Translational efficiency of redundant ACG initiator codons is enhanced by a favorable sequence context and remedial initiation

Journal of Biological Chemistry

Volumn 284, Issue 2, 2009, Pages 818-827

  Chen, Shun Jia ^a   Ko, Chou Yuan ^b   Yen, Chih Wei ^c   Wang, Chien Chia ^a  

^a NATIONAL CENTRAL UNIVERSITY   (Taiwan)

^b TAOYUAN ARMED FORCES GENERAL HOSPITAL   (Taiwan)

^c CATHAY GENERAL HOSPITAL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCES; NUCLEIC ACIDS; NUCLEOTIDES; QUALITY ASSURANCE; RELIABILITY; TRANSLATION (LANGUAGES);

INITIATION SITES; TRANSLATION INITIATION SITES; TRANSLATIONAL EFFICIENCIES; TRANSLATIONAL INITIATIONS;

REDUNDANCY;

NUCLEOTIDE;

ARTICLE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RIBOSOME; RNA TRANSLATION; START CODON; TRANSLATION INITIATION; TRANSLATION REGULATION;

CODON, INITIATOR; MITOCHONDRIA; NUCLEOTIDES; PROTEIN BIOSYNTHESIS; RECOMBINANT PROTEINS;

EID: 59449103135     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M804378200     Document Type: Article

References (44)

1. Carter, C. W., Jr. (1993) Annu. Rev. Biochem. 62, 715-748
2. Martinis, S. A., and Schimmel, P. (1996) in Escherichia coli and Salmonella Cellular and Molecular Biology (Neidhardt, F. C., ed) pp. 887-901, 2nd Ed., American Society of Microbiology, Washington, D. C.
3. Giegé, R., Sissler, M., and Florentz, C. (1998) Nucleic Acids Res. 26, 5017-5035
4. Pelchat, M., and Lapointe, J. (1999) Biochem. Cell Biol. 77, 343-347
5. Dietrich, A., Weil, J. H., and Marechal-Drouard, L. (1992) Annu. Rev. Cell Biol. 8, 115-131
6. Natsoulis, G., Hilger, F., and Fink, G. R. (1986) Cell 46, 235-243
7. Chatton, B., Walter, P., Ebel, J.-P., Lacroute, F., and Fasiolo, F. (1988) J.Biol. Chem. 263, 52-57
8. Wang, C. C., Chang, K. J., Tang, H. L., Hsieh, C. J., and Schimmel, P. (2003) Biochemistry 42, 1646-1651
9. Souciet, G., Menand, B., Ovesna, J., Cosset, A., Dietrich, A., and Wintz, H. (1999) Eur. J. Biochem. 266, 848-854
10. Huang, H. Y., Kuei, Y., Chao, H. Y., Chen, S. J., Yeh, L. S., and Wang, C. C. (2006) J.Biol. Chem. 281, 31430-31439
11. Chang, K. J., and Wang, C. C. (2004) J.Biol. Chem. 279, 13778-13785
12. Tang, H. L., Yeh, L. S., Chen, N. K., Ripmaster, T., Schimmel, P., and Wang, C. C. (2004) J. Biol. Chem. 279, 49656-49663
13. Unbehaun, A., Borukhov, S. I., Hellen, C. U., and Pestova, T. V. (2004) Genes Dev. 18, 3078-3093
14. Cheung, Y. N., Maag, D., Mitchell, S. F., Fekete, C. A., Algire, M. A., Takacs, J. E., Shirokikh, N., Pestova, T., Lorsch, J. R., and Hinnebusch, A. G. (2007) Genes Dev. 21, 1217-1230
15. Sherman, F., Stewart, J. W., and Schweingruber, A. M. (1980) Cell 20, 215-222
16. Kozak, M. (1989) Mol. Cell. Biol. 9, 5073-5080
17. Kozak, M. (1991) J. Biol. Chem. 266, 19867-19870
18. Pisarev, A. V., Kolupaeva, V. G., Pisareva, V. P., Merrick, W. C., Hellen, C. U. T., and Pestova, T. V. (2006) Genes Dev. 20, 624-636
19. Kozak, M. (1990) Proc. Natl. Acad. Sci. U.S.A 87, 8301-8305
20. Cigan, A. M., and Donahue, T. F. (1987) Gene (Amst.) 59, 1-18
21. Baim, S. B., and Sherman, F. (1988) Mol. Cell. Biol. 8, 1591-1601
22. Cigan, A. M., Pabich, E. K., and Donahue, T. F. (1988) Mol. Cell. Biol. 8, 2964-2975
23. Zitomer, R. S., Walthall, D. A., Rymond, B. C., and Hollenberg, C. P. (1984) Mol. Cell. Biol. 4, 1191-1197
24. Clements, J. M., Laz, T. M., and Sherman, F. (1988) Mol. Cell. Biol. 8, 4533-4536
25. Abramczyk, D., Tchorzewski, M., and Grankowski, N. (2003) Yeast 20, 1045-1052
26. Chen, S. J., Lin, G., Chang, K. J., Yeh, L. S., and Wang, C. C. (2008) J. Biol. Chem. 283, 3173-3180
27. Turner, R. J., Lovato, M., and Schimmel, P. (2000) J. Biol. Chem. 275, 27681-27688
28. Huang, H. Y., Tang, H. L., Chao, H. Y., Yeh, L. S., and Wang, C. C. (2006) Mol. Microbiol. 60, 189-198
29. Chang, K. J., Lin, G., Men, L. C., and Wang, C. C. (2006) J.Biol. Chem. 281, 7775-7783
30. Bennetzen, J. L., and Hall, B. D. (1982) J.Biol. Chem. 257, 3018-3025
31. Polevoda, B., Norbeck, J., Takakura, H., Blomberg, A., and Sherman, F. (1999) EMBO J. 21, 6155-6168
32. Slusher, L. B., Gillman, E. C., Martin, N. C., and Hopper, A. K. (1991) Proc. Natl. Acad. Sci. U. S. A 88, 9789-9793
33. Wolfe, C. L., Lou, Y. C., Hopper, A. K., and Martin, N. C. (1994) J. Biol. Chem. 269, 13361-13366
34. Acland, P., Dixon, M., Peters, G., and Dickson, C. (1990) Nature 343, 662-665
35. Saris, C.J., Domen, J., and Berns,A. (1991) EMBO J. 10, 655-664
36. Hann, S. R., Sloan-Brown, K., and Spotts, G. D. (1992) Genes Dev. 6, 1229-1240
37. Packham, G., Brimmell, M., and Cleveland, J. L. (1997) Biochem. J. 328, 807-813
38. Kozak, M. (1999) Gene (Amst.) 234, 187-208
39. Riechmann, I. L., Ito, T., and Meyerowitz, E. M. (1999) Mol. Cell. Biol. 19, 8505-8512
40. Sadler, R., Wu, L., Forghani, B., Renne, R., Zhong, W., Herndier, B., and Ganem, D. (1999) J. Viol. 73, 5722-5730
41. Yoon, H., and Donahue, T. F. (1992) Mol. Microbiol. 6, 1413-1419
42. Huang, S., Elliott, R. C., Liu, P. S., Koduri, R. K., Weickmann, J.L., Lee, J. H., Blair, L. C., Ghosh-Dastidar, P., Bradshaw, R. A., Bryan, K. M., Einarson, B., Kendall, R. L., Kolacz, K. H., and Saito, K. (1987) Biochemistry 26, 8242-8246
43. Chen, S., Vetro, J. A., and Chang, Y. H. (2002) Arch. Biochem. Biophys. 398, 87-93
44. Varshavsky, A. (1996) Proc. Natl. Acad. Sci. U. S. A 93, 12142-12149