Physiological responses of Pseudomonas putida to formaldehyde during detoxification

Microbial Biotechnology

Volumn 1, Issue 2, 2008, Pages 158-169

  Roca, Amalia ^a   Rodríguez Herva, José Juan ^a   Duque, Estrella ^a   Ramos, Juan L ^a,b  

^a CSIC   (Spain)

^b UNIVERSITY OF HUELVA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; FORMALDEHYDE; FORMALDEHYDE DEHYDROGENASE; FORMATE DEHYDROGENASE; GLUTATHIONE; HEAT SHOCK PROTEIN; MUTANT PROTEIN; REGULATOR PROTEIN;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERICIDAL ACTIVITY; CHEMICAL REACTION; CONTROLLED STUDY; DETOXIFICATION; DNA DAMAGE; DNA REPAIR; GENE EXPRESSION; GENE INSERTION; GENE MUTATION; GROWTH INHIBITION; NONHUMAN; OXIDATIVE STRESS; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PSEUDOMONAS PUTIDA; STOICHIOMETRY;

BACTERIAL PROTEINS; FORMALDEHYDE; GENE EXPRESSION REGULATION, BACTERIAL; PSEUDOMONAS PUTIDA;

PSEUDOMONAS PUTIDA;

EID: 59649117138     PISSN: 17517907     EISSN: 17517915     Source Type: Journal    
DOI: 10.1111/j.1751-7915.2007.00014.x     Document Type: Article

References (52)

1. Abril, M.A., Michán, C., Timmis, K.N., and Ramos, J.L. (1989) Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J Bacteriol 171: 6782-6790.
2. De Lorenzo, V., Herrero, M., Jakubzik, U., and Timmis, K.N. (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J Bacteriol 172: 6568-6572.
3. Domínguez-Cuevas, P., González-Pastor, J.E., Marqués, S., Ramos, J.L., and de Lorenzo, V. (2006) Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J Biol Chem 281: 11981-11991.
4. Duncan, A.J., Bott, C.B., Terlesky, K.C., and Love, N.G. (2002) Detection of GroEL in activated sludge: a model for detection of stress. Lett Appl Microbiol 30: 28-32.
5. Duque, E., Molina-Henares, A.J., de la Torre, J., Molina-Henares, M.A., del Castillo, T., Lam, J., and Ramos, J.L. (2007a) Towards a genome-wide mutant library of Pseudomonas putida strain kt2440. In Pseudomonas, Vol. V: A Model System in Biology. Ramos, J.L., and Filloux, A. (eds). Dorchester, The Netherlands: Springer, pp. 227-251.
6. Duque, E., Rodríguez-Herva, J.J., de la Torre, J., Domínguez-Cuevas, P., Muñoz-Rojas, J., and Ramos, J.L. (2007b) The RpoT regulon of Pseudomonas putida DOTT1E and its role in stress endurance against solvents. J Bacteriol 189: 207-219.
7. Englesberg, E. (1952) The mutagenic action of formaldehyde on bacteria. J Bacteriol 63: 1-11.
8. Espinosa-Urgel, M., and Ramos, J.L. (2004) Cell density-dependent gene contributes to efficient seed colonization by Pseudomonas putida KT2440. Appl Environ Microbiol 70: 5190-5198.
9. Ferguson, G.P., Jansen, A., Marlow, V.L., and Walker, G.C. (2006) BacA-mediated bleomycin sensitivity in Sinorhizobium meliloti is independent of the unusual lipid A modification. J Bacteriol 188: 3143-3148.
10. Fournier, D., Halasz, A., Spain, J., Spanggord, R.J., Bottaro, J.C., and Hawari, J. (2004) Biodegradation of the hexahydro-1,3,5-trinitro-1,3,5-triazine ring cleavage product 4-nitro-2,4-diazabutanal by Phanerochaete chrysosporium. Appl Environ Microbiol 70: 1123-1128.
11. Goldberg, I., and Matelis, R.I. (1975) Growth of Pseudomonas C on C1 compounds: enzyme activities in extracts of Pseudomonas C cells grown on methanol, formaldehyde and formate as sole carbon sources. J Bacteriol 122: 47-53.
12. Gvakharia, B.O., Permina, E.A., Gelfand, M.S., Bottomley, P.J., Sayavedra-Soto, L.A., and Arp, D.J. (2007) Global transcriptional response of Nitrosomonas europea to chloroform and chloromethane. Appl Environ Microbiol 73: 3440-3445.
13. Henderson, B., Allan, E., and Coates, A.R. (2006) Stress wars: the direct role of host and bacterial molecular chaperones in bacterial infection. Infect Immun 74: 3693-3706.
14. Jakobsen, Ø.M., Benichou, A., Flickinger, M.C., Valla, S., Ellingsen, T.E., and Brautaset, T. (2006) Upregulated transcription of plasmid and chromosomal ribulose monophosphate pathway genes is critical for methanol assimilation rate and methanol tolerance in the methylotrophic bacterium Bacillus methanolicus. J Bacteriol 188: 3063-3072.
15. Jiménez, J.I., Miñambres, B., García, J.L., and Díaz, E. (2004) Genomic insights in the metabolism of aromatic compounds in Pseudomonas. In Pseudomonas: Biosynthesis of Macromolecules and Molecular Metabolism, Vol. 3. In Ramos, J.L. (ed.). Dorchester, The Netherlands: Kluwer Academic/Plenum Publishers, pp. 425-462.
16. Kerner, M.J., Naylor, D.J., Ishihama, Y., Maier, T., Chang, H.C., Stines, A.P., et al. (2005) Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell 122: 209-220.
17. Kummerle, N., Fencht, H.H., and Kaulfers, P.M. (1996) Plasmid-mediated formaldehyde resistance in Escherichia coli: characterization of resistance genes. Antimicrob Agents Chemother 40: 2276-2279.
18. Liu, Y., Li, C.M., Lu, Z., Ding, S., Yang, X., and Mo, J. (2006) Studies of formation and repair of formaldehyde-damaged DNA by detection of DNA-protein crosslinks and DNA breaks. Front Biosci 11: 991-997.
19. Long, M.T., Bartholomew, B.A., Smith, M.J., Trudgill, P.W., and Hopper, D.J. (1997) Enzymology of oxidation of tropic acid to phenylacetic acid in metabolism of atropine by Pseudomonas sp. strain AT3. J Bacteriol 179: 1044-1050.
20. Maeda, T., Bao, B., Sanchez-Torres, Y., and Wood, T.K. (2008) Metabolic engineering to enhance bacterial hydrogen production. Microb Biotechnol 1: in press. doi:10.1111/j.1751-7915.2007.000003.x.
21. Manchee, R.J., Broster, M.G., Stagg, A.J., and Hibbs, S.E. (1994) Formaldehyde solution effectively inactivates spores of Bacillus anthraci on the Scottish island of Gruinard. Appl Environ Microbiol 60: 4167-4171.
22. Marqués, S., Ramos, J.L., and Timmis, K.N. (1993) Analysis of the mRNA structure of the Pseudomonas putida TOL meta-fission pathway operon. Biochim Biophys Acta 1216: 227-236.
23. Marx, C.J., Chistoserdova, L., and Lidstrom, M.E. (2003) Formaldehyde-detoxifying role of the tetrahydromethanopterin-linked pathway in Methylobacterium extorquens AM1. J Bacteriol 185: 7160-7168.
24. Marx, C.J., Miller, J.A., Chistoserdova, L., and Lidstrom, M.E. (2004) Multiple formaldehyde oxidation/detoxification pathways in Burkholderia fungorum LB400. J Bacteriol 186: 2173-2178.
25. Mitsui, R., Sakai, Y., Yasueda, H., and Kato, N. (2000) A novel operon encoding formaldehyde fixation: the ribulose monophosphate pathway in the gram-positive facultative methylotrophic bacterium Mycobacterium gastri MB19. J Bacteriol 182: 944-948.
26. Molina, L., Ramos, C., Duque, E., Ronchel, M.C., García, J.M., Wyke, L., and Ramos, J.L. (2000) Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions. Soil Biol Biochem 32: 315-321.
27. Mortersz, J., Sharf, C., Hecker, M., and Homuth, G. (2004) Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology 150: 497-512.
28. Musher, D.M., and Griffith, D.P. (1974) Generation of formaldehyde from methenamine: effect of pH and concentration, and antibacterial effect. Antimicrob Agents Chemother 6: 708-711.
29. Myers, W.F., and Paretsky, D. (1961) Synthesis of serine by Coxiella burnetii. J Bacteriol 82: 761-763.
30. Nachin, L., Nannmark, U., and Nyström, T. (2005) Differential roles of the universal stress proteins of Escherichia coli in oxidative stress resistance, adhesion and motility. J Bacteriol 187: 6265-6272.
31. Nakazawa, T. (2002) Travels of a Pseudomonas, from Japan around the world. Environ Microbiol 4: 782-786.
32. Neely, W.B. (1963) Action of formaldehyde on microorganisms III: bactericidal action of sublethal concentrations of formaldehyde on Aerobacter aerogenes. J Bacteriol 86: 445-448.
33. Nelson, K.E., Weinel, C., Paulsen, I.T., Dodson, R.J., Hilbert, H., Martins dos Santos, V.A., et al. (2002) Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol 4: 799-808.
34. Nester, E.W., and Spizien, J. (1961) Role of one-carbon precursors in the biosynthesis of deoxyribonucleic acid in bacteriophage-injected and growing cells of Escherichia coli. J Bacteriol 82: 867-874.
35. Orita, I., Sato, T., Yurimoto, H., Kato, N., Atomi, H., Imanaka, T., and Sakai, Y. (2006) The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis. J Bacteriol 188: 4698-4704.
36. Palma, M., Deluca, D., Worgall, S., and Quadri, L.E. (2004) Transcriptome and proteome analysis of the response of Pseudomonas aeruginosa to hydrogen peroxide. J Bacteriol 186: 248-252.
37. Poole, K. (2004) Efflux pumps. In Pseudomonas: Genomics, Life Style and Molecular Architecture, Vol. 1. Ramos, J.L. (ed.). Dorchester, The Netherlands: Kluwer Academic/Plenum Publishers, pp. 635-674.
38. Ramos, J.L., Gallegos, M.T., Marqués, S., Ramos-González, M.I., Espinosa-Urgel, M., and Segura, A. (2001) Responses of gram-negative bacteria to certain environmental stressors. Curr Opin Microbiol 4: 166-171.
39. Ramos, J.L., Duque, E., Gallegos, M.T., Godoy, P., Ramos-González, M.I., Rojas, A., et al. (2002) Mechanisms of solvent tolerance in gram-negative bacteria. Ann Rev Microbiol 56: 743-768.
40. Ramos-González, M.I., Duque, E., and Ramos, J.L. (1991) Conjugational transfer of recombinant DNA in cultures and in soils host range of Pseudomonas putida TOL plasmids. Appl Environ Microbiol 57: 3020-3027.
41. Sagripanti, J.L., and Bonifacino, A. (1996) Comparative sporicidal effect of liquid chemical agents. Appl Environ Microbiol 62: 545-551.
42. Saito, Y., Nishio, K., Yoshida, Y., and Niki, E. (2005) Cytotoxic effect of formaldehyde with free radicals via increment of cellular reactive oxygen species. Toxicology 210: 235-245.
43. Segura, A., Godoy, P., van Dillewijn, P., Hurtado, A., Arroyo, N., Santacruz, S., and Ramos, J.L. (2005) Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene. J Bacteriol 187: 5937-5945.
44. Shinabarger, D.L., and Braymer, H.D. (1986) Glyphosate catabolism by Pseudomonas sp. strain PG2982. J Bacteriol 168: 702-707.
45. Sobsey, M.D., Wallis, C., and Melnick, J.L. (1974) Chemical disinfection of holding-tank sewage. Appl Environ Microbiol 128: 861-866.
46. Takatsuka, Y., and Nikaido, H. (2006) Threonine-978 in the transmembrane segment of the multidrug efflux pump ArcB of Escherichia coli is crucial for drug transport as a probable component of the proton relay network. J Bacteriol 188: 7284-7289.
47. Taylor, L.A., Barbeito, M.S., and Gremillon, G.C. (1969) Paraformaldehyde for surface sterilization and detoxification. Appl Environ Microbiol 17: 614-618.
48. Trujillo, R., and Lindell, K. (1973) New formaldehyde base disinfectants. Appl. Environ Microbiol 26: 106-110.
49. Vorholt, J.A., Marx, C.J., Lidstrom, M.E., and Thauer, R.K. (2002) Novel formaldehyde-activating enzyme in Methylobacterium extorquens AM1 required for growth on methanol. J Bacteriol 182: 6645-6650.
50. Yang, Y.H., Dudot, S., Lun, P., Lin, D.M., Peng, V., Ngai, J., and Speed, T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30: e15.
51. Yu, E.W., Aires, J.R., McDermott, G., and Nikaido, H. (2005) A periplasmic drug-binding site of the AcrB multidrug efflux pump: a crystallographic and site-directed mutagenesis study. J Bacteriol 187: 6804-6815.
52. Yuste, L., Hervás, A.B., Canosa, I., Tobes, R., Jiménez, J.I., Nogales, J., et al. (2006) Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol 8: 165-177.