메뉴 건너뛰기




Volumn 135, Issue 2, 2009, Pages 123-135

Molecular evolution of paclitaxel biosynthetic genes TS and DBAT of Taxus species

Author keywords

10 Deacetylbaccatin III 10 O acetyltransferase; Adaptive evolution; Paclitaxel; Positive selection; Taxadiene synthase; Taxus

Indexed keywords

ACYLTRANSFERASE; ISOMERASE; PACLITAXEL; TAXA 4(5),11(12) DIENE SYNTHASE; TAXA-4(5),11(12)-DIENE SYNTHASE;

EID: 59449095198     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10709-008-9257-7     Document Type: Article
Times cited : (19)

References (36)
  • 1
    • 0042208362 scopus 로고    scopus 로고
    • Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    • M Anisimova R Nielsen Z Yang 2003 Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites Genetics 164 1229 1236
    • (2003) Genetics , vol.164 , pp. 1229-1236
    • Anisimova, M.1    Nielsen, R.2    Yang, Z.3
  • 2
    • 20444396509 scopus 로고    scopus 로고
    • Directed mutagenesis confirms the functional importance of positively selected sites in polygalacturonase inhibitor protein
    • JG Bishop 2005 Directed mutagenesis confirms the functional importance of positively selected sites in polygalacturonase inhibitor protein Mol Biol Evol 22 1531 1534
    • (2005) Mol Biol Evol , vol.22 , pp. 1531-1534
    • Bishop, J.G.1
  • 3
    • 0034115566 scopus 로고    scopus 로고
    • Phylogeny of taxaceae and cephalotaxaceae genera inferred from chloroplast matK gene and nuclear rDNA ITS region
    • Y Cheng RG Nicolson K Tripp SM Chaw 2000 Phylogeny of taxaceae and cephalotaxaceae genera inferred from chloroplast matK gene and nuclear rDNA ITS region Mol Phylogenet Evol 14 353 365
    • (2000) Mol Phylogenet Evol , vol.14 , pp. 353-365
    • Cheng, Y.1    Nicolson, R.G.2    Tripp, K.3    Chaw, S.M.4
  • 4
    • 33846818777 scopus 로고    scopus 로고
    • Combined empirical and mechanistic codon model
    • A Doron-Faigenboim TA Pupko 2007 Combined empirical and mechanistic codon model Mol Biol Evol 24 388 397
    • (2007) Mol Biol Evol , vol.24 , pp. 388-397
    • Doron-Faigenboim, A.1    Pupko, T.A.2
  • 5
    • 0016197604 scopus 로고
    • Amino-acid difference formula to help explain protein evolution
    • R Grantham 1974 Amino-acid difference formula to help explain protein evolution Science 185 862 864
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 7
    • 0028964563 scopus 로고
    • Cyclization of geranylgeranyl diphosphate to taxa-4(5),11(12)-diene is the committed step of Taxol biosynthesis in Pacific yew
    • E Koepp M Hezari J Zajicek 1995 Cyclization of geranylgeranyl diphosphate to taxa-4(5),11(12)-diene is the committed step of Taxol biosynthesis in Pacific yew J Biol Chem 270 8686 8690
    • (1995) J Biol Chem , vol.270 , pp. 8686-8690
    • Koepp, E.1    Hezari, M.2    Zajicek, J.3
  • 8
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after All: A comparison of methods for detecting amino acid sites under selection
    • SL Kosakovsky Pond SD Frost 2005 Not so different after All: a comparison of methods for detecting amino acid sites under selection Mol Biol Evol 22 1208 1222
    • (2005) Mol Biol Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 9
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • SL Kosakovsky Pond SD Frost 2005 Datamonkey: rapid detection of selective pressure on individual sites of codon alignments Bioinformatics 21 2531 2533
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 10
    • 14544275616 scopus 로고    scopus 로고
    • A genetic algorithm approach to detecting lineage-specific variation in selection pressure
    • SL Kosakovsky Pond SD Frost 2005 A genetic algorithm approach to detecting lineage-specific variation in selection pressure Mol Biol Evol 22 478 485
    • (2005) Mol Biol Evol , vol.22 , pp. 478-485
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 12
    • 0021710490 scopus 로고
    • Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
    • WH Li CI Wu CC Luo 1984 Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications J Mol Evol 21 58 71
    • (1984) J Mol Evol , vol.21 , pp. 58-71
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 13
    • 0842263293 scopus 로고    scopus 로고
    • Phylogeny and biogeography of Taxus (Taxaceae) inferred from sequences of the internal transcribed spacer region of nuclear ribosomal DNA
    • J Li CC Davis PD Tredici 2001 Phylogeny and biogeography of Taxus (Taxaceae) inferred from sequences of the internal transcribed spacer region of nuclear ribosomal DNA Harvard Papers Bot 6 267 274
    • (2001) Harvard Papers Bot , vol.6 , pp. 267-274
    • Li, J.1    Davis, C.C.2    Tredici, P.D.3
  • 14
    • 20044368434 scopus 로고    scopus 로고
    • Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans
    • Z Liu JIB Bos M Armstrong 2005 Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans Mol Biol Evol 22 659 672
    • (2005) Mol Biol Evol , vol.22 , pp. 659-672
    • Liu, Z.1    Bos, J.I.B.2    Armstrong, M.3
  • 15
    • 0027328291 scopus 로고
    • Chloroplast DNA codon use: Evidence for selection at the psbA locus based on tRNA availability
    • BR Morton 1993 Chloroplast DNA codon use: evidence for selection at the psbA locus based on tRNA availability J Mol Evol 37 273 280
    • (1993) J Mol Evol , vol.37 , pp. 273-280
    • Morton, B.R.1
  • 16
    • 20444430245 scopus 로고    scopus 로고
    • A scan for positively selected genes in the genomes of Humans and Chimpanzees
    • R Nielsen C Bustamante AG Clark 2005 A scan for positively selected genes in the genomes of Humans and Chimpanzees PloS Biol 3 976 985
    • (2005) PloS Biol , vol.3 , pp. 976-985
    • Nielsen, R.1    Bustamante, C.2    Clark, A.G.3
  • 17
    • 33747828694 scopus 로고    scopus 로고
    • ModelTest Server: A web-based tool for the statistical selection of models of nucleotide substitution online
    • D Posada 2006 ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online Nucleic Acids Res 34 W700 703
    • (2006) Nucleic Acids Res , vol.34 , pp. 700-703
    • Posada, D.1
  • 18
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • F Ronquist JP Huelsenbeck 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 1572 1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 19
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • J Rozas JC Sánchez-DelBarrio X Messeguer 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2496 2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-Delbarrio, J.C.2    Messeguer, X.3
  • 20
    • 0026002819 scopus 로고
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution
    • PM Sharp 1991 Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution J Mol Evol 33 23 33
    • (1991) J Mol Evol , vol.33 , pp. 23-33
    • Sharp, P.M.1
  • 21
    • 35848934793 scopus 로고    scopus 로고
    • Taxonomy and nomenclature of Taxus
    • RW Spjut 2007 Taxonomy and nomenclature of Taxus J Bot Res Inst Texas 23 203 289
    • (2007) J Bot Res Inst Texas , vol.23 , pp. 203-289
    • Spjut, R.W.1
  • 22
    • 37349038628 scopus 로고    scopus 로고
    • A phytogeographical analysis of Taxus (Taxaceae) based on leaf anatomical characters
    • RW Spjut 2007 A phytogeographical analysis of Taxus (Taxaceae) based on leaf anatomical characters J Bot Res Inst Texas 23 291 332
    • (2007) J Bot Res Inst Texas , vol.23 , pp. 291-332
    • Spjut, R.W.1
  • 23
    • 0035957018 scopus 로고    scopus 로고
    • Positive darwinian selection in the evolution of mammalian female reproductive proteins
    • WJ Swanson Z Yang MF Wolfner 2001 Positive darwinian selection in the evolution of mammalian female reproductive proteins Proc Natl Acad Sci USA 98 2509 2514
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 2509-2514
    • Swanson, W.J.1    Yang, Z.2    Wolfner, M.F.3
  • 24
    • 59449085316 scopus 로고    scopus 로고
    • Sinauer Associates Sunderland, Massachusetts
    • Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts
    • (2002)
    • Swofford, D.L.1
  • 25
    • 0034980234 scopus 로고    scopus 로고
    • Genomic organization of plant terpene synthases and molecular evolutionary implications
    • SC Trapp RB Croteau 2001 Genomic organization of plant terpene synthases and molecular evolutionary implications Genetics 158 811 832
    • (2001) Genetics , vol.158 , pp. 811-832
    • Trapp, S.C.1    Croteau, R.B.2
  • 26
    • 0034142272 scopus 로고    scopus 로고
    • Screening of the needles of different yew species and cultivars for paclitaxel and related taxoids
    • EL van Rozendaal GP Lelyveld TA van Beek 2000 Screening of the needles of different yew species and cultivars for paclitaxel and related taxoids Phytochemistry 53 383 389
    • (2000) Phytochemistry , vol.53 , pp. 383-389
    • Van Rozendaal, E.L.1    Lelyveld, G.P.2    Van Beek, T.A.3
  • 27
    • 0034681193 scopus 로고    scopus 로고
    • Molecular cloning of a 10-deacetylbaccatin III-10-O-acetyl transferase cDNA from Taxus and functional expression in Escherichia coli
    • K Walker RB Croteau 2000 Molecular cloning of a 10-deacetylbaccatin III-10-O-acetyl transferase cDNA from Taxus and functional expression in Escherichia coli Proc Natl Acad Sci USA 97 583 587
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 583-587
    • Walker, K.1    Croteau, R.B.2
  • 29
    • 0029873176 scopus 로고    scopus 로고
    • A cDNA clone for taxadiene synthase, the diterpene cyclase that catalyzes the committed step of Taxol biosynthesis
    • MR Wildung RB Croteau 1996 A cDNA clone for taxadiene synthase, the diterpene cyclase that catalyzes the committed step of Taxol biosynthesis J Biol Chem 271 9201 9204
    • (1996) J Biol Chem , vol.271 , pp. 9201-9204
    • Wildung, M.R.1    Croteau, R.B.2
  • 30
    • 0034234699 scopus 로고    scopus 로고
    • Heterologous expression and characterization of a " pseudomature" form of taxadiene synthase involved in paclitaxel (Taxol) biosynthesis and evaluation of a potential intermediate and inhibitors of the multistep diterpene cyclization reaction
    • DC Williams MR Wildung AQ Jin 2000 Heterologous expression and characterization of a "Pseudomature" form of taxadiene synthase involved in paclitaxel (Taxol) biosynthesis and evaluation of a potential intermediate and inhibitors of the multistep diterpene cyclization reaction Arch Biochem Biophys 379 137 146
    • (2000) Arch Biochem Biophys , vol.379 , pp. 137-146
    • Williams, D.C.1    Wildung, M.R.2    Jin, A.Q.3
  • 31
    • 0025318864 scopus 로고
    • The "effective number of codons" used in a gene
    • F Wright 1990 The "effective number of codons" used in a gene Gene 87 23 29
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 32
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: A program package for phylogenetic analysis by maximum likelihood
    • Z Yang 2007 PAML 4: a program package for phylogenetic analysis by maximum likelihood Mol Biol Evol 24 1586 1591
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 33
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Z Yang S Kumar M Nei 1995 A new method of inference of ancestral nucleotide and amino acid sequences Genetics 141 1641 1650
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 34
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Z Yang R Nielsen N Goldman 2000 Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 155 431 449
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3
  • 35
    • 0041571683 scopus 로고    scopus 로고
    • Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions
    • J Zhang 2003 Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions Mol Biol Evol 20 1310 1317
    • (2003) Mol Biol Evol , vol.20 , pp. 1310-1317
    • Zhang, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.