interstitial fibrosis Kidney Int 1998, 54:2152-2159. 10.1046/j.1523-1755.1998.00176.x 9853282
-
(1998)
Kidney Int
, vol.54
, pp. 2152-2159
-
-
Hogaboam, C.M.1
Steinhauser, M.L.2
Chensue, S.W.3
Kunkel, S.L.4
-
24
-
-
0036289709
-
Gene expression profile analysis of rheumatoid synovial fibroblast cultures revealing the overexpression of genes responsible for tumor-like growth of rheumatoid synovium
-
10.1016/S0006-291X(02)00608-3 12074593
-
Watanabe N Ando K Yoshida S Inuzuka S Kobayashi M Matsui N Okamoto T Gene expression profile analysis of rheumatoid synovial fibroblast cultures revealing the overexpression of genes responsible for tumor-like growth of rheumatoid synovium Biochem Biophys Res Commun 2002, 294:1121-1129. 10.1016/S0006-291X(02)00608-3 12074593
-
(2002)
Biochem Biophys Res Commun
, vol.294
, pp. 1121-1129
-
-
Watanabe, N.1
Ando, K.2
Yoshida, S.3
Inuzuka, S.4
Kobayashi, M.5
Matsui, N.6
Okamoto, T.7
-
25
-
-
0142039051
-
Identification of Naf1/ABIN-1 among TNF-alpha-induced expressed genes in human synoviocytes using oligonucleotide microarrays
-
10.1016/S0014-5793(03)00823-8 12965196
-
Gallagher J Howlin J McCarthy C Murphy EP Bresnihan B FitzGerald O Godson C Brady HR Martin F Identification of Naf1/ABIN-1 among TNF-alpha-induced expressed genes in human synoviocytes using oligonucleotide microarrays FEBS Lett 2003, 551:8-12. 10.1016/ S0014-5793(03)00823-8 12965196
-
(2003)
FEBS Lett
, vol.551
, pp. 8-12
-
-
Gallagher, J.1
Howlin, J.2
McCarthy, C.3
Murphy, E.P.4
Bresnihan, B.5
FitzGerald, O.6
Godson, C.7
Brady, H.R.8
Martin, F.9
-
26
-
-
15244352974
-
Overlapping gene expression profiles in rheumatoid fibroblast-like synoviocytes induced by the proinflammatory cytokines interleukin-1 beta and tumor necrosis factor
-
10.1007/s00011-004-1315-8 15723199
-
Taberner M Scott KF Weininger L Mackay CR Rolph MS Overlapping gene expression profiles in rheumatoid fibroblast-like synoviocytes induced by the proinflammatory cytokines interleukin-1 beta and tumor necrosis factor Inflamm Res 2005, 54:10-16. 10.1007/s00011-004-1315-8 15723199
-
(2005)
Inflamm Res
, vol.54
, pp. 10-16
-
-
Taberner, M.1
Scott, K.F.2
Weininger, L.3
Mackay, C.R.4
Rolph, M.S.5
-
27
-
-
13444250902
-
Fibroblast-like synoviocytes derived from patients with rheumatoid arthritis show the imprint of synovial tissue heterogeneity: Evidence of a link between an increased myofibroblast-like phenotype and high-inflammation synovitis
-
10.1002/art.20811 15692990
-
Kasperkovitz PV Timmer TC Smeets TJ Verbeet NL Tak PP van Baarsen LG Baltus B Huizinga TW Pieterman E Fero M Firestein GS Pouw Kraan van der TC Verweij CL Fibroblast-like synoviocytes derived from patients with rheumatoid arthritis show the imprint of synovial tissue heterogeneity: evidence of a link between an increased myofibroblast-like phenotype and high-inflammation synovitis Arthritis Rheum 2005, 52:430-441. 10.1002/ art.20811 15692990
-
(2005)
Arthritis Rheum
, vol.52
, pp. 430-441
-
-
Kasperkovitz, P.V.1
Timmer, T.C.2
Smeets, T.J.3
Verbeet, N.L.4
Tak, P.P.5
van Baarsen, L.G.6
Baltus, B.7
Huizinga, T.W.8
Pieterman, E.9
Fero, M.10
Firestein, G.S.11
Pouw Kraan, T.C.12
Verweij, C.L.13
-
28
-
-
55449104383
-
Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis
-
1270006 16254600 10.1371/journal.pgen.0010048
-
Aidinis V Carninci P Armaka M Witke W Harokopos V Pavelka N Koczan D Argyropoulos C Thwin MM Möller S Waki K Gopalakrishnakone P Ricciardi-Castagnoli P Thiesen HJ Hayashizaki Y Kollias G Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis PLoS Genet 2005, 1:e48. 1270006 16254600 10.1371/journal.pgen.0010048
-
(2005)
PLoS Genet
, vol.1
-
-
Aidinis, V.1
Carninci, P.2
Armaka, M.3
Witke, W.4
Harokopos, V.5
Pavelka, N.6
Koczan, D.7
Argyropoulos, C.8
Thwin, M.M.9
Möller, S.10
Waki, K.11
Gopalakrishnakone, P.12
Ricciardi-Castagnoli, P.13
Thiesen, H.J.14
Hayashizaki, Y.15
Kollias, G.16
-
29
-
-
0142059804
-
Systemic and cell type-specific gene expression patterns in scleroderma skin
-
218756 14530402 10.1073/pnas.1635114100
-
Whitfield ML Finlay DR Murray JI Troyanskaya OG Chi JT Pergamenschikov A McCalmont TH Brown PO Botstein D Connolly MK Systemic and cell type-specific gene expression patterns in scleroderma skin Proc Natl Acad Sci USA 2003, 100:12319-12324. 218756 14530402 10.1073/ pnas.1635114100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12319-12324
-
-
Whitfield, M.L.1
Finlay, D.R.2
Murray, J.I.3
Troyanskaya, O.G.4
Chi, J.T.5
Pergamenschikov, A.6
McCalmont, T.H.7
Brown, P.O.8
Botstein, D.9
Connolly, M.K.10
-
30
-
-
20144366026
-
Classification analysis of the transcriptosome of nonlesional cultured dermal fibroblasts from systemic sclerosis patients with early disease
-
10.1002/art.20871 15751056
-
Tan FK Hildebrand BA Lester MS Stivers DN Pounds S Zhou X Wallis DD Milewicz DM Reveille JD Mayes MD Jin L Arnett FC Jr Classification analysis of the transcriptosome of nonlesional cultured dermal fibroblasts from systemic sclerosis patients with early disease Arthritis Rheum 2005, 52:865-876. 10.1002/art.20871 15751056
-
(2005)
Arthritis Rheum
, vol.52
, pp. 865-876
-
-
Tan, F.K.1
Hildebrand, B.A.2
Lester, M.S.3
Stivers, D.N.4
Pounds, S.5
Zhou, X.6
Wallis, D.D.7
Milewicz, D.M.8
Reveille, J.D.9
Mayes, M.D.10
Jin, L.11
Arnett Jr., F.C.12
-
31
-
-
26844493324
-
Monozygotic twins clinically discordant for scleroderma show concordance for fibroblast gene expression profiles
-
10.1002/art.21355 16200604
-
Zhou X Tan FK Xiong M Arnett FC Feghali-Bostwick CA Monozygotic twins clinically discordant for scleroderma show concordance for fibroblast gene expression profiles Arthritis Rheum 2005, 52:3305-3314. 10.1002/ art.21355 16200604
-
(2005)
Arthritis Rheum
, vol.52
, pp. 3305-3314
-
-
Zhou, X.1
Tan, F.K.2
Xiong, M.3
Arnett, F.C.4
Feghali-Bostwick, C.A.5
-
32
-
-
0037451167
-
Interferon and granulopoiesis signatures in systemic lupus erythematosus blood
-
2193846 12642603 10.1084/jem.20021553
-
Bennett L Palucka AK Arce E Cantrell V Borvak J Banchereau J Pascual V Interferon and granulopoiesis signatures in systemic lupus erythematosus blood J Exp Med 2003, 197:711-723. 2193846 12642603 10.1084/jem.20021553
-
(2003)
J Exp Med
, vol.197
, pp. 711-723
-
-
Bennett, L.1
Palucka, A.K.2
Arce, E.3
Cantrell, V.4
Borvak, J.5
Banchereau, J.6
Pascual, V.7
-
33
-
-
0344492212
-
Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus
-
151388 12604793 10.1073/pnas.0337679100
-
Baechler EC Batliwalla FM Karypis G Gaffney PM Ortmann WA Espe KJ Shark KB Grande WJ Hughes KM Kapur V Gregersen PK Behrens TW Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus Proc Natl Acad Sci USA 2003, 100:2610-2615. 151388 12604793 10.1073/pnas.0337679100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 2610-2615
-
-
Baechler, E.C.1
Batliwalla, F.M.2
Karypis, G.3
Gaffney, P.M.4
Ortmann, W.A.5
Espe, K.J.6
Shark, K.B.7
Grande, W.J.8
Hughes, K.M.9
Kapur, V.10
Gregersen, P.K.11
Behrens, T.W.12
-
34
-
-
47949089923
-
Association of a gene expression profile from whole blood with disease activity in systemic lupus erythaematosus
-
10.1136/ard.2007.074765 18063674
-
Nikpour M Dempsey AA Urowitz MB Gladman DD Barnes DA Association of a gene expression profile from whole blood with disease activity in systemic lupus erythaematosus Ann Rheum Dis 2008, 67:1069-1075. 10.1136/ ard.2007.074765 18063674
-
(2008)
Ann Rheum Dis
, vol.67
, pp. 1069-1075
-
-
Nikpour, M.1
Dempsey, A.A.2
Urowitz, M.B.3
Gladman, D.D.4
Barnes, D.A.5
-
35
-
-
2442676277
-
Blood cell gene expression profiling in rheumatoid arthritis. Discriminative genes and effect of rheumatoid factor
-
10.1016/j.imlet.2004.03.018 15158620
-
Bovin LF Rieneck K Workman C Nielsen H Sorensen SF Skjodt H Florescu A Brunak S Bendtzen K Blood cell gene expression profiling in rheumatoid arthritis. Discriminative genes and effect of rheumatoid factor Immunol Lett 2004, 93:217-226. 10.1016/j.imlet.2004.03.018 15158620
-
(2004)
Immunol Lett
, vol.93
, pp. 217-226
-
-
Bovin, L.F.1
Rieneck, K.2
Workman, C.3
Nielsen, H.4
Sorensen, S.F.5
Skjodt, H.6
Florescu, A.7
Brunak, S.8
Bendtzen, K.9
-
36
-
-
30744449552
-
Peripheral blood gene expression profiling in rheumatoid arthritis
-
10.1038/sj.gene.6364209 15973463
-
Batliwalla FM Baechler EC Xiao X Li W Balasubramanian S Khalili H Damle A Ortmann WA Perrone A Kantor AB Gulko PS Kern M Furie R Behrens TW Gregersen PK Peripheral blood gene expression profiling in rheumatoid arthritis Genes Immun 2005, 6:388-397. 10.1038/sj.gene.6364209 15973463
-
(2005)
Genes Immun
, vol.6
, pp. 388-397
-
-
Batliwalla, F.M.1
Baechler, E.C.2
Xiao, X.3
Li, W.4
Balasubramanian, S.5
Khalili, H.6
Damle, A.7
Ortmann, W.A.8
Perrone, A.9
Kantor, A.B.10
Gulko, P.S.11
Kern, M.12
Furie, R.13
Behrens, T.W.14
Gregersen, P.K.15
-
37
-
-
33751402128
-
A genome-scale assessment of peripheral blood B-cell molecular homeostasis in patients with rheumatoid arthritis
-
10.1093/rheumatology/kel095 16638801
-
Szodoray P Alex P Frank MB Turner M Turner S Knowlton N Cadwell C Dozmorov I Tang Y Wilson PC Jonsson R Centola M A genome-scale assessment of peripheral blood B-cell molecular homeostasis in patients with rheumatoid arthritis Rheumatology (Oxford) 2006, 45:1466-1476. 10.1093/rheumatology/kel095 16638801
-
(2006)
Rheumatology (Oxford)
, vol.45
, pp. 1466-1476
-
-
Szodoray, P.1
Alex, P.2
Frank, M.B.3
Turner, M.4
Turner, S.5
Knowlton, N.6
Cadwell, C.7
Dozmorov, I.8
Tang, Y.9
Wilson, P.C.10
Jonsson, R.11
Centola, M.12
-
38
-
-
2942548838
-
A gene expression signature for recent onset rheumatoid arthritis in peripheral blood mononuclear cells
-
1754808 15479887 10.1136/ard.2003.017194
-
Olsen N Sokka T Seehorn CL Kraft B Maas K Moore J Aune TM A gene expression signature for recent onset rheumatoid arthritis in peripheral blood mononuclear cells Ann Rheum Dis 2004, 63:1387-1392. 1754808 15479887 10.1136/ard.2003.017194
-
(2004)
Ann Rheum Dis
, vol.63
, pp. 1387-1392
-
-
Olsen, N.1
Sokka, T.2
Seehorn, C.L.3
Kraft, B.4
Maas, K.5
Moore, J.6
Aune, T.M.7
-
39
-
-
34249712937
-
Rheumatoid arthritis subtypes identified by genomic profiling of peripheral blood cells: Assignment of a type I interferon signature in a subpopulation of patients
-
10.1136/ard.2006.063412 17223656
-
Pouw Kraan van der TC Wijbrandts CA van Baarsen LG Voskuyl AE Rustenburg F Baggen JM Ibrahim SM Fero M Dijkmans BA Tak PP Verweij CL Rheumatoid arthritis subtypes identified by genomic profiling of peripheral blood cells: Assignment of a type I interferon signature in a subpopulation of patients Ann Rheum Dis 2007, 66:1008-1014. 10.1136/ard.2006.063412 17223656
-
(2007)
Ann Rheum Dis
, vol.66
, pp. 1008-1014
-
-
Pouw Kraan, T.C.1
Wijbrandts, C.A.2
van Baarsen, L.G.3
Voskuyl, A.E.4
Rustenburg, F.5
Baggen, J.M.6
Ibrahim, S.M.7
Fero, M.8
Dijkmans, B.A.9
Tak, P.P.10
Verweij, C.L.11
-
40
-
-
38549167507
-
Expression of a pathogen-response program in peripheral blood cells defines a subgroup of rheumatoid arthritis patients
-
10.1038/sj.gene.6364438 17928867
-
Pouw Kraan van der TC van Baarsen LG Wijbrandts CA Voskuyl AE Rustenburg F Baggen JM Dijkmans BA Tak PP Verweij CL Expression of a pathogen-response program in peripheral blood cells defines a subgroup of rheumatoid arthritis patients Genes Immun 2008, 9:16-22. 10.1038/ sj.gene.6364438 17928867
-
(2008)
Genes Immun
, vol.9
, pp. 16-22
-
-
Pouw Kraan, T.C.1
van Baarsen, L.G.2
Wijbrandts, C.A.3
Voskuyl, A.E.4
Rustenburg, F.5
Baggen, J.M.6
Dijkmans, B.A.7
Tak, P.P.8
Verweij, C.L.9
-
41
-
-
60749099515
-
Altered innate immune response in a subgroup of individuals at risk for rheumatoid arthritis
-
[abstract 1206]
-
van Baarsen EGM Bos WH Rustenburg F Pouw Kraan van der TCTM Wolbink GJ Horst-Bruinsma van der IE Dijkmans BAC van Schaardenburg D Verweij CL Altered innate immune response in a subgroup of individuals at risk for rheumatoid arthritis [abstract 1206] Arthritis Rheum 2008, 58:S616.
-
(2008)
Arthritis Rheum
, vol.58
-
-
van Baarsen, E.G.M.1
Bos, W.H.2
Rustenburg, F.3
Pouw Kraan, T.C.T.M.4
Wolbink, G.J.5
Horst-Bruinsma, I.E.6
Dijkmans, B.A.C.7
van Schaardenburg, D.8
Verweij, C.L.9
-
42
-
-
33745625865
-
Signatures of differentially regulated interferon gene expression and vasculotrophism in the peripheral blood cells of systemic sclerosis patients
-
10.1093/rheumatology/kei244 16418202
-
Tan FK Zhou X Mayes MD Gourh P Guo X Marcum C Jin L Arnett FC Jr Signatures of differentially regulated interferon gene expression and vasculotrophism in the peripheral blood cells of systemic sclerosis patients Rheumatology (Oxford) 2006, 45:694-702. 10.1093/rheumatology/ kei244 16418202
-
(2006)
Rheumatology (Oxford)
, vol.45
, pp. 694-702
-
-
Tan, F.K.1
Zhou, X.2
Mayes, M.D.3
Gourh, P.4
Guo, X.5
Marcum, C.6
Jin, L.7
Arnett Jr., F.C.8
-
43
-
-
33947154329
-
A macrophage marker, Siglec-1, is increased on circulating monocytes in patients with systemic sclerosis and induced by type I interferons and toll-like receptor agonists
-
10.1002/art.22382 17328080
-
York MR Nagai T Mangini AJ Lemaire R van Seventer JM Lafyatis R A macrophage marker, Siglec-1, is increased on circulating monocytes in patients with systemic sclerosis and induced by type I interferons and toll-like receptor agonists Arthritis Rheum 2007, 56:1010-1020. 10.1002/ art.22382 17328080
-
(2007)
Arthritis Rheum
, vol.56
, pp. 1010-1020
-
-
York, M.R.1
Nagai, T.2
Mangini, A.J.3
Lemaire, R.4
van Seventer, J.M.5
Lafyatis, R.6
-
44
-
-
67349269613
-
Molecular subtypes of systemic sclerosis in association with anti-centromer antibodies and digital ulcers
-
19129850
-
Bos CL van Baarsen LGM Timmer TCG Basoski NM Rustenburg F Baggen JMC Thiesen HJ Dijkmans BAC Pouw Kraan van der TCTM Voskuyl AE Verweij CL Molecular subtypes of systemic sclerosis in association with anti-centromer antibodies and digital ulcers Genes Immun 2009, 19129850.
-
(2009)
Genes Immun
-
-
Bos, C.L.1
van Baarsen, L.G.M.2
Timmer, T.C.G.3
Basoski, N.M.4
Rustenburg, F.5
Baggen, J.M.C.6
Thiesen, H.J.7
Dijkmans, B.A.C.8
Pouw Kraan, T.C.T.M.9
Voskuyl, A.E.10
Verweij, C.L.11
-
45
-
-
34548436508
-
Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade
-
2118700 17724127
-
Allantaz F Chaussabel D Stichweh D Bennett L Allman W Mejias A Ardura M Chung W Wise C Palucka K Ramilo O Punaro M Banchereau J Pascual V Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade J Exp Med 2007, 204:2131-2144. 2118700 17724127
-
(2007)
J Exp Med
, vol.204
, pp. 2131-2144
-
-
Allantaz, F.1
Chaussabel, D.2
Stichweh, D.3
Bennett, L.4
Allman, W.5
Mejias, A.6
Ardura, M.7
Chung, W.8
Wise, C.9
Palucka, K.10
Ramilo, O.11
Punaro, M.12
Banchereau, J.13
Pascual, V.14
-
46
-
-
33748447541
-
Type I interferon in systemic lupus erythematosus and other autoimmune diseases
-
10.1016/j.immuni.2006.08.010 16979570
-
Banchereau J Pascual V Type I interferon in systemic lupus erythematosus and other autoimmune diseases Immunity 2006, 25:383-392. 10.1016/ j.immuni.2006.08.010 16979570
-
(2006)
Immunity
, vol.25
, pp. 383-392
-
-
Banchereau, J.1
Pascual, V.2
-
47
-
-
19744363586
-
Shared gene expression profiles in individuals with autoimmune disease and unaffected first-degree relatives of individuals with autoimmune disease
-
10.1093/hmg/ddi141 15814587
-
Maas K Chen H Shyr Y Olsen NJ Aune T Shared gene expression profiles in individuals with autoimmune disease and unaffected first-degree relatives of individuals with autoimmune disease Hum Mol Genet 2005, 14:1305-1314. 10.1093/hmg/ddi141 15814587
-
(2005)
Hum Mol Genet
, vol.14
, pp. 1305-1314
-
-
Maas, K.1
Chen, H.2
Shyr, Y.3
Olsen, N.J.4
Aune, T.5
-
49
-
-
0033524159
-
Infliximab (chimeric anti-tumour necrosis factor alpha monoclonal antibody) versus placebo in rheumatoid arthritis patients receiving concomitant methotrexate: A randomised phase III trial
-
10.1016/S0140-6736(99)05246-0 10622295
-
Maini R St Clair EW Breedveld F Furst D Kalden J Weisman M Smolen J Emery P Harriman G Feldmann M Lipsky P Infliximab (chimeric anti-tumour necrosis factor alpha monoclonal antibody) versus placebo in rheumatoid arthritis patients receiving concomitant methotrexate: A randomised phase III trial Lancet 1999, 354:1932-1939. 10.1016/ S0140-6736(99)05246-0 10622295
-
(1999)
Lancet
, vol.354
, pp. 1932-1939
-
-
Maini, R.1
St Clair, E.W.2
Breedveld, F.3
Furst, D.4
Kalden, J.5
Weisman, M.6
Smolen, J.7
Emery, P.8
Harriman, G.9
Feldmann, M.10
Lipsky, P.11
-
51
-
-
43249100859
-
Gene profiling in white blood cells predicts infliximab responsiveness in rheumatoid arthritis
-
1779405 16817978 10.1186/ar1924
-
Lequerré T Gauthier-Jauneau AC Bansard C Derambure C Hiron M Vittecoq O Daveau M Mejjad O Daragon A Tron F Le Loët X Salier JP Gene profiling in white blood cells predicts infliximab responsiveness in rheumatoid arthritis Arthritis Res Ther 2006, 8:R105. 1779405 16817978 10.1186/ar1924
-
(2006)
Arthritis Res Ther
, vol.8
-
-
Lequerré, T.1
Gauthier-Jauneau, A.C.2
Bansard, C.3
Derambure, C.4
Hiron, M.5
Vittecoq, O.6
Daveau, M.7
Mejjad, O.8
Daragon, A.9
Tron, F.10
Le Loët, X.11
Salier, J.P.12
-
52
-
-
44449110026
-
Molecular discrimination of responders and non-responders to anti-TNFalpha therapy in rheumatoid arthritis by etanercept
-
2483439 18454843
-
Koczan D Drynda S Hecker M Drynda A Guthke R Kekow J Thiesen HJ Molecular discrimination of responders and non-responders to anti-TNFalpha therapy in rheumatoid arthritis by etanercept Arthritis Res Ther 2008, 10:R50. 2483439 18454843
-
(2008)
Arthritis Res Ther
, vol.10
-
-
Koczan, D.1
Drynda, S.2
Hecker, M.3
Drynda, A.4
Guthke, R.5
Kekow, J.6
Thiesen, H.J.7
-
54
-
-
41849115276
-
Responsiveness to anti-tumour necrosis factor alpha therapy is related to pre-treatment tissue inflammation levels in rheumatoid arthritis patients
-
10.1136/ard.2007.081950 18042642
-
Pouw Kraan van der TC Wijbrandts CA van Baarsen LG Rustenburg F Baggen JM Verweij CL Tak P Responsiveness to anti-tumour necrosis factor alpha therapy is related to pre-treatment tissue inflammation levels in rheumatoid arthritis patients Ann Rheum Dis 2008, 67:563-566. 10.1136/ ard.2007.081950 18042642
-
(2008)
Ann Rheum Dis
, vol.67
, pp. 563-566
-
-
Pouw Kraan, T.C.1
Wijbrandts, C.A.2
van Baarsen, L.G.3
Rustenburg, F.4
Baggen, J.M.5
Verweij, C.L.6
Tak, P.7
-
56
-
-
0032828063
-
Influence of interferon beta-1a dose frequency on PBMC cytokine secretion and biological effect markers
-
10.1016/S0165-5728(99)00029-6 10496186
-
Rothuizen LE Buclin T Spertini F Trinchard I Munafo A Buchwalder PA Ythier A Biollaz J Influence of interferon beta-1a dose frequency on PBMC cytokine secretion and biological effect markers J Neuroimmunol 1999, 99:131-141. 10.1016/S0165-5728(99)00029-6 10496186
-
(1999)
J Neuroimmunol
, vol.99
, pp. 131-141
-
-
Rothuizen, L.E.1
Buclin, T.2
Spertini, F.3
Trinchard, I.4
Munafo, A.5
Buchwalder, P.A.6
Ythier, A.7
Biollaz, J.8
-
57
-
-
60749130354
-
IFN/TNF cross-regulation in vivo during infliximab treatment in rheumatoid arthritis
-
[abstract 1356]
-
van Baarsen EGM Wijbrandts CA Rustenburg F Cantaert T Pouw Kraan van der TC Baeten D Dijkmans B Tak PP Verweij CL IFN/TNF cross-regulation in vivo during infliximab treatment in rheumatoid arthritis [abstract 1356] Arthritis Rheum 2008, 58:S670.
-
(2008)
Arthritis Rheum
, vol.58
-
-
van Baarsen, E.G.M.1
Wijbrandts, C.A.2
Rustenburg, F.3
Cantaert, T.4
Pouw Kraan, T.C.5
Baeten, D.6
Dijkmans, B.7
Tak, P.P.8
Verweij, C.L.9
-
58
-
-
0042976370
-
Gene expression profiles in human autoimmune disease
-
10.2174/1381612033454360 12871194
-
Aune TM Maas K Moore JH Olsen NJ Gene expression profiles in human autoimmune disease Curr Pharm Des 2003, 9:1905-1917. 10.2174/ 1381612033454360 12871194
-
(2003)
Curr Pharm Des
, vol.9
, pp. 1905-1917
-
-
Aune, T.M.1
Maas, K.2
Moore, J.H.3
Olsen, N.J.4
-
59
-
-
0036644048
-
Cutting edge: Molecular portrait of human autoimmune disease
-
12077221
-
Maas K Chan S Parker J Slater A Moore J Olsen N Aune TM Cutting edge: molecular portrait of human autoimmune disease J Immunol 2002, 169:5-9. 12077221
-
(2002)
J Immunol
, vol.169
, pp. 5-9
-
-
Maas, K.1
Chan, S.2
Parker, J.3
Slater, A.4
Moore, J.5
Olsen, N.6
Aune, T.M.7
|