-
1
-
-
0035344638
-
Immunology in the post-genomic era
-
Aderem,A and Hood,L. (2001) Immunology in the post-genomic era. Nat. Immuno̧l., 2, 373-375.
-
(2001)
Nat. Immuno̧l
, vol.2
, pp. 373-375
-
-
Aderem, A.1
Hood, L.2
-
2
-
-
25444482801
-
Speeding disease gene discovery by sequence based candidate prioritization
-
Adie,A.E. et al. (2005) Speeding disease gene discovery by sequence based candidate prioritization. BMC Bioinformatics, 6 55.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 55
-
-
Adie, A.E.1
-
3
-
-
33645976470
-
A rough knowledge base system
-
Edited by Science LNC, Springer, Berlin, Heidelberg, pp
-
Andersson,R. et al. (2005) A rough knowledge base system. In Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing, Vol. 3642 (Edited by Science LNC). Springer, Berlin, Heidelberg, pp. 48-58.
-
(2005)
Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing
, vol.3642
, pp. 48-58
-
-
Andersson, R.1
-
4
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner,M. et al. (2000) Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
5
-
-
41749102443
-
Optimal bin number for equal frequency discretizations in supervised learning
-
Boulle,M. (2005) Optimal bin number for equal frequency discretizations in supervised learning. Int. Data Anal., 9, 175-188.
-
(2005)
Int. Data Anal
, vol.9
, pp. 175-188
-
-
Boulle, M.1
-
6
-
-
38549173606
-
The BioGRID interaction database: 2008 update
-
Breitkreutz,B. et al. (2008) The BioGRID interaction database: 2008 update. Nucleic Acids Res., 36, 637-640.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 637-640
-
-
Breitkreutz, B.1
-
7
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown,M.P. et al. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Genetics, 97, 262-267.
-
(2000)
Genetics
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
-
8
-
-
2442642905
-
Identification of genes encoding putative nucleoporins and transport factors in the fission yeast Schizosacchammyces pombe: A deletion analysis
-
Chen,X. et al. (2004) Identification of genes encoding putative nucleoporins and transport factors in the fission yeast Schizosacchammyces pombe: A deletion analysis. Yeast, 21, 495-509.
-
(2004)
Yeast
, vol.21
, pp. 495-509
-
-
Chen, X.1
-
9
-
-
36949038721
-
An efficient strategy for extensixe integration of diverse biological data for protein function prediction
-
Chua,H.N. et al. (2007) An efficient strategy for extensixe integration of diverse biological data for protein function prediction. Bioinformatics, 23, 3364-3373.
-
(2007)
Bioinformatics
, vol.23
, pp. 3364-3373
-
-
Chua, H.N.1
-
10
-
-
33749249600
-
The relationship between precision-recall and ROC curves
-
ACM, New York, NY, USA, Pittsburgh, Pennsylvania, pp
-
Davis,J. and Goadrich,M. (2006) The relationship between precision-recall and ROC curves. In ICML: Proceedings of the 23rd international conference on Machine learning. ACM, New York, NY, USA, Pittsburgh, Pennsylvania, pp. 233-240.
-
(2006)
ICML: Proceedings of the 23rd international conference on Machine learning
, pp. 233-240
-
-
Davis, J.1
Goadrich, M.2
-
11
-
-
21044444707
-
Markers of adenocarcinoma characteristic of die site of origin: Development of a diagnostic algorithm
-
Dennis,J. et al. (2005) Markers of adenocarcinoma characteristic of die site of origin: Development of a diagnostic algorithm. Clin. Cancer Res., 11, 3766-3772.
-
(2005)
Clin. Cancer Res
, vol.11
, pp. 3766-3772
-
-
Dennis, J.1
-
12
-
-
0021432656
-
Selecting an extreme-value distribution and the transforming to a specified distribution
-
Hernandez,F. and Johnson,R.A. (1984) Selecting an extreme-value distribution and the transforming to a specified distribution. Oper. Res., 32, 715-725.
-
(1984)
Oper. Res
, vol.32
, pp. 715-725
-
-
Hernandez, F.1
Johnson, R.A.2
-
13
-
-
0035044077
-
Assessment of prediction accuracy of protein function from protein-protein interaction data
-
Hishigaki,H. et al. (2001) Assessment of prediction accuracy of protein function from protein-protein interaction data. Yeast, 18, 523-531.
-
(2001)
Yeast
, vol.18
, pp. 523-531
-
-
Hishigaki, H.1
-
14
-
-
20044372938
-
Identification and characterization of protein subcomplexes in yeast
-
Hollunder,J. et al. (2005) Identification and characterization of protein subcomplexes in yeast. Proteomics, 5, 2082-2089.
-
(2005)
Proteomics
, vol.5
, pp. 2082-2089
-
-
Hollunder, J.1
-
15
-
-
0031760687
-
Neural network-based prediction of candidate T-cell epitopes
-
Honeyman,M.C. et al. (1998) Neural network-based prediction of candidate T-cell epitopes. Nat. Biotechnol., 16, 966-969.
-
(1998)
Nat. Biotechnol
, vol.16
, pp. 966-969
-
-
Honeyman, M.C.1
-
16
-
-
0035229817
-
Predicting gene function from gene expressions and ontologies
-
Hvidsten,T. et al. (2001) Predicting gene function from gene expressions and ontologies. Pac. Symp. Biocomput., 299-310.
-
(2001)
Pac. Symp. Biocomput
, pp. 299-310
-
-
Hvidsten, T.1
-
17
-
-
0038729567
-
Learning rule-based models of biological process from gene expression time profiles using gene ontology
-
Hvidsten,T. et al. (2003) Learning rule-based models of biological process from gene expression time profiles using gene ontology. Bioinformatics, 19, 1116-1123.
-
(2003)
Bioinformatics
, vol.19
, pp. 1116-1123
-
-
Hvidsten, T.1
-
18
-
-
22344449795
-
Discovering regulatory binding site modules using rule-based learning
-
Hvidsten,T. et al. (2005) Discovering regulatory binding site modules using rule-based learning. Genome Res., 15, 856-866.
-
(2005)
Genome Res
, vol.15
, pp. 856-866
-
-
Hvidsten, T.1
-
19
-
-
0032990408
-
A complete BAC-based physical map of the Arabidopsis thaliana genome
-
Jensen,L. et al. (1999) A complete BAC-based physical map of the Arabidopsis thaliana genome. Nat Genet., 22, 271-275.
-
(1999)
Nat Genet
, vol.22
, pp. 271-275
-
-
Jensen, L.1
-
20
-
-
18444390875
-
Prediction of human protein function from post-translational modifications and localization features
-
Jensen,L. et al. (2002) Prediction of human protein function from post-translational modifications and localization features. J. Mol. Biol., 316, 1257-1265.
-
(2002)
J. Mol. Biol
, vol.316
, pp. 1257-1265
-
-
Jensen, L.1
-
21
-
-
0242490786
-
Functionality of system components: Conservation of protein function in protein feature space
-
Jensen,L. et al. (2003) Functionality of system components: conservation of protein function in protein feature space. Genome Res., 13, 2444-2449.
-
(2003)
Genome Res
, vol.13
, pp. 2444-2449
-
-
Jensen, L.1
-
23
-
-
0003144494
-
Rough Sets - tutorial
-
Pal,S.K. and Skowron,A eds, Springer, Singapore, pp
-
Komorowski,J. (1999) Rough Sets - tutorial. In Pal,S.K. and Skowron,A (eds), Rough-fuzzy Hybridization - A New Trend in Decision Making. Springer, Singapore, pp. 3-98.
-
(1999)
Rough-fuzzy Hybridization - A New Trend in Decision Making
, pp. 3-98
-
-
Komorowski, J.1
-
24
-
-
59549086394
-
-
Komorowski,H.J. (2092) Modelling biological phenomena with rough sets. In Alpigini,J.J. et al.., (eds), Proceedings of the Third International Conference on Rough Sets and Current Trends in Computing, Lecture Notes In Computer Science, Malvern, PA, USA, October 14-16. 2475, Springer, Berlin, Heidelberg, p. 949.
-
Komorowski,H.J. (2092) Modelling biological phenomena with rough sets. In Alpigini,J.J. et al.., (eds), Proceedings of the Third International Conference on Rough Sets and Current Trends in Computing, Lecture Notes In Computer Science, Malvern, PA, USA, October 14-16. Vol. 2475, Springer, Berlin, Heidelberg, p. 949.
-
-
-
-
25
-
-
34250675995
-
TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis
-
Koyama,T. et al. (2007) TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. Plant Cell, 19, 473-484.
-
(2007)
Plant Cell
, vol.19
, pp. 473-484
-
-
Koyama, T.1
-
26
-
-
0038781869
-
Predicting Gene Ontology biological process from temporal gene expression patterns
-
Lægreid,A. et al. (2003) Predicting Gene Ontology biological process from temporal gene expression patterns. Genome Res., 13 965-979.
-
(2003)
Genome Res
, vol.13
, pp. 965-979
-
-
Lægreid, A.1
-
27
-
-
0038412810
-
Protein feature based identification of cell cycle regulated proteins in yeast
-
Lichtenberg,U. et al. (2003) Protein feature based identification of cell cycle regulated proteins in yeast. J. Mol. Biol., 329 149-170.
-
(2003)
J. Mol. Biol
, vol.329
, pp. 149-170
-
-
Lichtenberg, U.1
-
28
-
-
24044440971
-
A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere,S. et al. (2005) A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 21, 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
-
29
-
-
0037338297
-
Data analysis: The Achilles heel of proteomics
-
Patterson,S. (2003) Data analysis: The Achilles heel of proteomics. Nat. Biotechnol., 21, 221-222.
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 221-222
-
-
Patterson, S.1
-
30
-
-
0010518383
-
Rough Sets: Theoretical aspects of reasoning about data
-
1st edn, Kluwer Academic Publishers, Norwell, MA, USA, pp
-
Pawlak,Z. (1992) Rough Sets: Theoretical aspects of reasoning about data. In Theory Decision Lib. Vol. 9, 1st edn, Kluwer Academic Publishers, Norwell, MA, USA, pp. 1-229.
-
(1992)
Theory Decision Lib
, vol.9
, pp. 1-229
-
-
Pawlak, Z.1
-
31
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush,J. (2001) Computational analysis of microarray data. Nat. Rev. Genet., 2, 418-428.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 418-428
-
-
Quackenbush, J.1
-
32
-
-
33748313061
-
Ppc89 links multiple proteins, including the septation initiation network, to the core of the fission yeast spindle-pole body
-
Rosenberg,J. et al. (2006) Ppc89 links multiple proteins, including the septation initiation network, to the core of the fission yeast spindle-pole body. Mol. Biol. Cell, 17, 3793-3805.
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 3793-3805
-
-
Rosenberg, J.1
-
33
-
-
3543042493
-
Periodic gene expression program of the fission yeast cell cycle
-
Rustici,G. et al. (2004) Periodic gene expression program of the fission yeast cell cycle. Nat. Genet., 36, 809-817.
-
(2004)
Nat. Genet
, vol.36
, pp. 809-817
-
-
Rustici, G.1
-
34
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena,M. et al. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
-
35
-
-
45149101194
-
Current approaches to gene regulatory network modelling
-
Schlitt,T. and Brazma,A. (2007) Current approaches to gene regulatory network modelling. BMC Bioinformatics, 8, s9.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Schlitt, T.1
Brazma, A.2
-
36
-
-
0035284320
-
Analysis of incomplete climate data: Estimation of mean values and covariance matrices and imputation of missing values
-
Schneider,T. (2001) Analysis of incomplete climate data: Estimation of mean values and covariance matrices and imputation of missing values. J. Clim., 14, 853-871.
-
(2001)
J. Clim
, vol.14
, pp. 853-871
-
-
Schneider, T.1
-
37
-
-
0030242350
-
A parallel algorithm for real-time decision making: A Rough Set approach
-
Skowron,A. and Suraj,Z. (1996) A parallel algorithm for real-time decision making: A Rough Set approach. J. Int. Inform. Syst., 7 15-28.
-
(1996)
J. Int. Inform. Syst
, vol.7
, pp. 15-28
-
-
Skowron, A.1
Suraj, Z.2
-
38
-
-
0036948440
-
Application of rule induction and Rough Sets to verification of magnetic resonance diagnosis
-
Slowiñski,K. et al. (2002) Application of rule induction and Rough Sets to verification of magnetic resonance diagnosis. Fundam. Inf., 53, 345-363.
-
(2002)
Fundam. Inf
, vol.53
, pp. 345-363
-
-
Slowiñski, K.1
-
39
-
-
10044262966
-
An empirical comparison of supervised machine learning techniques in bioinformatics
-
Adelaide, Australia, Australian Computer Science Inc, Darlinghurst, Australia, pp
-
Tan,A.C. and Gilbert,D. (2003) An empirical comparison of supervised machine learning techniques in bioinformatics. In Proceedings of the First Asia Pacific Bioinformatics conference, Vol. 19, Adelaide, Australia, Australian Computer Science Inc., Darlinghurst, Australia, pp. 219-222.
-
(2003)
Proceedings of the First Asia Pacific Bioinformatics conference
, vol.19
, pp. 219-222
-
-
Tan, A.C.1
Gilbert, D.2
-
40
-
-
33344469496
-
A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles
-
Tikunov,Y. et al. (2005) A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiol., 139, 1125-1137.
-
(2005)
Plant Physiol
, vol.139
, pp. 1125-1137
-
-
Tikunov, Y.1
-
41
-
-
34547137389
-
A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana
-
Van Leene,J. et al. (2007) A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana. Mol. Cell Proteomics, 6, 1226-1238.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 1226-1238
-
-
Van Leene, J.1
-
42
-
-
33645967150
-
AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1
-
Vaucheret,H. et al. (2006) AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol. Cell, 22, 129-136.
-
(2006)
Mol. Cell
, vol.22
, pp. 129-136
-
-
Vaucheret, H.1
-
43
-
-
0001206731
-
Minimal approximate hitting sets and rule templates
-
Vinterbo,S. and Øhrn,A. (2000) Minimal approximate hitting sets and rule templates. Int. J. Approx. Reason, 25, 123-143.
-
(2000)
Int. J. Approx. Reason
, vol.25
, pp. 123-143
-
-
Vinterbo, S.1
Øhrn, A.2
-
44
-
-
0033452362
-
Prediction of gene function by genome-scale expression analysis: Prostate cancer-associated genes
-
Walker,M. et al. (1999) Prediction of gene function by genome-scale expression analysis: Prostate cancer-associated genes. Genome Res., 9, 1198-1203.
-
(1999)
Genome Res
, vol.9
, pp. 1198-1203
-
-
Walker, M.1
-
45
-
-
0036649020
-
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
-
Wu,L. et al. (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat. Genet., 31, 255-265.
-
(2002)
Nat. Genet
, vol.31
, pp. 255-265
-
-
Wu, L.1
-
46
-
-
0037667290
-
Clustering gene expression data with repeated measurements
-
Yeung,K. et al. (2003) Clustering gene expression data with repeated measurements. Genome Biol., 4, s34.
-
(2003)
Genome Biol
, vol.4
-
-
Yeung, K.1
|