Internal repetition and intraindividual variation in the rDNA ITS1 of the anopheles punctulatus group (Diptera: Culicidae): Multiple units and rates of turnover

Journal of Molecular Evolution

Volumn 68, Issue 1, 2009, Pages 66-79

  Bower, James E ^a   Cooper, Robert D ^b   Beebe, Nigel W ^c,d  

^a UNIVERSITY OF WOLLONGONG   (Australia)

^b AUSTRALIAN ARMY MALARIA INSTITUTE   (Australia)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d CSIRO   (Australia)

Author keywords

Anopheles punctulatus; Concerted evolution; DNA turnover; ITS1; RDNA

Indexed keywords

ANIMALS; ANOPHELES; BASE SEQUENCE; DNA, RIBOSOMAL; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RECOMBINATION, GENETIC; REPETITIVE SEQUENCES, NUCLEIC ACID;

ANOPHELES PUNCTULATUS; CULICIDAE; DIPTERA;

EID: 59749106748     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-008-9188-z     Document Type: Article

References (48)

1. KT Averbeck TH Eickbush 2005 Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus Genetics 171 1837 1846
2. NW Beebe RD Cooper 2002 Distribution and evolution of the Anopheles punctulatus group (Diptera: Culicidae) in Australia and Papua New Guinea Int J Parasitol 32 563 574
3. NW Beebe A Saul 1995 Discrimination of all members of the Anopheles punctulatus complex by polymerase chain reaction-restriction fragment length polymorphism analysis Am J Trop Med Hyg 53 478 481
4. NW Beebe JT Ellis RD Cooper A Saul 1999 DNA sequence analysis of the ribosomal DNA ITS2 region for the Anopheles punctulatus group of mosquitoes Insect Mol Biol 8 381 390
5. NW Beebe RD Cooper DA Morrison JT Ellis 2000 A phylogenetic study of the Anopheles punctulatus group of malaria vectors comparing rDNA sequence alignments derived from the mitochondrial and nuclear small ribosomal subunits Mol Phylogenet Evol 17 430 436
6. NW Beebe RD Cooper DH Foley JT Ellis 2000 Populations of the southwest Pacific malaria vector Anopheles farauti s.s. revealed by ribosomal DNA transcribed spacer polymorphisms Heredity 84 244 253
7. J Brosius 2003 The contribution of RNAs and retroposition to evolutionary novelties Genetica 118 99 116
8. FH Collins SM Paskewitz V Finnerty 1989 Ribosomal RNA genes of the Anopheles gambiae species complex Adv Dis Vector Res 6 2 28
9. P De Rijk J Wuyts R De Wachter 2003 RnaViz 2: an improved representation of RNA secondary structure Bioinformatics 19 299 300
10. GA Dover 1989 Linkage disequilibrium and molecular drive in the rDNA gene family Genetics 122 249 252
11. GA Dover 2000 How genomic and developmental dynamics affect evolutionary processes Bio Essays 22 1153 1159
12. GA Dover 2002 Molecular drive Trends Genet 18 587 589
13. S Fabry A Köhler AW Coleman 1999 Intraspecies analysis: comparison of ITS sequence data and gene intron sequence data with breeding data for a worldwide collection of Gonium pectorale J Mol Evol 48 94 101
14. TL Fairley CW Kilpatrick JE Conn 2005 Intragenomic heterogeneity of internal transcribed spacer rDNA in neotropical malaria vector Anopheles aquasalis (Diptera: Culicidae) J Med Entomol 42 795 800
15. P Famà JL Olsen WT Stam G Procaccini 2000 High levels of intra- and inter-individual polymorphism in the rDNA ITS1 of Caulerpa racemosa (Chlorophyta) Eur J Phycol 35 349 356
16. WM Fitch 2000 Homology: a personal view on some of the problems Trends Genet 16 227 231
17. DH Foley JH Bryan D Yeates A Saul 1998 Evolution and systematics of Anopheles: insights from a molecular phylogeny of Australian mosquitoes Mol Phylogenet Evol 9 262 275
18. DS Gernandt A Liston D Piñero 2001 Variation in the nrDNA ITS of Pinus subsection Cembroides: implications for molecular systematic studies of pine species complexes Mol Phylogenet Evol 21 449 467
19. IL Gonzalez JE Sylvester 2001 Human rDNA: evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes Genomics 73 255 263
20. Graur D, Li W-H (2000) Fundamentals of molecular evolution. Sinauer Associates, Sunderland, MA
21. D Harpke A Peterson 2006 Non-concerted ITS evolution in Mammillaria (Cactaceae) Mol Phylogenet Evol 41 579 593
22. DJ Harris KA Crandall 2000 Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies Mol Biol Evol 17 284 291
23. J Jakubczak WD Burke TH Eickbush 1991 Retrotransposable elements R1 and R2 interrupt the rDNA genes of most insects Proc Natl Acad Sci USA 88 3295 3299
24. M Kimura T Ohta 1979 Population genetics of multigene family with special reference to decrease of genetic correlation with distance between gene members on a chromosome Proc Natl Acad Sci USA 76 4001 4005
25. C Li RC Wilkerson 2007 Intragenomic rDNA ITS2 variation in the neotropical Anopheles (Nyssorhynchus) albitarsis complex (Diptera: Culicidae) J Hered 98 51 59
26. A Marchi E Pili 1994 Ribosomal RNA genes in mosquitoes: localization by fluorescence in situ hybridization (FISH) Heredity 72 599 605
27. M Mateos TA Markow 2005 Ribosomal intergenic spacer (IGS) length variation across the Drosophilinae (Diptera: Drosophilidae) BMC Evol Biol 5 46 59
28. LM Mertz A Rashtchian 1994 Nucleotide imbalance and polymerase chain reaction: effects on DNA amplification and synthesis of high specific activity radiolabeled DNA probes Anal Biochem 221 160 165
29. BR Miller MB Crabtree HM Savage 1996 Phylogeny of fourteen Culex mosquito species, including the Culex pipiens complex, inferred from the internal transcribed spacers of ribosomal DNA Insect Mol Biol 5 93 107
30. M Nei AP Rooney 2005 Concerted and birth-and-death evolution of multigene families Annu Rev Genet 39 121 152
31. Ohno S (1970) Evolution by gene duplication. Springer, Berlin
32. T Ohta GA Dover 1983 Population genetics of multigene families that are dispersed into two or more chromosomes Proc Natl Acad Sci USA 80 4079 4083
33. SM Paskewitz DM Wesson FH Collins 1993 The internal transcribed spacers of ribosomal DNA in five members of the Anopheles gambiae species complex Insect Mol Biol 2 247 257
34. D Posada KA Crandall 1998 MODELTEST: testing the model of DNA substitution Bioinformatics 14 817 818
35. A Reineke P Karlovsky CPW Zebitz 1998 Preparation and purification of DNA from insects for AFLP analysis Insect Mol Biol 7 95 99
36. F Rodríguez JF Oliver A Marín JR Medina 1990 The general stochastic model of nucleotide substitution J Theor Biol 142 485 501
37. MA Rodríguez-Pérez CA Núñez-González C Lizarazo-Ortega A Sánchez-Valera MC Wooten TR Unnasch 2006 Analysis of genetic variation in ribosomal DNA internal transcribed spacer and the NADH dehydrogenase subunit 4 mitochondrial genes of the onchocerciasis vector Similium ochraceum J Med Entomol 43 701 706
38. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
39. MJ Sanderson JJ Doyle 1992 Reconstruction of organismal and gene phylogenies from data on multigene families: concerted evolution, homoplasy, and confidence Syst Biol 41 4 17
40. C Schlötterer D Tautz 1994 Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution Curr Biol 4 777 783
41. ER Schmidt DH Foley GF Hartel GM Williams JH Bryan 2001 Descriptions of the Anopheles (Cellia) farauti complex of sibling species (Diptera: Culicidae) in Australia Bull Entomol Res 91 389 410
42. ER Schmidt DH Foley H Bugoro JH Bryan 2003 A morphological study of the Anopheles punctulatus group (Diptera: Culicidae) in the Solomon Islands, with a description of Anopheles (Cellia) irenicus Schmidt sp.n. Bull Entomol Res 93 515 526
43. Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, MA
44. J Tang L Toè C Black TR Unnasch 1994 Intra-specific heterogeneity of the rDNA internal transcribed spacer in the Simulium damnosum (Diptera: Simuliidae) complex Mol Biol Evol 13 244 252
45. TA Tatusova TL Madden 1999 Blast 2 sequences, a new tool for comparing protein and nucleotide sequences FEMS Microbiol Lett 174 247 250
46. L van Herwerden D Blair T Agatsuma 1999 Intra- and interindividual variation in ITS1 of Paragonimus westermani (Trematoda: Digenea) and related species: implications for phylogenetic studies Mol Phylogenet Evol 12 67 73
47. JHG von der Schulenburg JM Hancock A Pagnamenta JJ Sloggett MEN Majerus 2001 Extreme length and length variation in the first ribosomal internal transcribed spacer of ladybird beetles (Coleoptera: Coccinellidae) Mol Biol Evol 18 648 660
48. M Zuker 2003 Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res 31 3406 3415