-
2
-
-
0037007468
-
Protein stability: the value of 'old literature'
-
Franks F. Protein stability: the value of 'old literature'. Biophys. Chemist. 96 (2002) 117-127
-
(2002)
Biophys. Chemist.
, vol.96
, pp. 117-127
-
-
Franks, F.1
-
3
-
-
0036286851
-
Solvation and hydration of proteins and nucleic acids: a theoretical view of simulation and experiment
-
Makarov V., Pettitt B.M., and Feig M. Solvation and hydration of proteins and nucleic acids: a theoretical view of simulation and experiment. Acc. Chem. Res. 35 (2002) 376-384
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 376-384
-
-
Makarov, V.1
Pettitt, B.M.2
Feig, M.3
-
4
-
-
0035815743
-
The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media
-
Minton A.P. The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media. J. Biol. Chem. 276 (2001) 10577-10580
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10577-10580
-
-
Minton, A.P.1
-
5
-
-
0035478585
-
Macromolecular crowding: obvious but underappreciated
-
Ellis R.J. Macromolecular crowding: obvious but underappreciated. Trends Biochem. Sci. 26 (2001) 597-604
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 597-604
-
-
Ellis, R.J.1
-
6
-
-
0037418563
-
Metabolic buffering exerted by macromolecular crowding on DNA-DNA interactions: origin and physiological significance
-
Goobes R., Kahana N., Cohen O., and Minsky A. Metabolic buffering exerted by macromolecular crowding on DNA-DNA interactions: origin and physiological significance. Biochemistry 42 (2003) 2431-2440
-
(2003)
Biochemistry
, vol.42
, pp. 2431-2440
-
-
Goobes, R.1
Kahana, N.2
Cohen, O.3
Minsky, A.4
-
7
-
-
0023051711
-
Micellar enzymology
-
Martinek K., Levashov A.V., Klyachko N., Khmelnitski Y.L., and Berezin I.V. Micellar enzymology. Eur. J. Biochem. 155 (1986) 453-468
-
(1986)
Eur. J. Biochem.
, vol.155
, pp. 453-468
-
-
Martinek, K.1
Levashov, A.V.2
Klyachko, N.3
Khmelnitski, Y.L.4
Berezin, I.V.5
-
10
-
-
0032100860
-
Mammalian base excision repair and DNA polymerase β
-
Wilson S.H. Mammalian base excision repair and DNA polymerase β. Mutat. Res. 407 (1998) 203-215
-
(1998)
Mutat. Res.
, vol.407
, pp. 203-215
-
-
Wilson, S.H.1
-
11
-
-
0034734386
-
Structural design of a eukaryotic DNA repair polymerase: DNA polymerase β
-
Beard W.A., and Wilson S.H. Structural design of a eukaryotic DNA repair polymerase: DNA polymerase β. Mutat. Res. 460 (2000) 231-244
-
(2000)
Mutat. Res.
, vol.460
, pp. 231-244
-
-
Beard, W.A.1
Wilson, S.H.2
-
13
-
-
0018846636
-
Sequencing end-labeled DNA with base-specific chemical cleavages
-
Maxam A.M., and Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65 (1980) 499-560
-
(1980)
Methods Enzymol.
, vol.65
, pp. 499-560
-
-
Maxam, A.M.1
Gilbert, W.2
-
14
-
-
0028803178
-
Purification and domain-mapping of mammalian DNA polymerase β
-
Beard W.A., and Wilson S.H. Purification and domain-mapping of mammalian DNA polymerase β. Methods Enzymol. 262 (1995) 98-107
-
(1995)
Methods Enzymol.
, vol.262
, pp. 98-107
-
-
Beard, W.A.1
Wilson, S.H.2
-
15
-
-
0043122944
-
ExPASy: the proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D., and Bairoch A. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31 (2003) 3784-3788
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
16
-
-
0032546560
-
Klenow fragment and DNA polymerase α-primase from calf thymus in water-in-oil microemulsions
-
Anarbaev R.O., Elepov I.B., and Lavrik O.I. Klenow fragment and DNA polymerase α-primase from calf thymus in water-in-oil microemulsions. Biochim. Biophys. Acta 1384 (1998) 315-324
-
(1998)
Biochim. Biophys. Acta
, vol.1384
, pp. 315-324
-
-
Anarbaev, R.O.1
Elepov, I.B.2
Lavrik, O.I.3
-
17
-
-
17844385546
-
DNA polymerase activity in water-structured and confined environment of reverse micelles
-
Anarbaev R.O., Khodyreva S.N., Zakharenko A.L., Rechkunova N.I., and Lavrik O.I. DNA polymerase activity in water-structured and confined environment of reverse micelles. J. Mol. Catal. B Enzym. 33 (2005) 29-34
-
(2005)
J. Mol. Catal. B Enzym.
, vol.33
, pp. 29-34
-
-
Anarbaev, R.O.1
Khodyreva, S.N.2
Zakharenko, A.L.3
Rechkunova, N.I.4
Lavrik, O.I.5
-
18
-
-
33645984577
-
Magnesium-induced assembly of a complete DNA polymerase catalytic complex
-
Batra V.K., Beard W.A., Shock D.D., Krahn J.M., Pedersen L.C., and Wilson S.H. Magnesium-induced assembly of a complete DNA polymerase catalytic complex. Structure 14 (2006) 757-766
-
(2006)
Structure
, vol.14
, pp. 757-766
-
-
Batra, V.K.1
Beard, W.A.2
Shock, D.D.3
Krahn, J.M.4
Pedersen, L.C.5
Wilson, S.H.6
-
20
-
-
33748501255
-
Solvation dynamics of coumarin 480 in reverse micelles. Slow relaxation of water molecules
-
Sarkar N., Das K., Datta A., Das S., and Bhattacharyya K. Solvation dynamics of coumarin 480 in reverse micelles. Slow relaxation of water molecules. J. Phys. Chem. 100 (1996) 10523-10527
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 10523-10527
-
-
Sarkar, N.1
Das, K.2
Datta, A.3
Das, S.4
Bhattacharyya, K.5
-
21
-
-
0000816363
-
Water immobilization at surfactant interfaces in reverse micelles
-
Riter R.E., Willard D.M., and Levinger N.E. Water immobilization at surfactant interfaces in reverse micelles. J. Phys. Chem. B 102 (1998) 2705-2714
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 2705-2714
-
-
Riter, R.E.1
Willard, D.M.2
Levinger, N.E.3
-
22
-
-
0001606665
-
Solvation dynamics of 4-aminophthalimide in water-in-oil microemulsion of triton X-100 in mixed solvents
-
Mandal D., Datta A., Pal S.K., and Bhattacharyya K. Solvation dynamics of 4-aminophthalimide in water-in-oil microemulsion of triton X-100 in mixed solvents. J. Phys. Chem. B 102 (1998) 9070-9073
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 9070-9073
-
-
Mandal, D.1
Datta, A.2
Pal, S.K.3
Bhattacharyya, K.4
-
23
-
-
0034323438
-
Slow dynamics of constrained water in complex geometries
-
Bhattacharyya K., and Bagchi B. Slow dynamics of constrained water in complex geometries. J. Phys. Chem. A 104 (2000) 10603-10613
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 10603-10613
-
-
Bhattacharyya, K.1
Bagchi, B.2
-
24
-
-
0033690126
-
Dielectric relaxation and solvation dynamics of water in complex chemical and biological systems
-
Nandi N., Bhattacharyya K., and Bagchi B. Dielectric relaxation and solvation dynamics of water in complex chemical and biological systems. Chem. Rev. 100 (2000) 2013-2046
-
(2000)
Chem. Rev.
, vol.100
, pp. 2013-2046
-
-
Nandi, N.1
Bhattacharyya, K.2
Bagchi, B.3
-
25
-
-
1242334281
-
Water solvation dynamics in the bulk and in the hydration layer of proteins and self-assemblies
-
Bagchi B. Water solvation dynamics in the bulk and in the hydration layer of proteins and self-assemblies. Annu. Rep. Prog. Chem. Sect. C 99 (2003) 127-175
-
(2003)
Annu. Rep. Prog. Chem. Sect. C
, vol.99
, pp. 127-175
-
-
Bagchi, B.1
-
26
-
-
0032061370
-
Spectral properties of the fluorescein in solvent-water mixtures: applications as a probe of hydrogen-bonding environments in biological systems
-
Klonis N., Clayton A.H., Voss Jr. E.W., and Sawyer W.H. Spectral properties of the fluorescein in solvent-water mixtures: applications as a probe of hydrogen-bonding environments in biological systems. Photochem. Photobiol. 67 (1998) 500-510
-
(1998)
Photochem. Photobiol.
, vol.67
, pp. 500-510
-
-
Klonis, N.1
Clayton, A.H.2
Voss Jr., E.W.3
Sawyer, W.H.4
-
27
-
-
0030010766
-
DNA polymerase β: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity
-
Werneburg B.G., Ahn J., Zhong X., Hondal R.J., Kraynov V.S., and Tsai M.D. DNA polymerase β: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity. Biochemistry 35 (1996) 7041-7050
-
(1996)
Biochemistry
, vol.35
, pp. 7041-7050
-
-
Werneburg, B.G.1
Ahn, J.2
Zhong, X.3
Hondal, R.J.4
Kraynov, V.S.5
Tsai, M.D.6
-
28
-
-
0030760966
-
DNA polymerase β: multiple conformational changes in the mechanism of catalysis
-
Zhong X., Patel S.S., Werneburg B.G., and Tsai M.D. DNA polymerase β: multiple conformational changes in the mechanism of catalysis. Biochemistry 36 (1997) 11891-11900
-
(1997)
Biochemistry
, vol.36
, pp. 11891-11900
-
-
Zhong, X.1
Patel, S.S.2
Werneburg, B.G.3
Tsai, M.D.4
-
29
-
-
0035793560
-
DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β. Implication for the identity of the rate-limiting conformational change
-
Vande Berg B.J., Beard W.A., and Wilson S.H. DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β. Implication for the identity of the rate-limiting conformational change. J. Biol. Chem. 276 (2001) 3408-3416
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 3408-3416
-
-
Vande Berg, B.J.1
Beard, W.A.2
Wilson, S.H.3
-
30
-
-
44349090420
-
Mismatched dNTP incorporation by DNA polymerase beta does not proceed via globally different conformational pathways
-
Tang K.H., Niebuhr M., Tung C.S., Chan H.C., Chou C.C., and Tsai M.D. Mismatched dNTP incorporation by DNA polymerase beta does not proceed via globally different conformational pathways. Nucleic Acids Res. 36 (2008) 2948-2957
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2948-2957
-
-
Tang, K.H.1
Niebuhr, M.2
Tung, C.S.3
Chan, H.C.4
Chou, C.C.5
Tsai, M.D.6
-
32
-
-
0037566670
-
Structural insights into the origins of DNA polymerase fidelity
-
Beard W.A., and Wilson S.H. Structural insights into the origins of DNA polymerase fidelity. Structure 11 (2003) 489-496
-
(2003)
Structure
, vol.11
, pp. 489-496
-
-
Beard, W.A.1
Wilson, S.H.2
-
33
-
-
0027179827
-
Short gap-filling synthesis by DNA polymerase beta is processive
-
Singhal R.K., and Wilson S.H. Short gap-filling synthesis by DNA polymerase beta is processive. J. Biol. Chem. 268 (1993) 15906-15911
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 15906-15911
-
-
Singhal, R.K.1
Wilson, S.H.2
-
34
-
-
0030783515
-
Increased activity and fidelity of DNA polymerase β on single-nucleotide gapped DNA
-
Chagovetz A.M., Sweasy J.B., and Preston B.P. Increased activity and fidelity of DNA polymerase β on single-nucleotide gapped DNA. J. Biol. Chem. 272 (1997) 27501-27504
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 27501-27504
-
-
Chagovetz, A.M.1
Sweasy, J.B.2
Preston, B.P.3
-
35
-
-
0344527720
-
The fidelity of DNA polymerase β during distributive and processive DNA synthesis
-
Osheroff W.P., Jung H.K., Beard W.A., Wilson S.H., and Kunkel T.A. The fidelity of DNA polymerase β during distributive and processive DNA synthesis. J. Biol. Chem. 274 (1999) 3642-3650
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 3642-3650
-
-
Osheroff, W.P.1
Jung, H.K.2
Beard, W.A.3
Wilson, S.H.4
Kunkel, T.A.5
-
36
-
-
33644632662
-
Thermodynamic and kinetic methods of analyses of protein-nucleic acid interactions. From simpler to more complex systems
-
Bujalowski W. Thermodynamic and kinetic methods of analyses of protein-nucleic acid interactions. From simpler to more complex systems. Chem. Rev. 106 (2006) 556-606
-
(2006)
Chem. Rev.
, vol.106
, pp. 556-606
-
-
Bujalowski, W.1
-
37
-
-
39449115715
-
Solution structures of 2:1 and 1:1 DNA polymerase-DNA complexes probed by ultracentrifugation and small-angle X-ray scattering
-
Tang K.H., Niebuhr M., Aulabaugh A., and Tsai M.D. Solution structures of 2:1 and 1:1 DNA polymerase-DNA complexes probed by ultracentrifugation and small-angle X-ray scattering. Nucleic Acids Res. 36 (2008) 849-860
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 849-860
-
-
Tang, K.H.1
Niebuhr, M.2
Aulabaugh, A.3
Tsai, M.D.4
-
38
-
-
0027572338
-
Mechanism-based strategies for protein thermostabilization
-
Mozhaev V. Mechanism-based strategies for protein thermostabilization. Trends Biotechnol. 11 (1993) 88-95
-
(1993)
Trends Biotechnol.
, vol.11
, pp. 88-95
-
-
Mozhaev, V.1
-
39
-
-
0026517617
-
Enzyme function in organic solvents
-
Gupta M. Enzyme function in organic solvents. Eur. J. Biochem. 203 (1992) 25-32
-
(1992)
Eur. J. Biochem.
, vol.203
, pp. 25-32
-
-
Gupta, M.1
-
40
-
-
0028825076
-
Biocatalyst behaviour in low-water systems
-
Bell G., Halling P., Moore B., Partridge J., and Rees G. Biocatalyst behaviour in low-water systems. Trends Biotechnol. 13 (1995) 468-473
-
(1995)
Trends Biotechnol.
, vol.13
, pp. 468-473
-
-
Bell, G.1
Halling, P.2
Moore, B.3
Partridge, J.4
Rees, G.5
-
41
-
-
0035843166
-
Improving enzymes by using them in organic solvents
-
Klibanov A.M. Improving enzymes by using them in organic solvents. Nature 409 (2001) 241-246
-
(2001)
Nature
, vol.409
, pp. 241-246
-
-
Klibanov, A.M.1
-
42
-
-
0001120334
-
Catalysis by water-soluble enzymes in organic solvents. Stabilization of enzyme against denaturation (inactivation) through their inclusion in reversed micelles
-
[in Russian]
-
Martinek K., Levashov A.V., Klyachko N.L., and Berezin I.V. Catalysis by water-soluble enzymes in organic solvents. Stabilization of enzyme against denaturation (inactivation) through their inclusion in reversed micelles. Dokl. Akad. Nauk SSSR 236 (1977) 920-923 [in Russian]
-
(1977)
Dokl. Akad. Nauk SSSR
, vol.236
, pp. 920-923
-
-
Martinek, K.1
Levashov, A.V.2
Klyachko, N.L.3
Berezin, I.V.4
-
43
-
-
37049014924
-
Kinetics of reactions catalyzed by enzymes in solutions of surfactants
-
Biasutti M.A., Abuin E.B., Silber J.J., Mariano Correa N., and Lissi E.A. Kinetics of reactions catalyzed by enzymes in solutions of surfactants. Adv. Colloid Interface Sci. 136 (2008) 1-24
-
(2008)
Adv. Colloid Interface Sci.
, vol.136
, pp. 1-24
-
-
Biasutti, M.A.1
Abuin, E.B.2
Silber, J.J.3
Mariano Correa, N.4
Lissi, E.A.5
-
44
-
-
0033652902
-
Reverse micelles as reaction media for lipases
-
Carvalhoa C.M.L., and Cabral J.M.S. Reverse micelles as reaction media for lipases. Biochimie 82 (2000) 1063-1085
-
(2000)
Biochimie
, vol.82
, pp. 1063-1085
-
-
Carvalhoa, C.M.L.1
Cabral, J.M.S.2
-
45
-
-
0036844979
-
Developments and trends in enzyme catalysis in nonconventional media
-
Krishna S.H. Developments and trends in enzyme catalysis in nonconventional media. Biotechnol. Adv. 20 (2002) 239-267
-
(2002)
Biotechnol. Adv.
, vol.20
, pp. 239-267
-
-
Krishna, S.H.1
-
46
-
-
0041821836
-
A perspective on enzyme catalysis
-
Benkovic S.J., and Hammes-Schiffer S. A perspective on enzyme catalysis. Science 301 (2003) 1196-1202
-
(2003)
Science
, vol.301
, pp. 1196-1202
-
-
Benkovic, S.J.1
Hammes-Schiffer, S.2
-
47
-
-
0036305753
-
Barrier passage and protein dynamics in enzymatically catalyzed reactions
-
Antoniou D., Caratzoulas S., Kalyanaraman C., Mincer J.S., and Schwartz S.D. Barrier passage and protein dynamics in enzymatically catalyzed reactions. Eur. J. Biochem. 269 (2002) 3103-3112
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3103-3112
-
-
Antoniou, D.1
Caratzoulas, S.2
Kalyanaraman, C.3
Mincer, J.S.4
Schwartz, S.D.5
-
48
-
-
1942437505
-
Orchestration of cooperative events in DNA synthesis and repair mechanism unraveled by transition path sampling of DNA polymerase beta's closing
-
Radhakrishnan R., and Schlick T. Orchestration of cooperative events in DNA synthesis and repair mechanism unraveled by transition path sampling of DNA polymerase beta's closing. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 5970-5975
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 5970-5975
-
-
Radhakrishnan, R.1
Schlick, T.2
-
49
-
-
0001143768
-
Molecular dynamics simulations of water in a spherical cavity
-
Zhang L., Davis H.T., Krollt D.M., and White H.S. Molecular dynamics simulations of water in a spherical cavity. J. Phys. Chem. 99 (1995) 2878-2884
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 2878-2884
-
-
Zhang, L.1
Davis, H.T.2
Krollt, D.M.3
White, H.S.4
-
50
-
-
0035822204
-
Dielectric constant of water confined in a nanocavity
-
Senapati S., and Chandra A. Dielectric constant of water confined in a nanocavity. J. Phys. Chem. B 105 (2001) 5106-5109
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 5106-5109
-
-
Senapati, S.1
Chandra, A.2
-
51
-
-
0031590110
-
Terahertz spectroscopy of water in inverse micelles
-
Mittleman D.M., Nuss M.C., and Colvin V.L. Terahertz spectroscopy of water in inverse micelles. Chem. Phys. Lett. 275 (1997) 332-338
-
(1997)
Chem. Phys. Lett.
, vol.275
, pp. 332-338
-
-
Mittleman, D.M.1
Nuss, M.C.2
Colvin, V.L.3
|