Genetic diversity of Grape vine accessions from Iran, Russia and USA using microsatellite markers

Pakistan Journal of Biological Sciences

Volumn 12, Issue 2, 2009, Pages 152-157

  Ramezam, A ^a,c   Haddad, R ^a   Dorostkar, M ^b  

^a IMAM KHOMEINI INTERNATIONAL UNIVERSITY   (Iran)

^b Fars Research Center for Agriculture and Natural Resources Iran   (Iran)

^c SHIRAZ UNIVERSITY   (Iran)

Author keywords

Genetic polymorphism; Population analysis; SSRs; Vitis vinifera

Indexed keywords

VITACEAE; VITIS; VITIS VINIFERA;

MICROSATELLITE DNA;

ARTICLE; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GRAPE; IRAN; MOLECULAR EVOLUTION; PLANT GENE; RUSSIAN FEDERATION; UNITED STATES;

CALIFORNIA; EVOLUTION, MOLECULAR; GENE FREQUENCY; GENES, PLANT; GENETIC VARIATION; IRAN; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; RUSSIA; VITIS;

EID: 60549089076     PISSN: 10288880     EISSN: 18125735     Source Type: Journal    
DOI: 10.3923/pjbs.2009.152.157     Document Type: Article

References (31)

1. Adam-Blondon, A.F., C. Roux, D. Claux, G. Bulterlin, D, Merdinoglu and P. This, 2004, Mapping 245 SSRs markers on the Vitis vinifera genome: A tool for grape genetics, Theor. Applied Genet., 109: 1017-1027.
2. Bassam B.J. and P.M. Gresshoff, 1991 Fast and sensitive silver staining of DNA in acrylamide gels. Anal. Biochem., 196: 80-83.
3. Bowers, J.E. and C.P. Meredith. 1996. Genetic similarities among wine grape cultivars revealed by Restriction Fragment Length Polymorphism (RFLP) analysis. J. Am. Soc. Hortic. Sci., 121: 620-624.
4. Bowers, J.E., G.S, Dangl and CP, Meredith, 1999. Development and characterization of additional microsatellite DNA markers for grape. Am. J. Enol. Vitic., 50: 243-246.
5. Cipriani, G., G. Freza, E. Peterlunger and R. Tectolin, 1994. drape vine fingerprint using microsatellite repeats. Vitis, 33: 211-215.
6. Fatahi, R., A. Ebadi, N. Bassil, S.A. Mehlenbacher and Z. Zamani. 2(H)3. Characterization of Iranian grapevine cultivars using microsatellite markers. Vitis, 42: 185-192.
7. Grando, M.S., 13. Bellin, K.J. Edwards, C. Pozzi, M. Stefanini and R. Velaseo. 2003. Molecular linkage maps of Vitis vinifera L. and Vitis riparia mchx. Theor. Applied Genet., 106: 1213-1224.
8. Laimer, M., D, Mendonça. F. Maghuly, G. Marzban and S, Leopold et al., 2005, Biotechnology of temperate fruit trees and grapevines. Acta Biochim. Polonica, 52: 673-678.
9. Lewontin, R.C., 1972. The apportionment of human diversity. Evol. Biol., 6: 381-398.
10. Lodhi, M.A., G.N. Ye, N.F. Weeden and B.I. Reisch, 1994. A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol. Biol. Reporter, 12: 6-13.
11. Merdinoglu, D., G. Butterlin, L. Bevilacqua, V. Chiquet, A.F. Adam-Blondon and S. Decroocq, 2005. Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR. Mol. Breed., 15: 349-366.
12. Mohammadi, S.A. and B.M. Prasanna, 2003. Analysis of genetic diversity in crop plants-Salient statistical tools and considerations. Crop. Sci. 43: 1235-1248.
13. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Nat. Acad. Sci. USA., 70: 3321-3323.
14. Nei, M. 1978, Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89: 583-590.
15. Oliviera, E.J., J.G. Padua, M.I. Zucchi and R. Venkovsky, 2006. Origin, evolution and genome distribution of microsatellites. Biology, 29:294-307.
16. Pellerone, F.I., J.K. Edwards and M.R. Thomas, 2001. Grapevine microsatellite repeats: Isolation, characterization and use for grape germ plasm from Southern Italy. Vitis, 40: 179-186.
17. Piljac, J., E, Maletic, J.K, Kontic, G.S, Dangl and 1. Pejic et al., 2002. The parentage of pošip bijeli, a major white wine cultivar of Croatia. Vilis, 41: 83-87.
18. Pollefeys, P. and J. Bousquet, 2003. Molecular genetic diversity of the French-American grapevine hybrids cultivated in North America, Genome, 46: 1037-1048.
19. Riaz, S., G.S. Dangl K J. Edwards and CP. Meredith, 2004. A microsatellite marker based framework linkage map of Vitis vinifera L, Theor, Applied Genet., 108: 864-872.
20. Roa., A., P. Chavarriaga-Aguirre. M. Duque, M. Maya, M. Bonierbale, C. Iglesias and J. Tohme, 2000. Cross-species amplification of Cassava (Manihot esculenta) (Euphoprbiaceae) microsatellites: Allelic polymorphism and degree of relationship. Am. J. Bot., 87: 1647-1655.
21. Rohlf, F.J., 1998. NTSYS-pc, Numerical Taxonomy and Multivariate Analysis System, Version 2.02. Exeter Software, New York.
22. Scott, K.D., P. Eggler, G. Seaton, M. Rossetto, E.M. Ablett. L,S. Lee and R.J. Henry, 2000. Analysis of SSRs derived from grape ESTs, Theor. Applied Genet., 100: 723-726.
23. Sefc, K,M., F. Regner, E. Tureschek, J. Glo and H. Steinkellner, 1999. Identification of microsatellite sequences in Vitis riparia and their application for genotyping of different Vitis species. Genome, 42: 367-373.
24. Sefc, K.M., M.S, Lope, F, Lefort, R. Botta and K.A. Roubelakis-Angelakis et at., 2000. Microsatellite variability in grapevine cultivars from different European regions and evaluation of assignment testing to assess the geographic origin of cultivars. Theor. Applied Genet., 100: 498-505.
25. This, P., A, Jung, P. Boccacci, J. Borrego and R. Botta et al. 2004. Development of a standard set of microsatellite reference alleles for identification of grape cultivars, Theor. Applied Genet., 109: 1448-1458.
26. Thomas, M.R. and N.S. Scott, 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analyzed as sequence-tagged sites (STSs), Theor. Applied Genet, 86: 985-990.
27. Thomas, M.R., P. Cain and N.S. Scott, 1994. DNA typing of grapevine: A universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol. BioL 25; 939-949.
28. Vouillamoz, J.F, D. Maigre and CP. Meredith, 2003. Microsatellite analysis of ancient alpine grime cultivars: Pedigree reconstruction of Vitis vinifera L. Cornalin du valais. Theor. Applied Genet., 107: 448-454.
29. Vouillamoz, J.F., D. Maigre and A, Meredith, 2004, Identity and parentage of two alpine grape cultivars from Switzerland. Vitis, 43: 81-87.
30. Xu, Y., M. Rong-Cai, H. Xie and C Ming-Qing, 2004, Development of SSR markers for the phylogenetic analysis of almond trees from China and Mediterranean region. Genome, 47: 1091-1104.
31. Yeh, F,C., R,C. Yang and T. Boyle, 1997. POPGENE version 1.21. http://www.ualberia.ea/-fyeh.