The protein interaction network of the epithelial junctional complex: A system-level analysis

Molecular Biology of the Cell

Volumn 19, Issue 12, 2008, Pages 5409-5421

  Paris, Luca ^a   Bazzoni, Gianfranco ^a  

^a MARIO NEGRI INSTITUTE FOR PHARMACOLOGICAL RESEARCH   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL JUNCTION; COMPLEX FORMATION; DESMOSOME; EPITHELIUM; EPITHELIUM CELL; ESSENTIAL GENE; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION; TIGHT JUNCTION;

ANIMALS; CELL ADHESION; EPITHELIAL CELLS; GENE REGULATORY NETWORKS; HUMANS; MICE; MODELS, BIOLOGICAL; PROTEIN INTERACTION MAPPING; TIGHT JUNCTIONS;

EID: 59449101794     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.E08-05-0477     Document Type: Article

References (33)

1. Albert, R., Jeong, H., and Barabasi, A. L. (2000). Error and attack tolerance of complex networks. Nature 406, 378-382.
2. Barabasi, A. L., and Albert, R. (1999). Emergence of scaling in random networks. Science 286, 509-512.
3. Barabasi, A. L., and Oltvai, Z. N. (2004). Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5, 101-113.
4. Bazzoni, G., and Dejana, E. (2004). Endothelial cell-to-cell junctions: molecular organization and role in vascular homeostasis. Physiol. Rev. 84, 869-901.
5. Cox, E. A., and Hardin, J. (2004). Sticky worms: adhesion complexes in C. elegans. J. Cell Sci. 117, 1885-1897.
6. de Hoon, M. J., Imoto, S., Nolan, J., and Miyano, S. (2004). Open source clustering software. Bioinformatics 20, 1453-1454.
7. Eisen, M. B., Spellman, P. T., Brown, P. O., and Botstein, D. (1998). Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA. 95, 14863-14868.
8. Garrod, D., and Chidgey, M. (2008). Desmosome structure, composition and function. Biochim. Biophys. Acta 1778, 572-587.
9. Girvan, M., and Newman, M. E. (2002). Community structure in social and biological networks. Proc. Natl. Acad. Sci. USA. 99, 7821-7826.
10. Goh, K. I., Cusick, M. E., Valle, D., Childs, B., Vidal, M., and Barabasi, A. L. (2007). The human disease network. Proc. Natl. Acad. Sci. USA. 104, 8685-8690.
11. Green, K. J., and Simpson, C. L. (2007). Desmosomes: new perspectives on a classic. J. Invest. Dermatol. 127, 2499-2515.
12. Guimera, R., and Nunes Amaral, L. A. (2005). Functional cartography of complex metabolic networks. Nature 433, 895-900.
13. Hartsock, A., and Nelson, W. J. (2008). Adherens and tight junctions: Structure, function and connections to the actin cytoskeleton. Biochim. Biophys. Acta 1778, 660-669.
14. Hartwell, L. H., Hopfield, J. J., Leibler, S., and Murray, A. W. (1999). From molecular to modular cell biology. Nature 402, C47-C52.
15. Hynes, R. O., and Zhao, Q. (2000). The evolution of cell adhesion. J. Cell Biol. 150, F89-F96.
16. Ideker, T., and Sharan, R. (2008). Protein networks in disease. Genome Res. 18, 644-652.
17. Jeong, H., Mason, S. P., Barabasi, A. L., and Oltvai, Z. N. (2001). Lethality and centrality in protein networks. Nature 411, 41-42.
18. Matter, K., and Balda, M. S. (2007). Epithelial tight junctions, gene expression and nucleo-junctional interplay. J. Cell Sci. 120, 1505-1511.
19. Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D., and Alon, U. (2002). Network motifs: simple building blocks of complex networks. Science 298, 824-827.
20. Nelson, W. J., and Nusse, R. (2004). Convergence of Wnt, beta-catenin, and cadherin pathways. Science 303, 1483-1487.
21. Paris, L., Tonutti, L., Vannini, C., and Bazzoni, G. (2008). Structural organization of the tight junctions. Biochim. Biophys. Acta 1778, 646-659.
22. Pereira-Leal, J. B., Audit, B., Peregrin-Alvarez, J. M., and Ouzounis, C. A. (2005). An exponential core in the heart of the yeast protein interaction network. Mol. Biol. Evol. 22, 421-425.
23. Perez-Moreno, M., Jamora, C., and Fuchs, E. (2003). Sticky business: orchestrating cellular signals at adherens junctions. Cell 112, 535-548.
24. Rachlin, J., Cohen, D. D., Cantor, C., and Kasif, S. (2006). Biological context networks: a mosaic view of the interactome. Mol. Syst. Biol. 2, 66.
25. Ravasz, E., Somera, A. L., Mongru, D. A., Oltvai, Z. N., and Barabasi, A. L. (2002). Hierarchical organization of modularity in metabolic networks. Science 297, 1551-1555.
26. Rives, A. W., and Galitski, T. (2003). Modular organization of cellular networks. Proc. Natl. Acad. Sci. USA 100, 1128-1133.
27. Saldanha, A. J. (2004). Java Treeview-extensible visualization of microarray data. Bioinformatics 20, 3246-3248.
28. Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504.
29. Sharan, R., and Ideker, T. (2006). Modeling cellular machinery through biological network comparison. Nat. Biotechnol. 24, 427-433.
30. Wagner, A. (2001). The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. Mol. Biol. Evol. 18, 1283-1292.
31. Watts, D. J., and Strogatz, S. H. (1998). Collective dynamics of 'small-world' networks. Nature 393, 440-442.
32. Whittaker, C. A., Bergeron, K. F., Whittle, J., Brandhorst, B. P., Burke, R. D., and Hynes, R. O. (2006). The echinoderm adhesome. Dev. Biol. 300, 252-266.
33. Zaidel-Bar, R., Itzkovitz, S., Ma'ayan, A., Iyengar, R., and Geiger, B. (2007). Functional atlas of the integrin adhesome. Nat. Cell Biol. 9, 858-867.