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Volumn 93, Issue 3, 2009, Pages 205-212

An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair

Author keywords

Alu elements; Double strand break repair; Endonuclease independent insertion

Indexed keywords

DOUBLE STRANDED DNA; ENDONUCLEASE;

EID: 59849116654     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.09.016     Document Type: Article
Times cited : (31)

References (50)
  • 1
    • 0036250811 scopus 로고    scopus 로고
    • Alu repeats and human genomic diversity
    • Batzer M.A., and Deininger P.L. Alu repeats and human genomic diversity. Nat. Rev. Genet. 3 (2002) 370-379
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 370-379
    • Batzer, M.A.1    Deininger, P.L.2
  • 4
    • 34247344319 scopus 로고    scopus 로고
    • Retrotransposable elements and human disease
    • Callinan P., and Batzer M.A. Retrotransposable elements and human disease. Genome Dyn. 1 (2006) 104-115
    • (2006) Genome Dyn. , vol.1 , pp. 104-115
    • Callinan, P.1    Batzer, M.A.2
  • 7
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng Q., Moran J.V., Kazazian Jr. H.H., and Boeke J.D. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87 (1996) 905-916
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian Jr., H.H.3    Boeke, J.D.4
  • 8
    • 0035206024 scopus 로고    scopus 로고
    • Transcriptional activation of short interspersed elements by DNA-damaging agents
    • Rudin C.M., and Thompson C.B. Transcriptional activation of short interspersed elements by DNA-damaging agents. Genes Chromosomes Cancer 30 (2001) 64-71
    • (2001) Genes Chromosomes Cancer , vol.30 , pp. 64-71
    • Rudin, C.M.1    Thompson, C.B.2
  • 9
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
    • Luan D.D., Korman M.H., Jakubczak J.L., and Eickbush T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72 (1993) 595-605
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 10
    • 23844510228 scopus 로고    scopus 로고
    • Multiple fates of L1 retrotransposition intermediates in cultured human cells
    • Gilbert N., Lutz S., Morrish T.A., and Moran J.V. Multiple fates of L1 retrotransposition intermediates in cultured human cells. Mol. Cell. Biol. 25 (2005) 7780-7795
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 7780-7795
    • Gilbert, N.1    Lutz, S.2    Morrish, T.A.3    Moran, J.V.4
  • 11
    • 0042856395 scopus 로고    scopus 로고
    • Alu: a parasite's parasite?
    • Schmid C.W. Alu: a parasite's parasite?. Nat. Genet. 35 (2003) 15-16
    • (2003) Nat. Genet. , vol.35 , pp. 15-16
    • Schmid, C.W.1
  • 12
    • 33744497802 scopus 로고    scopus 로고
    • Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
    • Cordaux R., Udit S., Batzer M.A., and Feschotte C. Birth of a chimeric primate gene by capture of the transposase gene from a mobile element. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 8101-8106
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 8101-8106
    • Cordaux, R.1    Udit, S.2    Batzer, M.A.3    Feschotte, C.4
  • 13
    • 13444294231 scopus 로고    scopus 로고
    • Meta-analysis of gross insertions causing human genetic disease: novel mutational mechanisms and the role of replication slippage
    • Chen J.M., Chuzhanova N., Stenson P.D., Ferec C., and Cooper D.N. Meta-analysis of gross insertions causing human genetic disease: novel mutational mechanisms and the role of replication slippage. Hum. Mutat. 25 (2005) 207-221
    • (2005) Hum. Mutat. , vol.25 , pp. 207-221
    • Chen, J.M.1    Chuzhanova, N.2    Stenson, P.D.3    Ferec, C.4    Cooper, D.N.5
  • 15
    • 0032531815 scopus 로고    scopus 로고
    • Does SINE evolution preclude Alu function?
    • Schmid C.W. Does SINE evolution preclude Alu function?. Nucleic Acids Res. 26 (1998) 4541-4550
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4541-4550
    • Schmid, C.W.1
  • 16
    • 0028970446 scopus 로고
    • Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution
    • Kass D.H., Batzer M.A., and Deininger P.L. Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution. Mol. Cell. Biol. 15 (1995) 19-25
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 19-25
    • Kass, D.H.1    Batzer, M.A.2    Deininger, P.L.3
  • 18
    • 34547114770 scopus 로고    scopus 로고
    • Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome
    • Sen S.K., Huang C.T., Han K., and Batzer M.A. Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome. Nucleic Acids Res. 35 (2007) 3741-3751
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3741-3751
    • Sen, S.K.1    Huang, C.T.2    Han, K.3    Batzer, M.A.4
  • 21
    • 0023948714 scopus 로고
    • Unit-length line-1 transcripts in human teratocarcinoma cells
    • Skowronski J., Fanning T.G., and Singer M.F. Unit-length line-1 transcripts in human teratocarcinoma cells. Mol. Cell. Biol. 8 (1988) 1385-1397
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 1385-1397
    • Skowronski, J.1    Fanning, T.G.2    Singer, M.F.3
  • 22
  • 24
    • 0041353551 scopus 로고    scopus 로고
    • LINE-mediated retrotransposition of marked Alu sequences
    • Dewannieux M., Esnault C., and Heidmann T. LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 35 (2003) 41-48
    • (2003) Nat. Genet. , vol.35 , pp. 41-48
    • Dewannieux, M.1    Esnault, C.2    Heidmann, T.3
  • 25
    • 34248141710 scopus 로고    scopus 로고
    • Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase
    • Garcia-Perez J.L., Doucet A.J., Bucheton A., Moran J.V., and Gilbert N. Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase. Genome Res. 17 (2007) 602-611
    • (2007) Genome Res. , vol.17 , pp. 602-611
    • Garcia-Perez, J.L.1    Doucet, A.J.2    Bucheton, A.3    Moran, J.V.4    Gilbert, N.5
  • 26
    • 3042514196 scopus 로고    scopus 로고
    • Differential alu mobilization and polymorphism among the human and chimpanzee lineages
    • Hedges D.J., Callinan P.A., Cordaux R., Xing J., Barnes E., and Batzer M.A. Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res. 14 (2004) 1068-1075
    • (2004) Genome Res. , vol.14 , pp. 1068-1075
    • Hedges, D.J.1    Callinan, P.A.2    Cordaux, R.3    Xing, J.4    Barnes, E.5    Batzer, M.A.6
  • 27
    • 0022432381 scopus 로고
    • A Chinese G gamma + (A gamma delta beta)zero thalassemia deletion: comparison to other deletions in the human beta-globin gene cluster and sequence analysis of the breakpoints
    • Mager D.L., Henthorn P.S., and Smithies O. A Chinese G gamma + (A gamma delta beta)zero thalassemia deletion: comparison to other deletions in the human beta-globin gene cluster and sequence analysis of the breakpoints. Nucleic Acids Res. 13 (1985) 6559-6575
    • (1985) Nucleic Acids Res. , vol.13 , pp. 6559-6575
    • Mager, D.L.1    Henthorn, P.S.2    Smithies, O.3
  • 28
    • 0024365538 scopus 로고
    • Comparison of filler DNA at immune, nonimmune, and oncogenic rearrangements suggests multiple mechanisms of formation
    • Roth D.B., Chang X.B., and Wilson J.H. Comparison of filler DNA at immune, nonimmune, and oncogenic rearrangements suggests multiple mechanisms of formation. Mol. Cell. Biol. 9 (1989) 3049-3057
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 3049-3057
    • Roth, D.B.1    Chang, X.B.2    Wilson, J.H.3
  • 30
    • 0035476653 scopus 로고    scopus 로고
    • Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA
    • Lin Y., and Waldman A.S. Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA. Nucleic Acids Res. 29 (2001) 3975-3981
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3975-3981
    • Lin, Y.1    Waldman, A.S.2
  • 31
    • 33846021959 scopus 로고    scopus 로고
    • Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts
    • Ichiyanagi K., Nakajima R., Kajikawa M., and Okada N. Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts. Genome Res. 17 (2007) 33-41
    • (2007) Genome Res. , vol.17 , pp. 33-41
    • Ichiyanagi, K.1    Nakajima, R.2    Kajikawa, M.3    Okada, N.4
  • 32
    • 0030749338 scopus 로고    scopus 로고
    • BC1 RNA, the transcript from a master gene for ID element amplification, is able to prime its own reverse transcription
    • Shen M.R., Brosius J., and Deininger P.L. BC1 RNA, the transcript from a master gene for ID element amplification, is able to prime its own reverse transcription. Nucleic Acids Res. 25 (1997) 1641-1648
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1641-1648
    • Shen, M.R.1    Brosius, J.2    Deininger, P.L.3
  • 33
    • 0342313559 scopus 로고    scopus 로고
    • Frequent human genomic DNA transduction driven by LINE-1 retrotransposition
    • Pickeral O.K., Makalowski W., Boguski M.S., and Boeke J.D. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. Genome Res. 10 (2000) 411-415
    • (2000) Genome Res. , vol.10 , pp. 411-415
    • Pickeral, O.K.1    Makalowski, W.2    Boguski, M.S.3    Boeke, J.D.4
  • 34
    • 0038799991 scopus 로고    scopus 로고
    • Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae
    • Paques F., and Haber J.E. Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63 (1999) 349-404
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 349-404
    • Paques, F.1    Haber, J.E.2
  • 35
    • 0035215372 scopus 로고    scopus 로고
    • Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion
    • Ovchinnikov I., Troxel A.B., and Swergold G.D. Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion. Genome Res. 11 (2001) 2050-2058
    • (2001) Genome Res. , vol.11 , pp. 2050-2058
    • Ovchinnikov, I.1    Troxel, A.B.2    Swergold, G.D.3
  • 36
    • 33744807443 scopus 로고    scopus 로고
    • DNA structures, repeat expansions and human hereditary disorders
    • Mirkin S.M. DNA structures, repeat expansions and human hereditary disorders. Curr. Opin. Struct. Biol. 16 (2006) 351-358
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 351-358
    • Mirkin, S.M.1
  • 38
    • 0030759896 scopus 로고    scopus 로고
    • New insights into the mechanisms of RNA recombination
    • Nagy P.D., and Simon A.E. New insights into the mechanisms of RNA recombination. Virology 235 (1997) 1-9
    • (1997) Virology , vol.235 , pp. 1-9
    • Nagy, P.D.1    Simon, A.E.2
  • 39
    • 33846704345 scopus 로고    scopus 로고
    • Inviting instability: transposable elements, double-strand breaks, and the maintenance of genome integrity
    • Hedges D.J., and Deininger P.L. Inviting instability: transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutat. Res. 616 (2007) 46-59
    • (2007) Mutat. Res. , vol.616 , pp. 46-59
    • Hedges, D.J.1    Deininger, P.L.2
  • 40
    • 0028078579 scopus 로고
    • Mechanisms of overlap formation in nonhomologous DNA end joining
    • Pfeiffer P., Thode S., Hancke J., and Vielmetter W. Mechanisms of overlap formation in nonhomologous DNA end joining. Mol. Cell. Biol. 14 (1994) 888-895
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 888-895
    • Pfeiffer, P.1    Thode, S.2    Hancke, J.3    Vielmetter, W.4
  • 41
    • 22344444224 scopus 로고    scopus 로고
    • Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′- end attachment requiring microhomology-mediated end-joining
    • Zingler N., Willhoeft U., Brose H.P., Schoder V., Jahns T., Hanschmann K.M., Morrish T.A., Lower J., and Schumann G.G. Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′- end attachment requiring microhomology-mediated end-joining. Genome Res. 15 (2005) 780-789
    • (2005) Genome Res. , vol.15 , pp. 780-789
    • Zingler, N.1    Willhoeft, U.2    Brose, H.P.3    Schoder, V.4    Jahns, T.5    Hanschmann, K.M.6    Morrish, T.A.7    Lower, J.8    Schumann, G.G.9
  • 42
  • 44
    • 0032559061 scopus 로고    scopus 로고
    • Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure
    • Cost G.J., and Boeke J.D. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry 37 (1998) 18081-18093
    • (1998) Biochemistry , vol.37 , pp. 18081-18093
    • Cost, G.J.1    Boeke, J.D.2
  • 45
    • 34247352040 scopus 로고    scopus 로고
    • Evolutionary and biomedical insights from the rhesus macaque genome
    • Rhesus Macaque Genome Sequencing and Analysis Consortium
    • Rhesus Macaque Genome Sequencing and Analysis Consortium. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316 (2007) 222-234
    • (2007) Science , vol.316 , pp. 222-234
  • 46
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 12 (2002) 656-664
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 48
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • TCSAC
    • TCSAC. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437 (2005) 69-87
    • (2005) Nature , vol.437 , pp. 69-87
  • 49
    • 59849111186 scopus 로고    scopus 로고
    • A. Smit, R. Hubley, P. Green, RepeatMasker Open-3.0. (1996-2004).
    • A. Smit, R. Hubley, P. Green, RepeatMasker Open-3.0. (1996-2004).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.