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Volumn 4981 LNCS, Issue , 2008, Pages 429-442

Modeling and simulation of biochemical processes using stochastic hybrid systems: The sugarcataract development process

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CONTROLLED DRUG DELIVERY; STOCHASTIC CONTROL SYSTEMS; STOCHASTIC SYSTEMS;

EID: 60749090821     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-78929-1_31     Document Type: Conference Paper
Times cited : (5)

References (20)
  • 1
    • 14344265954 scopus 로고    scopus 로고
    • Symbolic reachable set computation of piecewise affine hybrid automata and its application to biological modeling: Delta-notch protein signaling
    • Ghosh, R., Tomlin, C.: Symbolic reachable set computation of piecewise a.ne hybrid automata and its application to biological modeling: Delta-notch protein signalling. Sys. Bio. 1, 170-183 (2004)
    • (2004) Sys. Bio. , vol.1 , pp. 170-183
    • Ghosh, R.1    Tomlin, C.2
  • 2
    • 84944214361 scopus 로고    scopus 로고
    • Hybrid modeling and simulation of biomolecular networks
    • Di Benedetto, M.D., Sangiovanni-Vincentelli, A.L. (eds.) HSCC 2001. Springer, Heidelberg
    • Alur, R., Belta, C., Ivanicic, F., Kumar, V., Mintz, M., Pappas, G., Rubin, H., Schug, J.: Hybrid modeling and simulation of biomolecular networks. In: Di Benedetto, M.D., Sangiovanni-Vincentelli, A.L. (eds.) HSCC 2001. LNCS, vol.2034, pp. 19-33. Springer, Heidelberg (2001)
    • (2001) LNCS , vol.2034 , pp. 19-33
    • Alur, R.1    Belta, C.2    Ivanicic, F.3    Kumar, V.4    Mintz, M.5    Pappas, G.6    Rubin, H.7    Schug, J.8
  • 4
    • 35048839340 scopus 로고    scopus 로고
    • Modeling subtilin production in bacillus subtilis using stochastic hybrid systems
    • Alur, R., Pappas, G.J. (eds.) HSCC 2004. Springer, Heidelberg
    • Hu, J., Wu, W., Sastry, S.: Modeling subtilin production in bacillus subtilis using stochastic hybrid systems. In: Alur, R., Pappas, G.J. (eds.) HSCC 2004. LNCS, vol.2993, pp. 417-431. Springer, Heidelberg (2004)
    • (2004) LNCS , vol.2993 , pp. 417-431
    • Hu, J.1    Wu, W.2    Sastry, S.3
  • 6
    • 22944451159 scopus 로고    scopus 로고
    • Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions
    • Salis, H., Kaznessis, Y.: Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions. J. Chem. Phys. 122, 54-103 (2005)
    • (2005) J. Chem. Phys. , vol.122 , pp. 54-103
    • Salis, H.1    Kaznessis, Y.2
  • 9
    • 0043282192 scopus 로고    scopus 로고
    • Absorbing boundaries and optimal stopping in a stochastic differential equation
    • Mannella, R.: Absorbing boundaries and optimal stopping in a stochastic differential equation. Phys. Lett. A 254, 257-262 (1999)
    • (1999) Phys. Lett. A , vol.254 , pp. 257-262
    • Mannella, R.1
  • 10
    • 36549098776 scopus 로고
    • Extended brownian dynamics. iii. three dimensional difiusion
    • Lamm, G.: Extended brownian dynamics. iii. three dimensional difiusion. J. Chem. Phys. 80(6), 2845-2855 (1983)
    • (1983) J. Chem. Phys. , vol.80 , Issue.6 , pp. 2845-2855
    • Lamm, G.1
  • 11
    • 37649026611 scopus 로고    scopus 로고
    • Efficient brownian dynamics simulation of particles near walls. i. reffecting and absorbing walls.
    • Peters, E., Barenbrug, T.: Efficient brownian dynamics simulation of particles near walls. i. reffecting and absorbing walls. Physical Review 66, 1-7 (2002)
    • (2002) Physical Review , vol.66 , pp. 1-7
    • Peters, E.1    Barenbrug, T.2
  • 12
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz, M., Levine, A., Siggia, E., Swain, P.: Stochastic gene expression in a single cell. Science 1183(297) (2002)
    • (2002) Science , vol.1183 , pp. 297
    • Elowitz, M.1    Levine, A.2    Siggia, E.3    Swain, P.4
  • 13
    • 60749093862 scopus 로고    scopus 로고
    • Theoretical foundations of general stochastic hybrid systems: Modeling and optimal control
    • Bujorianu, M., Lygeros, J.: Theoretical foundations of general stochastic hybrid systems: Modeling and optimal control. In: IEEE Conf. on Dec. and Cont. (2004)
    • (2004) IEEE Conf. on Dec. and Cont.
    • Bujorianu, M.1    Lygeros, J.2
  • 14
    • 33745777189 scopus 로고    scopus 로고
    • Computational methods for reachability analysis of stochastic hybrid systems
    • Hespanha, J.P., Tiwari, A. (eds.) HSCC 2006. Springer, Heidelberg
    • Koutsoukos, X., Riley, D.: Computational methods for reachability analysis of stochastic hybrid systems. In: Hespanha, J.P., Tiwari, A. (eds.) HSCC 2006. LNCS, vol.3927, pp. 377-391. Springer, Heidelberg (2006)
    • (2006) LNCS , vol.3927 , pp. 377-391
    • Koutsoukos, X.1    Riley, D.2
  • 15
    • 33745776093 scopus 로고    scopus 로고
    • Structured modeling of concurrent stochastic hybrid systems
    • Lakhnech, Y., Yovine, S. (eds.) FORMATS 2004 and FTRTFT 2004. Springer, Heidelberg
    • Bernadskiy, M., Sharykin, R., Alur, R.: Structured modeling of concurrent stochastic hybrid systems. In: Lakhnech, Y., Yovine, S. (eds.) FORMATS 2004 and FTRTFT 2004. LNCS, vol.3253, pp. 309-324. Springer, Heidelberg (2004)
    • (2004) LNCS , vol.3253 , pp. 309-324
    • Bernadskiy, M.1    Sharykin, R.2    Alur, R.3
  • 16
    • 38049108497 scopus 로고    scopus 로고
    • Safety analysis of sugar cataract development using stochastic hybrid systems
    • Bemporad, A., Bicchi, A., Buttazzo, G. (eds.) HSCC 2007. Springer, Heidelberg
    • Riley, D., Koutsoukos, X., Riley, K.: Safety analysis of sugar cataract development using stochastic hybrid systems. In: Bemporad, A., Bicchi, A., Buttazzo, G. (eds.) HSCC 2007. LNCS, vol.4416, pp. 758-761. Springer, Heidelberg (2007)
    • (2007) LNCS , vol.4416 , pp. 758-761
    • Riley, D.1    Koutsoukos, X.2    Riley, K.3
  • 18
    • 84996131097 scopus 로고    scopus 로고
    • Euler schemes and half-space approximation for the simulation of diffusion in a domain
    • Gobet, E.: Euler schemes and half-space approximation for the simulation of diffusion in a domain. ESAIM: Probability and Statistics 5, 261-297 (2001)
    • (2001) ESAIM: Probability and Statistics , vol.5 , pp. 261-297
    • Gobet, E.1
  • 19
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie, D.: A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comp. Phys. 22, 403-434 (1976)
    • (1976) J. Comp. Phys. , vol.22 , pp. 403-434
    • Gillespie, D.1
  • 20
    • 33748279268 scopus 로고    scopus 로고
    • R-leaping: Accelerating the stochastic simulation algorithm by reaction leaps
    • Auger, A., Chatelain, P., Koumoutsakos, P.: R-leaping: Accelerating the stochastic simulation algorithm by reaction leaps. J. Chem. Phys. 125, 84-103 (2006)
    • (2006) J. Chem. Phys. , vol.125 , pp. 84-103
    • Auger, A.1    Chatelain, P.2    Koumoutsakos, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.