-
1
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
10.1002/ (SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2 10612281
-
Perkins DN Pappin DJC Creasy DM Cottrell JS Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20:3551-3567 10.1002/ (SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2 10612281
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
2
-
-
34848889259
-
The Paragon algorithm: A next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
-
10.1074/mcp.T600050-MCP200
-
Shilov IV Seymour SL Patel AA Loboda A Tang WH Keating SP Hunter CL Nuwaysir LM Schaeffer DA The Paragon algorithm: A next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra Mol Cell Prot 2007, 6:1638-1655 10.1074/mcp.T600050-MCP200
-
(2007)
Mol Cell Prot
, vol.6
, pp. 1638-1655
-
-
Shilov, I.V.1
Seymour, S.L.2
Patel, A.A.3
Loboda, A.4
Tang, W.H.5
Keating, S.P.6
Hunter, C.L.7
Nuwaysir, L.M.8
Schaeffer, D.A.9
-
4
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
10.1038/13690
-
Gygi SP Rist B Gerber SA Turecek F Gelb MH Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nature Biotech 1999, 17:994-998 10.1038/13690
-
(1999)
Nature Biotech
, vol.17
, pp. 994-998
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
-
5
-
-
0037345710
-
Wheat proteomics: Relationship between fine chromosome deletion and protein expression
-
10.1002/pmic.200390044 12627384
-
Islam N Tsujimoto H Hirano H Wheat proteomics: Relationship between fine chromosome deletion and protein expression Proteomics 2003, 3:307-316 10.1002/pmic.200390044 12627384
-
(2003)
Proteomics
, vol.3
, pp. 307-316
-
-
Islam, N.1
Tsujimoto, H.2
Hirano, H.3
-
7
-
-
33646236590
-
Mapping the Arabidopsis organelle proteome
-
1458916 16618929 10.1073/pnas.0506958103
-
Dunkley TPJ Svenja H Shadforth IP Runions J Weimar T Hanton SL Griffin JL Bessant C Brandizzi F Hawes C Watson RB Dupree P Lilley KS Mapping the Arabidopsis organelle proteome Proc Nat Acad Sci USA 2006, 103(17):6518-6523 1458916 16618929 10.1073/pnas.0506958103
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, Issue.17
, pp. 6518-6523
-
-
Dunkley, T.P.J.1
Svenja, H.2
Shadforth, I.P.3
Runions, J.4
Weimar, T.5
Hanton, S.L.6
Griffin, J.L.7
Bessant, C.8
Brandizzi, F.9
Hawes, C.10
Watson, R.B.11
Dupree, P.12
Lilley, K.S.13
-
8
-
-
33750117539
-
Analysis of the defense phosphoproteome of Arabidopsis thaliana using differential mass tagging
-
10.1002/pmic.200500172 16850419
-
Jones AME Bennett MH Mansfield JW Grant M Analysis of the defense phosphoproteome of Arabidopsis thaliana using differential mass tagging Proteomics 2006, 6:4155-4165 10.1002/pmic.200500172 16850419
-
(2006)
Proteomics
, vol.6
, pp. 4155-4165
-
-
Jones, A.M.E.1
Bennett, M.H.2
Mansfield, J.W.3
Grant, M.4
-
9
-
-
34447117005
-
Increased abundance of proteins involved in phytosiderophore production in boron-tolerant barley
-
1914127 17478636 10.1104/pp.107.096388
-
Patterson J Ford K Cassin A Natera S Bacic A Increased abundance of proteins involved in phytosiderophore production in boron-tolerant barley Plant Physiol 2007, 144:1612-1631 1914127 17478636 10.1104/ pp.107.096388
-
(2007)
Plant Physiol
, vol.144
, pp. 1612-1631
-
-
Patterson, J.1
Ford, K.2
Cassin, A.3
Natera, S.4
Bacic, A.5
-
10
-
-
32444450038
-
The molecular basis for wine grape quality - A volatile subject
-
10.1126/science.1118962 16469915
-
Lund ST Bohlmann J The molecular basis for wine grape quality - A volatile subject Science 2006, 311:804-805 10.1126/science.1118962 16469915
-
(2006)
Science
, vol.311
, pp. 804-805
-
-
Lund, S.T.1
Bohlmann, J.2
-
12
-
-
34247237057
-
Analysis of protein changes during grape berry ripening by 2-DE and MALDI-TOF
-
10.1002/pmic.200600974 17683049
-
Giribaldi M Perugini I Sauvage F-X Schubert A Analysis of protein changes during grape berry ripening by 2-DE and MALDI-TOF Proteomics 2007, 7:3154-3170 10.1002/pmic.200600974 17683049
-
(2007)
Proteomics
, vol.7
, pp. 3154-3170
-
-
Giribaldi, M.1
Perugini, I.2
Sauvage, F.-X.3
Schubert, A.4
-
13
-
-
27144505199
-
Proteomic analysis of grapevine (Vitis vinifera L.) tissues subjected to herbicide stress
-
10.1093/jxb/eri271 16216849
-
Castro AJ Carapito C Zorn N Magné C Leize E Van Dorsselaer A Clément C Proteomic analysis of grapevine (Vitis vinifera L.) tissues subjected to herbicide stress J Exp Bot 2005, 56:2783-2795 10.1093/jxb/eri271 16216849
-
(2005)
J Exp Bot
, vol.56
, pp. 2783-2795
-
-
Castro, A.J.1
Carapito, C.2
Zorn, N.3
Magné, C.4
Leize, E.5
Van Dorsselaer, A.6
Clément, C.7
-
14
-
-
0942265394
-
Grape berry biochemistry revisited upon proteomic analysis of the mesocarp
-
10.1002/pmic.200300499 14730682
-
Sarry JE Sommerer N Sauvage FX Bergoin A Rossignol M Albagnac G Romieu C Grape berry biochemistry revisited upon proteomic analysis of the mesocarp Proteomics 2004, 4:201-215 10.1002/pmic.200300499 14730682
-
(2004)
Proteomics
, vol.4
, pp. 201-215
-
-
Sarry, J.E.1
Sommerer, N.2
Sauvage, F.X.3
Bergoin, A.4
Rossignol, M.5
Albagnac, G.6
Romieu, C.7
-
15
-
-
0347134638
-
Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds
-
10.1002/elps.200305500 12874872
-
Wang W Scali M Vignani R Spadafora A Sensi E Mazzuca S Cresti M Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds Electrophoresis 2003, 24:2369-2375 10.1002/elps.200305500 12874872
-
(2003)
Electrophoresis
, vol.24
, pp. 2369-2375
-
-
Wang, W.1
Scali, M.2
Vignani, R.3
Spadafora, A.4
Sensi, E.5
Mazzuca, S.6
Cresti, M.7
-
16
-
-
3042518827
-
A capillary electrophoretic method for isolation and characterization of grape xylem proteins
-
Jain AK Basha SM A capillary electrophoretic method for isolation and characterization of grape xylem proteins Afr J Biotech 2003, 2:66-70
-
(2003)
Afr J Biotech
, vol.2
, pp. 66-70
-
-
Jain, A.K.1
Basha, S.M.2
-
17
-
-
34548785463
-
Generation of ESTs in it Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development
-
10.1016/j.gene.2007.07.016 17761391
-
Peng FY Reid KE Liao N Schlosser J Lijavetzky D Holt R Martínez Zapater JM Jones S Marra M Bohlmann J Lund ST Generation of ESTs in it Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development Gene 2007, 402:40-50 10.1016/j.gene.2007.07.016 17761391
-
(2007)
Gene
, vol.402
, pp. 40-50
-
-
Peng, F.Y.1
Reid, K.E.2
Liao, N.3
Schlosser, J.4
Lijavetzky, D.5
Holt, R.6
Martínez Zapater, J.M.7
Jones, S.8
Marra, M.9
Bohlmann, J.10
Lund, S.T.11
-
18
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
9521921
-
Ewing B Hillier L Wendl MC Green P Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 1998, 8:175-185 9521921
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
19
-
-
0141853948
-
PCAP: A whole-genome assembly program
-
403719 12952883 10.1101/gr.1390403
-
Huang X Wang J Aluru S Yang S-P Hillier L PCAP: A whole-genome assembly program Genome Res 2003, 13:2164-2170 403719 12952883 10.1101/gr.1390403
-
(2003)
Genome Res
, vol.13
, pp. 2164-2170
-
-
Huang, X.1
Wang, J.2
Aluru, S.3
Yang, S.-P.4
Hillier, L.5
-
21
-
-
0141787935
-
A grape ASR protein involved in sugar and abscisic acid signaling
-
181338 12953118 10.1105/tpc.013854
-
Çakir B Agasse A Gaillard C Saumonneau A Delrot S Atanassova R A grape ASR protein involved in sugar and abscisic acid signaling Plant Cell 2003, 15:2165-2180 181338 12953118 10.1105/tpc.013854
-
(2003)
Plant Cell
, vol.15
, pp. 2165-2180
-
-
Çakir, B.1
Agasse, A.2
Gaillard, C.3
Saumonneau, A.4
Delrot, S.5
Atanassova, R.6
-
22
-
-
0033165574
-
The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein
-
144274 10402433 10.1105/tpc.11.7.1337
-
Walker AR Davison PA Bolognesi-Winfield AC James CM Srinivasan N Blundell TL Esch JJ Marks MD Gray JC The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein Plant Cell 1999, 11:1337-1350 144274 10402433 10.1105/tpc.11.7.1337
-
(1999)
Plant Cell
, vol.11
, pp. 1337-1350
-
-
Walker, A.R.1
Davison, P.A.2
Bolognesi-Winfield, A.C.3
James, C.M.4
Srinivasan, N.5
Blundell, T.L.6
Esch, J.J.7
Marks, M.D.8
Gray, J.C.9
-
23
-
-
2342648914
-
Retrotransposon-induced mutations in grape skin color
-
10.1126/science.1095011 15143274
-
Kobayashi S Goto-Yamamoto N Hirochika H Retrotransposon-induced mutations in grape skin color Science 2004, 304:982 10.1126/ science.1095011 15143274
-
(2004)
Science
, vol.304
, pp. 982
-
-
Kobayashi, S.1
Goto-Yamamoto, N.2
Hirochika, H.3
-
24
-
-
20444402692
-
Abscisic acid biosynthesis and catabolism
-
10.1146/annurev.arplant.56.032604.144046 15862093
-
Nambara E Marion-Poll A Abscisic acid biosynthesis and catabolism Annu Rev Plant Biol 2005, 56:165-185 10.1146/annurev.arplant.56.032604.144046 15862093
-
(2005)
Annu Rev Plant Biol
, vol.56
, pp. 165-185
-
-
Nambara, E.1
Marion-Poll, A.2
-
25
-
-
48249141845
-
The Arabidopsis thaliana Type I isopentenyl diphosphate isomerases are targeted to multiple subcellular compartments and have overlapping functions in isoprenoid biosynthesis
-
10.1105/tpc.107.053926 18319397
-
Phillips MA D'Auria JC Gershenzon J Pichersky E The Arabidopsis thaliana Type I isopentenyl diphosphate isomerases are targeted to multiple subcellular compartments and have overlapping functions in isoprenoid biosynthesis Plant Cell 2008, 20:677-696 10.1105/tpc.107.053926 18319397
-
(2008)
Plant Cell
, vol.20
, pp. 677-696
-
-
Phillips, M.A.1
D'Auria, J.C.2
Gershenzon, J.3
Pichersky, E.4
-
26
-
-
50249105155
-
Gene expression analyses in individual grape (Vitis vinifera L.) berries during ripening initiation reveal that pigmentation intensity is a valid indicator of developmental staging within the cluster
-
10.1007/s11103-008-9371-z 18642093
-
Lund ST Peng FY Nayar T Reid KE Schlosser J Gene expression analyses in individual grape (Vitis vinifera L.) berries during ripening initiation reveal that pigmentation intensity is a valid indicator of developmental staging within the cluster Plant Mol Biol 2008, 68(3):301-315 10.1007/ s11103-008-9371-z 18642093
-
(2008)
Plant Mol Biol
, vol.68
, Issue.3
, pp. 301-315
-
-
Lund, S.T.1
Peng, F.Y.2
Nayar, T.3
Reid, K.E.4
Schlosser, J.5
-
27
-
-
34447643281
-
Tissue-specific mRNA expression profiling in grape berry tissues
-
1925093 17584945 10.1186/1471-2164-8-187
-
Grimplet J Deluc LG Tillett RL Wheatley MD Schlauch KA Cramer GR Cushman JC Tissue-specific mRNA expression profiling in grape berry tissues BMC Genomics 2007, 8:187 1925093 17584945 10.1186/1471-2164-8-187
-
(2007)
BMC Genomics
, vol.8
, pp. 187
-
-
Grimplet, J.1
Deluc, L.G.2
Tillett, R.L.3
Wheatley, M.D.4
Schlauch, K.A.5
Cramer, G.R.6
Cushman, J.C.7
-
28
-
-
0035983945
-
Cloning and characterization of the abscisic acid-specific glucosyltransferase gene from adzuki bean seedlings
-
166522 12114582 10.1104/pp.001784
-
Xu Z-J Nakajima M Suzuki Y Yamaguchi I Cloning and characterization of the abscisic acid-specific glucosyltransferase gene from adzuki bean seedlings Plant Physiol 2002, 129:1285-1295 166522 12114582 10.1104/ pp.001784
-
(2002)
Plant Physiol
, vol.129
, pp. 1285-1295
-
-
Xu, Z.-J.1
Nakajima, M.2
Suzuki, Y.3
Yamaguchi, I.4
-
29
-
-
0038381030
-
The Arabidopsis cupin domain protein AtPirin1 interacts with the G Protein α-subunit GPA1 and regulates seed germination and early seedling development
-
165402 12837948 10.1105/tpc.011890
-
Lapik YR Kaufman LS The Arabidopsis cupin domain protein AtPirin1 interacts with the G Protein α-subunit GPA1 and regulates seed germination and early seedling development Plant Cell 2003, 15:1578-1590 165402 12837948 10.1105/tpc.011890
-
(2003)
Plant Cell
, vol.15
, pp. 1578-1590
-
-
Lapik, Y.R.1
Kaufman, L.S.2
-
30
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
The French-Italian Public Consortium for Grapevine Genome Characterization 10.1038/nature06148 17721507
-
The French-Italian Public Consortium for Grapevine Genome Characterization The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Nature 2007, 449:463-468 10.1038/nature06148 17721507
-
(2007)
Nature
, vol.449
, pp. 463-468
-
-
-
31
-
-
41249098849
-
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
-
2147077 18094749 10.1371/journal.pone.0001326
-
Velasco R Zharkikh A Troggio M Cartwright DA Cestaro A Pruss D Pindo M FitzGerald LM Vezzulli S Reid J Malacarne G Iliev D Coppola G Wardell B Micheletti D Macalma T Facci M Mitchell JT Perazzolli M Eldredge G Gatto P Oyzerski R Moretto M Gutin N Stefanini M Chen Y Segala C Davenport C Demattè L Mraz A Battilana J Stormo K Costa F Tao Q Si-Ammour A Harkins T Lackey A Perbost C Taillon B Stella A Solovyev V Fawcett JA Sterck L Vandepoele K Grando SM Toppo S Moser C Lanchbury J Bogden R Skolnick M Sgaramella V Bhatnagar SK Paolo F Gutin A Peer Van de Y Salamini F Viola R A high quality draft consensus sequence of the genome of a heterozygous grapevine variety PloS One 2007, 2:e1326 2147077 18094749 10.1371/journal.pone.0001326
-
(2007)
PloS One
, vol.2
-
-
Velasco, R.1
Zharkikh, A.2
Troggio, M.3
Cartwright, D.A.4
Cestaro, A.5
Pruss, D.6
Pindo, M.7
FitzGerald, L.M.8
Vezzulli, S.9
Reid, J.10
Malacarne, G.11
Iliev, D.12
Coppola, G.13
Wardell, B.14
Micheletti, D.15
Macalma, T.16
Facci, M.17
Mitchell, J.T.18
Perazzolli, M.19
Eldredge, G.20
Gatto, P.21
Oyzerski, R.22
Moretto, M.23
Gutin, N.24
Stefanini, M.25
Chen, Y.26
Segala, C.27
Davenport, C.28
Demattè, L.29
Mraz, A.30
Battilana, J.31
Stormo, K.32
Costa, F.33
Tao, Q.34
Si-Ammour, A.35
Harkins, T.36
Lackey, A.37
Perbost, C.38
Taillon, B.39
Stella, A.40
Solovyev, V.41
Fawcett, J.A.42
Sterck, L.43
Vandepoele, K.44
Grando, S.M.45
Toppo, S.46
Moser, C.47
Lanchbury, J.48
Bogden, R.49
Skolnick, M.50
Sgaramella, V.51
Bhatnagar, S.K.52
Paolo, F.53
Gutin, A.54
Peer, Y.55
Salamini, F.56
Viola, R.57
more..
-
32
-
-
37849025862
-
Quantitative proteomics in plants: Choices in abundance
-
2174896 18055608 10.1105/tpc.107.053991
-
Thelen JJ Peck SC Quantitative proteomics in plants: Choices in abundance Plant Cell 2007, 19:3339-3346 2174896 18055608 10.1105/ tpc.107.053991
-
(2007)
Plant Cell
, vol.19
, pp. 3339-3346
-
-
Thelen, J.J.1
Peck, S.C.2
-
33
-
-
44949253954
-
Developmental changes in the milk fat globule membrane proteome during the transition from colostrum to milk
-
10.3168/jds.2007-0952 18487653
-
Reinhardt TA Lippolis JD Developmental changes in the milk fat globule membrane proteome during the transition from colostrum to milk J Dairy Sci 2008, 91:2307-2318 10.3168/jds.2007-0952 18487653
-
(2008)
J Dairy Sci
, vol.91
, pp. 2307-2318
-
-
Reinhardt, T.A.1
Lippolis, J.D.2
-
34
-
-
33646264529
-
Advances in proteomics data analysis and display using an accurate mass and time tag approach
-
10.1002/mas.20071
-
Zimmer JSD Monroe ME Qian WJ Smith RD Advances in proteomics data analysis and display using an accurate mass and time tag approach Mass Spec 2006, 25:450-482 10.1002/mas.20071
-
(2006)
Mass Spec
, vol.25
, pp. 450-482
-
-
Zimmer, J.S.D.1
Monroe, M.E.2
Qian, W.J.3
Smith, R.D.4
-
35
-
-
33645827577
-
Grapes on steroids. Brassinosteroids are involved in grape berry ripening
-
1326039 16361521 10.1104/pp.105.070706
-
Symons GM Davies C Shavrukov Y Dry IB Reid JB Thomas MR Grapes on steroids. Brassinosteroids are involved in grape berry ripening Plant Physiol 2006, 140:150-158 1326039 16361521 10.1104/pp.105.070706
-
(2006)
Plant Physiol
, vol.140
, pp. 150-158
-
-
Symons, G.M.1
Davies, C.2
Shavrukov, Y.3
Dry, I.B.4
Reid, J.B.5
Thomas, M.R.6
-
36
-
-
38849124369
-
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development
-
2220006 18034876 10.1186/1471-2164-8-429
-
Deluc LG Grimplet J Wheatley MD Tillett RL Quilici DR Deluc LG Grimplet J Wheatley MD Tillett RL Quilici DR Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development BMC Genomics 2007, 8:429 2220006 18034876 10.1186/1471-2164-8-429
-
(2007)
BMC Genomics
, vol.8
, pp. 429
-
-
Deluc, L.G.1
Grimplet, J.2
Wheatley, M.D.3
Tillett, R.L.4
Quilici, D.R.5
Deluc, L.G.6
Grimplet, J.7
Wheatley, M.D.8
Tillett, R.L.9
Quilici, D.R.10
-
37
-
-
38949154551
-
Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at veraison
-
2228314 18034875 10.1186/1471-2164-8-428
-
Pilati S Perazzolli M Malossini A Cestaro A Demattè L Fontana P Dal Ri A Viola R Velasco R Moser C Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at veraison BMC Genomics 2007, 8:428 2228314 18034875 10.1186/ 1471-2164-8-428
-
(2007)
BMC Genomics
, vol.8
, pp. 428
-
-
Pilati, S.1
Perazzolli, M.2
Malossini, A.3
Cestaro, A.4
Demattè, L.5
Fontana, P.6
Dal Ri, A.7
Viola, R.8
Velasco, R.9
Moser, C.10
|