-
1
-
-
0036250811
-
Alu repeats and human genomic diversity
-
Batzer M.A., and Deininger P.L. Alu repeats and human genomic diversity. Nat. Rev. Genet. 3 (2002) 370-379
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 370-379
-
-
Batzer, M.A.1
Deininger, P.L.2
-
2
-
-
34247333809
-
Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome
-
Han K., Konkel M.K., Xing J., Wang H., Lee J., Meyer T.J., Huang C.T., Sandifer E., Hebert K., Barnes E.W., Hubley R., Miller W., Smit A.F., Ullmer B., and Batzer M.A. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science 316 (2007) 238-240
-
(2007)
Science
, vol.316
, pp. 238-240
-
-
Han, K.1
Konkel, M.K.2
Xing, J.3
Wang, H.4
Lee, J.5
Meyer, T.J.6
Huang, C.T.7
Sandifer, E.8
Hebert, K.9
Barnes, E.W.10
Hubley, R.11
Miller, W.12
Smit, A.F.13
Ullmer, B.14
Batzer, M.A.15
-
3
-
-
0026428975
-
Reverse transcriptase encoded by a human transposable element
-
Mathias S.L., Scott A.F., Kazazian Jr. H.H., Boeke J.D., and Gabriel A. Reverse transcriptase encoded by a human transposable element. Science 254 (1991) 1808-1810
-
(1991)
Science
, vol.254
, pp. 1808-1810
-
-
Mathias, S.L.1
Scott, A.F.2
Kazazian Jr., H.H.3
Boeke, J.D.4
Gabriel, A.5
-
4
-
-
34247344319
-
Retrotransposable elements and human disease
-
Callinan P., and Batzer M.A. Retrotransposable elements and human disease. Genome Dyn. 1 (2006) 104-115
-
(2006)
Genome Dyn.
, vol.1
, pp. 104-115
-
-
Callinan, P.1
Batzer, M.A.2
-
7
-
-
0009969062
-
Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
-
Feng Q., Moran J.V., Kazazian Jr. H.H., and Boeke J.D. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87 (1996) 905-916
-
(1996)
Cell
, vol.87
, pp. 905-916
-
-
Feng, Q.1
Moran, J.V.2
Kazazian Jr., H.H.3
Boeke, J.D.4
-
8
-
-
0035206024
-
Transcriptional activation of short interspersed elements by DNA-damaging agents
-
Rudin C.M., and Thompson C.B. Transcriptional activation of short interspersed elements by DNA-damaging agents. Genes Chromosomes Cancer 30 (2001) 64-71
-
(2001)
Genes Chromosomes Cancer
, vol.30
, pp. 64-71
-
-
Rudin, C.M.1
Thompson, C.B.2
-
9
-
-
0027450385
-
Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
-
Luan D.D., Korman M.H., Jakubczak J.L., and Eickbush T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72 (1993) 595-605
-
(1993)
Cell
, vol.72
, pp. 595-605
-
-
Luan, D.D.1
Korman, M.H.2
Jakubczak, J.L.3
Eickbush, T.H.4
-
10
-
-
23844510228
-
Multiple fates of L1 retrotransposition intermediates in cultured human cells
-
Gilbert N., Lutz S., Morrish T.A., and Moran J.V. Multiple fates of L1 retrotransposition intermediates in cultured human cells. Mol. Cell. Biol. 25 (2005) 7780-7795
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 7780-7795
-
-
Gilbert, N.1
Lutz, S.2
Morrish, T.A.3
Moran, J.V.4
-
11
-
-
0042856395
-
Alu: a parasite's parasite?
-
Schmid C.W. Alu: a parasite's parasite?. Nat. Genet. 35 (2003) 15-16
-
(2003)
Nat. Genet.
, vol.35
, pp. 15-16
-
-
Schmid, C.W.1
-
12
-
-
33744497802
-
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
-
Cordaux R., Udit S., Batzer M.A., and Feschotte C. Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 8101-8106
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 8101-8106
-
-
Cordaux, R.1
Udit, S.2
Batzer, M.A.3
Feschotte, C.4
-
13
-
-
13444294231
-
Meta-analysis of gross insertions causing human genetic disease: novel mutational mechanisms and the role of replication slippage
-
Chen J.M., Chuzhanova N., Stenson P.D., Ferec C., and Cooper D.N. Meta-analysis of gross insertions causing human genetic disease: novel mutational mechanisms and the role of replication slippage. Hum. Mutat. 25 (2005) 207-221
-
(2005)
Hum. Mutat.
, vol.25
, pp. 207-221
-
-
Chen, J.M.1
Chuzhanova, N.2
Stenson, P.D.3
Ferec, C.4
Cooper, D.N.5
-
15
-
-
0032531815
-
Does SINE evolution preclude Alu function?
-
Schmid C.W. Does SINE evolution preclude Alu function?. Nucleic Acids Res. 26 (1998) 4541-4550
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4541-4550
-
-
Schmid, C.W.1
-
16
-
-
0028970446
-
Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution
-
Kass D.H., Batzer M.A., and Deininger P.L. Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution. Mol. Cell. Biol. 15 (1995) 19-25
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 19-25
-
-
Kass, D.H.1
Batzer, M.A.2
Deininger, P.L.3
-
17
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran J.V., Holmes S.E., Naas T.P., DeBerardinis R.J., Boeke J.D., and Kazazian Jr. H.H. High frequency retrotransposition in cultured mammalian cells. Cell 87 (1996) 917-927
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
DeBerardinis, R.J.4
Boeke, J.D.5
Kazazian Jr., H.H.6
-
18
-
-
34547114770
-
Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome
-
Sen S.K., Huang C.T., Han K., and Batzer M.A. Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome. Nucleic Acids Res. 35 (2007) 3741-3751
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3741-3751
-
-
Sen, S.K.1
Huang, C.T.2
Han, K.3
Batzer, M.A.4
-
19
-
-
0036613245
-
DNA repair mediated by endonuclease-independent LINE-1 retrotransposition
-
Morrish T.A., Gilbert N., Myers J.S., Vincent B.J., Stamato T.D., Taccioli G.E., Batzer M.A., and Moran J.V. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition. Nat. Genet. 31 (2002) 159-165
-
(2002)
Nat. Genet.
, vol.31
, pp. 159-165
-
-
Morrish, T.A.1
Gilbert, N.2
Myers, J.S.3
Vincent, B.J.4
Stamato, T.D.5
Taccioli, G.E.6
Batzer, M.A.7
Moran, J.V.8
-
20
-
-
0023017248
-
The LINE-1 family of primates may encode a reverse transcriptase-like protein
-
Sakaki Y., Hattori M., Fujita A., Yoshioka K., Kuhara S., and Takenaka O. The LINE-1 family of primates may encode a reverse transcriptase-like protein. Cold Spring Harbor Symp. Quant. Biol. 51 Pt 1 (1986) 465-469
-
(1986)
Cold Spring Harbor Symp. Quant. Biol.
, vol.51
, Issue.PART 1
, pp. 465-469
-
-
Sakaki, Y.1
Hattori, M.2
Fujita, A.3
Yoshioka, K.4
Kuhara, S.5
Takenaka, O.6
-
21
-
-
0023948714
-
Unit-length line-1 transcripts in human teratocarcinoma cells
-
Skowronski J., Fanning T.G., and Singer M.F. Unit-length line-1 transcripts in human teratocarcinoma cells. Mol. Cell. Biol. 8 (1988) 1385-1397
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 1385-1397
-
-
Skowronski, J.1
Fanning, T.G.2
Singer, M.F.3
-
23
-
-
0035144498
-
Human L1 retrotransposition: cis preference versus trans complementation
-
Wei W., Gilbert N., Ooi S.L., Lawler J.F., Ostertag E.M., Kazazian H.H., Boeke J.D., and Moran J.V. Human L1 retrotransposition: cis preference versus trans complementation. Mol. Cell. Biol. 21 (2001) 1429-1439
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 1429-1439
-
-
Wei, W.1
Gilbert, N.2
Ooi, S.L.3
Lawler, J.F.4
Ostertag, E.M.5
Kazazian, H.H.6
Boeke, J.D.7
Moran, J.V.8
-
24
-
-
0041353551
-
LINE-mediated retrotransposition of marked Alu sequences
-
Dewannieux M., Esnault C., and Heidmann T. LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35 (2003) 41-48
-
(2003)
Nat. Genet.
, vol.35
, pp. 41-48
-
-
Dewannieux, M.1
Esnault, C.2
Heidmann, T.3
-
25
-
-
34248141710
-
Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase
-
Garcia-Perez J.L., Doucet A.J., Bucheton A., Moran J.V., and Gilbert N. Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase. Genome Res. 17 (2007) 602-611
-
(2007)
Genome Res.
, vol.17
, pp. 602-611
-
-
Garcia-Perez, J.L.1
Doucet, A.J.2
Bucheton, A.3
Moran, J.V.4
Gilbert, N.5
-
26
-
-
3042514196
-
Differential alu mobilization and polymorphism among the human and chimpanzee lineages
-
Hedges D.J., Callinan P.A., Cordaux R., Xing J., Barnes E., and Batzer M.A. Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res. 14 (2004) 1068-1075
-
(2004)
Genome Res.
, vol.14
, pp. 1068-1075
-
-
Hedges, D.J.1
Callinan, P.A.2
Cordaux, R.3
Xing, J.4
Barnes, E.5
Batzer, M.A.6
-
27
-
-
0022432381
-
A Chinese G gamma + (A gamma delta beta)zero thalassemia deletion: comparison to other deletions in the human beta-globin gene cluster and sequence analysis of the breakpoints
-
Mager D.L., Henthorn P.S., and Smithies O. A Chinese G gamma + (A gamma delta beta)zero thalassemia deletion: comparison to other deletions in the human beta-globin gene cluster and sequence analysis of the breakpoints. Nucleic Acids Res. 13 (1985) 6559-6575
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 6559-6575
-
-
Mager, D.L.1
Henthorn, P.S.2
Smithies, O.3
-
28
-
-
0024365538
-
Comparison of filler DNA at immune, nonimmune, and oncogenic rearrangements suggests multiple mechanisms of formation
-
Roth D.B., Chang X.B., and Wilson J.H. Comparison of filler DNA at immune, nonimmune, and oncogenic rearrangements suggests multiple mechanisms of formation. Mol. Cell. Biol. 9 (1989) 3049-3057
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 3049-3057
-
-
Roth, D.B.1
Chang, X.B.2
Wilson, J.H.3
-
29
-
-
1842665159
-
Genomic rearrangements in the CFTR gene: extensive allelic heterogeneity and diverse mutational mechanisms
-
Audrezet M.P., Chen J.M., Raguenes O., Chuzhanova N., Giteau K., Le Marechal C., Quere I., Cooper D.N., and Ferec C. Genomic rearrangements in the CFTR gene: extensive allelic heterogeneity and diverse mutational mechanisms. Hum. Mutat. 23 (2004) 343-357
-
(2004)
Hum. Mutat.
, vol.23
, pp. 343-357
-
-
Audrezet, M.P.1
Chen, J.M.2
Raguenes, O.3
Chuzhanova, N.4
Giteau, K.5
Le Marechal, C.6
Quere, I.7
Cooper, D.N.8
Ferec, C.9
-
30
-
-
0035476653
-
Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA
-
Lin Y., and Waldman A.S. Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA. Nucleic Acids Res. 29 (2001) 3975-3981
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3975-3981
-
-
Lin, Y.1
Waldman, A.S.2
-
31
-
-
33846021959
-
Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts
-
Ichiyanagi K., Nakajima R., Kajikawa M., and Okada N. Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts. Genome Res. 17 (2007) 33-41
-
(2007)
Genome Res.
, vol.17
, pp. 33-41
-
-
Ichiyanagi, K.1
Nakajima, R.2
Kajikawa, M.3
Okada, N.4
-
32
-
-
0030749338
-
BC1 RNA, the transcript from a master gene for ID element amplification, is able to prime its own reverse transcription
-
Shen M.R., Brosius J., and Deininger P.L. BC1 RNA, the transcript from a master gene for ID element amplification, is able to prime its own reverse transcription. Nucleic Acids Res. 25 (1997) 1641-1648
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1641-1648
-
-
Shen, M.R.1
Brosius, J.2
Deininger, P.L.3
-
33
-
-
0342313559
-
Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
-
Pickeral O.K., Makalowski W., Boguski M.S., and Boeke J.D. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. Genome Res. 10 (2000) 411-415
-
(2000)
Genome Res.
, vol.10
, pp. 411-415
-
-
Pickeral, O.K.1
Makalowski, W.2
Boguski, M.S.3
Boeke, J.D.4
-
34
-
-
0038799991
-
Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae
-
Paques F., and Haber J.E. Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63 (1999) 349-404
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 349-404
-
-
Paques, F.1
Haber, J.E.2
-
35
-
-
0035215372
-
Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion
-
Ovchinnikov I., Troxel A.B., and Swergold G.D. Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion. Genome Res. 11 (2001) 2050-2058
-
(2001)
Genome Res.
, vol.11
, pp. 2050-2058
-
-
Ovchinnikov, I.1
Troxel, A.B.2
Swergold, G.D.3
-
36
-
-
33744807443
-
DNA structures, repeat expansions and human hereditary disorders
-
Mirkin S.M. DNA structures, repeat expansions and human hereditary disorders. Curr. Opin. Struct. Biol. 16 (2006) 351-358
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 351-358
-
-
Mirkin, S.M.1
-
37
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
38
-
-
0030759896
-
New insights into the mechanisms of RNA recombination
-
Nagy P.D., and Simon A.E. New insights into the mechanisms of RNA recombination. Virology 235 (1997) 1-9
-
(1997)
Virology
, vol.235
, pp. 1-9
-
-
Nagy, P.D.1
Simon, A.E.2
-
39
-
-
33846704345
-
Inviting instability: transposable elements, double-strand breaks, and the maintenance of genome integrity
-
Hedges D.J., and Deininger P.L. Inviting instability: transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutat. Res. 616 (2007) 46-59
-
(2007)
Mutat. Res.
, vol.616
, pp. 46-59
-
-
Hedges, D.J.1
Deininger, P.L.2
-
40
-
-
0028078579
-
Mechanisms of overlap formation in nonhomologous DNA end joining
-
Pfeiffer P., Thode S., Hancke J., and Vielmetter W. Mechanisms of overlap formation in nonhomologous DNA end joining. Mol. Cell. Biol. 14 (1994) 888-895
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 888-895
-
-
Pfeiffer, P.1
Thode, S.2
Hancke, J.3
Vielmetter, W.4
-
41
-
-
22344444224
-
Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′- end attachment requiring microhomology-mediated end-joining
-
Zingler N., Willhoeft U., Brose H.P., Schoder V., Jahns T., Hanschmann K.M., Morrish T.A., Lower J., and Schumann G.G. Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′- end attachment requiring microhomology-mediated end-joining. Genome Res. 15 (2005) 780-789
-
(2005)
Genome Res.
, vol.15
, pp. 780-789
-
-
Zingler, N.1
Willhoeft, U.2
Brose, H.P.3
Schoder, V.4
Jahns, T.5
Hanschmann, K.M.6
Morrish, T.A.7
Lower, J.8
Schumann, G.G.9
-
42
-
-
23044500870
-
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages
-
Han K., Sen S.K., Wang J., Callinan P.A., Lee J., Cordaux R., Liang P., and Batzer M.A. Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Res. 33 (2005) 4040-4052
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4040-4052
-
-
Han, K.1
Sen, S.K.2
Wang, J.3
Callinan, P.A.4
Lee, J.5
Cordaux, R.6
Liang, P.7
Batzer, M.A.8
-
43
-
-
17444413395
-
Alu Retrotransposition-mediated Deletion
-
Callinan P.A., Wang J., Herke S.W., Garber R.K., Liang P., and Batzer M.A. Alu Retrotransposition-mediated Deletion. J. Mol. Biol. 348 (2005) 791-800
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 791-800
-
-
Callinan, P.A.1
Wang, J.2
Herke, S.W.3
Garber, R.K.4
Liang, P.5
Batzer, M.A.6
-
44
-
-
0032559061
-
Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
-
Cost G.J., and Boeke J.D. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry 37 (1998) 18081-18093
-
(1998)
Biochemistry
, vol.37
, pp. 18081-18093
-
-
Cost, G.J.1
Boeke, J.D.2
-
45
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
Rhesus Macaque Genome Sequencing and Analysis Consortium
-
Rhesus Macaque Genome Sequencing and Analysis Consortium. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316 (2007) 222-234
-
(2007)
Science
, vol.316
, pp. 222-234
-
-
-
46
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 12 (2002) 656-664
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
47
-
-
0003308786
-
Molecular archeology of L1 insertions in the human genome
-
research0052
-
Szak S.T., Pickeral O.K., Makalowski W., Boguski M.S., Landsman D., and Boeke J.D. Molecular archeology of L1 insertions in the human genome. Genome Biol. 3 (2002) research0052
-
(2002)
Genome Biol.
, vol.3
-
-
Szak, S.T.1
Pickeral, O.K.2
Makalowski, W.3
Boguski, M.S.4
Landsman, D.5
Boeke, J.D.6
-
48
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
TCSAC
-
TCSAC. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437 (2005) 69-87
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
49
-
-
59849111186
-
-
A. Smit, R. Hubley, P. Green, RepeatMasker Open-3.0. (1996-2004).
-
A. Smit, R. Hubley, P. Green, RepeatMasker Open-3.0. (1996-2004).
-
-
-
-
50
-
-
35948983427
-
Alu recombination-mediated structural deletions in the chimpanzee genome
-
Han K., Lee J., Meyer T.J., Wang J., Sen S.K., Srikanta D., Liang P., and Batzer M.A. Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genet. 3 (2007) 1939-1949
-
(2007)
PLoS Genet.
, vol.3
, pp. 1939-1949
-
-
Han, K.1
Lee, J.2
Meyer, T.J.3
Wang, J.4
Sen, S.K.5
Srikanta, D.6
Liang, P.7
Batzer, M.A.8
|