Human influenza A viruses isolated in South America: Genetic relations, adamantane resistance and vaccine strain match

Infection, Genetics and Evolution

Volumn 9, Issue 2, 2009, Pages 229-234

  Goñi, Natalia ^a,b   Russi, José ^c   Cristina, Juan ^a  

^a FACULTAD DE CIENCIAS   (Uruguay)

^b Centro Nacional de Referencia de Influenza   (Uruguay)

^c Ministerio de Salud Pública ^*  (Uruguay)

Author keywords

Adamantane resistance; Evolution; Influenza A virus; South America; Vaccine strains

Indexed keywords

ADAMANTANE; INFLUENZA VACCINE; INFLUENZA VIRUS HEMAGGLUTININ;

AMINO ACID SUBSTITUTION; ANIMAL CELL; ANTIVIRAL RESISTANCE; ARTICLE; CLADISTICS; CLINICAL ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC POLYMORPHISM; HUMAN; HUMAN TISSUE; INFLUENZA; INFLUENZA VIRUS A H3N2; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEASONAL VARIATION; SEQUENCE ALIGNMENT; SOUTH AMERICA; URUGUAY; VIRAL GENETICS; VIRUS ISOLATION; VIRUS STRAIN;

ADAMANTANE; AMINO ACID SEQUENCE; DRUG RESISTANCE, VIRAL; EPIDEMIOLOGY, MOLECULAR; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA, HUMAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; URUGUAY;

INFLUENZA A VIRUS;

EID: 59949094463     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2008.11.004     Document Type: Article

References (29)

1. Anisimova M., and Gascuel O. Approximate likelihood ratio test for branchs: a fast, accurate and powerful alternative. Syst. Biol. 55 (2006) 539-552
2. Bao Y., Bolotov P., Dernovoy D., Kiryutin B., Zaslavsky L., Tatusova T., Ostell J., and Lipman D. The influenza virus resource at the national center for biotechnology information. J. Virol. 82 (2008) 596-601
3. Barr I.G., Hart A.C., and Ianello P. Increased adamantane resistance in influenza A (H3) viruses in Australia and neighboring countries in 2005. Antiviral Res. 73 (2007) 112-117
4. Bright R.A., Shay D.K., and Shu B. Adamantane resistance among influenza A viruses isolated early during the 2005-2006 influenza season in the United States. JAMA 295 (2006) 891-893
5. Ellis J., Fleming D., and Zambon M. Multiplex reverse transcription-PCR for surveillance of Influenza A and B viruses in England and Wales in 1995 and 1996. J. Clin. Microbiol. 35 (1997) 2076-2082
6. Guindon S., Lethiec F., Duroux P., and Gascuel O. PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33 (2005) W557-W559 Web Server issue
7. Hata M., Tsuzuki M., Goto Y., Kumagai N., Harada M., Hashimoto M., Tanaka S., Sakae K., Kimura T., Minagawa H., and Miyazaki Y. High frequency of amantadine-resistant influenza A (H3N2) viruses in the 2005-2006 season and radip detection of amantadine-resistant influenza A (H3N2) viruses by MAMA-PCR. Jpn. J. Infect. Dis. 60 (2007) 202-204
8. Keane T.M., Creevey C.J., Pentony M.M., Naughton T.J., and McInerney J.O. Assessment of methods of amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol. Biol. 6 (2006) 29
9. Kumar S., Tamura K., and Nei M. MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5 (2004) 150-163
10. Lin Y.P., Gregory V., Bennett M., and Hay A. Recent changes among human influenza viruses. Virus Res. 103 (2004) 47-52
11. Nelson M.I., Simonsen L., Viboud C., Miller M.A., and Holmes E.C. Phylogenetic analysis reveals the global migration of seasonal Influenza A Viruses. PLoS Pathog. 3 (2007) e131 10.1371/journal.ppat.00300131
12. Nelson M.I., and Holmes E.C. The evolution of epidemic influenza. Nat. Rev. Gen. 8 (2007) 196-296
13. Neumann G., Brownlee G.G., Fodor E., and Kawaoka Y. Orthomyxovirus replication, transcription, and polyadelynation. Curr. Top. Microbiol. Immunol. 283 (2004) 121-143
14. Nguyen-Van-Tam J.S., and Hampson A.W. The epidemiology and clinical impact of pandemic influenza. Vaccine 21 (2003) 1762-1768
15. Nicholson K.G., Wood J.M., and Zambon M. Influenza. Lancet 362 (2003) 1733-1745
16. Pontoriero A.V., Baumeister E.G., Campos A.M., Savy V.L., Lin Y.P., and Hay A. Antigenic and genomic relation between human influenza viruses that circulated in Argentina in the period 1995-1999 and the corresponding vaccine components. J. Clin. Virol. 28 (2003) 130-140
17. Rambaut A., Pybus O.G., Nelson M.I., Viboud C., Taubenberger J.K., and Holmes E.C. The genomic and epidemiological dynamics of human influenza A virus. Nature 453 (2008) 615-619
18. Russell C.A., Jones T.C., Barr I.G., Cox N.J., Garten R.J., Gregory V., Gust I.D., Hampson A.W., Hay A.J., Hurt A.C., de Jong J.C., Kelso A., Klimov A.I., Kageyama T., Komadina N., Lapedes A.S., Lin Y.P., Mosterin A., Obuchi M., Odagiri T., Osterhaus A.D., Rimmelzwaan G.F., Shaw M.W., Skepner E., Stohr K., Tashiro M., Fouchier R.A., and Smith D.J. The global circulation of seasonal influenza A (H3N2) viruses. Science 320 (2008) 340-346
19. Saito R., Suzuki Y., Li D., Zaraket H., Sato I., Masaki H., Kawashima T., Hibi S., Sano Y., Shobugawa Y., Oguma T., and Suzuki H. Increased incidence of adamantane-resistant influenza A (H1N1) and A (H3N2) viruses during the 2006-2007 influenza season in Japan. J. Infect. Dis. 197 (2008) 630-632
20. Saito R., Li D., and Suzuki H. Amantadine-resistant influenza A (H3N2) virus in Japan, 2005-2006. N. Engl. J. Med. 356 (2007) 312-313
21. Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
22. Simonsen L., Viboud C., Grenfell B.T., Dushoff J., Jennings L., Smit M., Macken C., Hata M., Gog J., Miller M.A., and Holmes E.C. The genesis and spread of reassortment human influenza A/H3N2 viruses coferring adamantane resistance. Mol. Biol. Evol. 24 (2007) 1811-1820
23. Taubenberger J.K., and Morens D.M. 1918 influenza: the mother of all pandemics. Emerg. Infect. Dis. 12 (2006) 15-22
24. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res. 22 (1994) 4673-4680
25. Viboud C., Bjornstad O.N., Smith D.L., Simonsen L., and Miller M.A. Synchrony, waves, and spatial hierarchies in the spread of influenza. Science 312 (2006) 447-451
26. Viboud G., Boelle P.Y., Pakdaman K., Carrat F., and Valleron A.J. Influenza epidemics in the United States, France, and Australia, 1972-1997. Emerg. Infect. Dis. 10 (2004) 32-39
27. Wang C., Takeuchi K., Pinto L.H., and Lamb R.A. Ion channel activity of influenza A virus M2 protein: characterization of the amantadine block. J. Virol. 67 (1993) 5585-5594
28. World Health Organization, 2007. Acute respiratory infections: influenza. Available at: http://www.who.int/vaccine research/diseases/ari/en/.
29. World Health Organization. A revision of the system of nomenclature for influenza viruses: a WHO memorandum. Bull. World Health Organ. 58 (1980) 585-591