메뉴 건너뛰기




Volumn 55, Issue 1, 2009, Pages 73-79

Methanogenic archaeal communities developed in paddy fields in the Kojima Bay polder, estimated by denaturing gradient gel electrophoresis, real-time PCR and sequencing analyses

Author keywords

Methanogenic archaea; Paddy field soil; PCR DGGE; Polder; Real time PCR

Indexed keywords

ARCHAEA; METHANOBACTERIALES; METHANOMICROBIALES; METHANOSARCINA; METHANOSARCINALES;

EID: 59149102705     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1111/j.1747-0765.2008.00334.x     Document Type: Article
Times cited : (21)

References (25)
  • 2
    • 34748894287 scopus 로고    scopus 로고
    • Bacterial communities in manganese nodules in rice field subsoils: Estimation using PCR-DGGE and sequencing analyses
    • Cahyani VR, Murase J, Ishibashi E, Asakawa S, Kimura M 2007 : Bacterial communities in manganese nodules in rice field subsoils: estimation using PCR-DGGE and sequencing analyses. Soil Sci. Plant Nutr., 53, 575 584.
    • (2007) Soil Sci. Plant Nutr. , vol.53 , pp. 575-584
    • Cahyani, V.R.1    Murase, J.2    Ishibashi, E.3    Asakawa, S.4    Kimura, M.5
  • 3
    • 0141833368 scopus 로고    scopus 로고
    • Flooded soils
    • In. Vol. 3. Ed. Bitton G., pp. John Wiley & Sons, New York.
    • Conrad R, Frenzel P 2002 : Flooded soils. In Encyclopedia of Environmental Microbiology, Vol. 3. Ed. G Bitton, pp. 1316 1333. John Wiley & Sons, New York.
    • (2002) Encyclopedia of Environmental Microbiology , pp. 1316-1333
    • Conrad, R.1    Frenzel, P.2
  • 5
    • 33644841315 scopus 로고    scopus 로고
    • Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient
    • Freitag TE, Chang L, Prosser JI 2006 : Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient. Environ. Microbiol., 8, 684 696.
    • (2006) Environ. Microbiol. , vol.8 , pp. 684-696
    • Freitag, T.E.1    Chang, L.2    Prosser, J.I.3
  • 6
    • 38049023927 scopus 로고    scopus 로고
    • Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification
    • Hayatsu M, Tago K, Saito M 2008 : Various players in the nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification. Soil Sci. Plant Nutr., 54, 33 45.
    • (2008) Soil Sci. Plant Nutr. , vol.54 , pp. 33-45
    • Hayatsu, M.1    Tago, K.2    Saito, M.3
  • 7
    • 84946996855 scopus 로고
    • Distribution of free oxides along soil profiles in time series of dry rice fields in polder lands of Kojima-Basin
    • Kawaguchi K, Matsuo Y 1955a : Distribution of free oxides along soil profiles in time series of dry rice fields in polder lands of Kojima-Basin. Soil Plant Food, 1, 67 70.
    • (1955) Soil Plant Food , vol.1 , pp. 67-70
    • Kawaguchi, K.1    Matsuo, Y.2
  • 8
    • 84946983362 scopus 로고
    • Relationship between the amounts of free oxides and total oxides in profiles of dry rice fields in polder lands of Kojima-Basin
    • Kawaguchi K, Matsuo Y 1955b : Relationship between the amounts of free oxides and total oxides in profiles of dry rice fields in polder lands of Kojima-Basin. Soil Plant Food, 1, 71 74.
    • (1955) Soil Plant Food , vol.1 , pp. 71-74
    • Kawaguchi, K.1    Matsuo, Y.2
  • 9
    • 59149087857 scopus 로고
    • Some chemical and mineralogical studies on profiles of dry rice fields of polder land in Kojima Basin, Okayama prefecture
    • Kawaguchi K, Hattori T, Waki K 1957 : Some chemical and mineralogical studies on profiles of dry rice fields of polder land in Kojima Basin, Okayama prefecture. Soil Plant Food, 3, 7 14.
    • (1957) Soil Plant Food , vol.3 , pp. 7-14
    • Kawaguchi, K.1    Hattori, T.2    Waki, K.3
  • 10
    • 0002891608 scopus 로고    scopus 로고
    • Anaerobic microbiology in waterlogged rice fields
    • In. Vol. 10. Eds. Bollag J-M, Stotzky G., pp. Marcel Dekker, New York.
    • Kimura M 2000 : Anaerobic microbiology in waterlogged rice fields. In Soil Biochemistry, Vol. 10. Eds J-M Bollag, G Stotzky, pp. 35 138. Marcel Dekker, New York.
    • (2000) Soil Biochemistry , pp. 35-138
    • Kimura, M.1
  • 11
    • 0030831861 scopus 로고    scopus 로고
    • Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh
    • Munson MA, Nedwell DB, Embley TM 1997 : Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh. Appl. Environ. Microbiol., 63, 4729 4733.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4729-4733
    • Munson, M.A.1    Nedwell, D.B.2    Embley, T.M.3
  • 12
    • 27244451042 scopus 로고
    • Iron- and sulfur-oxidizing bacteria in oxidation and acidification of reclaimed soils: Laboratory experiments to elucidate roles of these two bacteria
    • (in Japanese with English summary).
    • Ogawa N, Inubushi K, Matsumoto S, Wada H, Takai Y 1990 : Iron- and sulfur-oxidizing bacteria in oxidation and acidification of reclaimed soils: laboratory experiments to elucidate roles of these two bacteria. Jpn. J. Soil Sci. Plant Nutr., 61, 42 47 (in Japanese with English summary).
    • (1990) Jpn. J. Soil Sci. Plant Nutr. , vol.61 , pp. 42-47
    • Ogawa, N.1    Inubushi, K.2    Matsumoto, S.3    Wada, H.4    Takai, Y.5
  • 13
    • 27244449739 scopus 로고    scopus 로고
    • Vertical distribution of physico-chemical properties and number of sulfur-oxidizing bacteria in the buried layer of soil profiles with marine-reduced sulfur compounds
    • Ohba H, Owa N 2005 : Vertical distribution of physico-chemical properties and number of sulfur-oxidizing bacteria in the buried layer of soil profiles with marine-reduced sulfur compounds. Soil Sci. Plant Nutr., 51, 379 388.
    • (2005) Soil Sci. Plant Nutr. , vol.51 , pp. 379-388
    • Ohba, H.1    Owa, N.2
  • 14
    • 0029853148 scopus 로고    scopus 로고
    • WWW-query: An on-line retrieval system for biological sequence banks
    • Perrière G, Gouy M 1996 : WWW-query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364 369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 15
    • 0036188405 scopus 로고    scopus 로고
    • Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary
    • Purdy KJ, Munson MA, Nedwell DB, Embley TM 2002 : Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary. FEMS Microbiol. Ecol., 39, 17 21.
    • (2002) FEMS Microbiol. Ecol. , vol.39 , pp. 17-21
    • Purdy, K.J.1    Munson, M.A.2    Nedwell, D.B.3    Embley, T.M.4
  • 16
    • 27244446663 scopus 로고
    • Iron- and sulfur-oxidizing bacteria in relation to leaching and oxidation of reclaimed soils at Nakaumi
    • (in Japanese with English summary).
    • Takai Y, Ogawa N, Takeuchi E et al. 1989 : Iron- and sulfur-oxidizing bacteria in relation to leaching and oxidation of reclaimed soils at Nakaumi. Jpn. J. Soil Sci. Plant Nutr., 60, 151 156 (in Japanese with English summary).
    • (1989) Jpn. J. Soil Sci. Plant Nutr. , vol.60 , pp. 151-156
    • Takai, Y.1    Ogawa, N.2    Takeuchi, E.3
  • 17
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk H-P, Schleper C 2005 : Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol., 7, 1985 1995.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.-P.5    Schleper, C.6
  • 18
    • 77956794958 scopus 로고
    • Sulfur oxidation in soils
    • Wainwright M 1984 : Sulfur oxidation in soils. Adv. Agron., 37, 349 396.
    • (1984) Adv. Agron. , vol.37 , pp. 349-396
    • Wainwright, M.1
  • 19
    • 1842576603 scopus 로고    scopus 로고
    • DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil
    • Watanabe T, Asakawa S, Nakamura A, Nagaoka K, Kimura M 2004 : DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol. Lett., 232, 153 163.
    • (2004) FEMS Microbiol. Lett. , vol.232 , pp. 153-163
    • Watanabe, T.1    Asakawa, S.2    Nakamura, A.3    Nagaoka, K.4    Kimura, M.5
  • 20
    • 33646270862 scopus 로고    scopus 로고
    • Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat)
    • Watanabe T, Kimura M, Asakawa S 2006 : Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat). Soil Biol. Biochem., 38, 1264 1274.
    • (2006) Soil Biol. Biochem. , vol.38 , pp. 1264-1274
    • Watanabe, T.1    Kimura, M.2    Asakawa, S.3
  • 21
    • 34547753462 scopus 로고    scopus 로고
    • Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils
    • Watanabe T, Kimura M, Asakawa S 2007 : Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils. Soil Biol. Biochem., 39, 2877 2887.
    • (2007) Soil Biol. Biochem. , vol.39 , pp. 2877-2887
    • Watanabe, T.1    Kimura, M.2    Asakawa, S.3
  • 22
    • 33646076727 scopus 로고    scopus 로고
    • Specific bacterial, archaeal and enkaryotic communities in tidal-flat sediments along a vertical profile of several meters
    • Wilms R, Sass H, Köpke B, Köster J, Cypionka H, Engelen B 2006 : Specific bacterial, archaeal and enkaryotic communities in tidal-flat sediments along a vertical profile of several meters. Appl. Environ. Microbiol., 72, 2756 2764.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 2756-2764
    • Wilms, R.1    Sass, H.2    Köpke, B.3    Köster, J.4    Cypionka, H.5    Engelen, B.6
  • 23
    • 59149103040 scopus 로고
    • Reports of the Laboratory of Soils and Fertilizers, Faculty of Agriculture, Okayama University No. 8. (in Japanese with English summary).
    • Yoneda S 1964 : Genetic and edaphologic studies of the polder soils in Japan. Reports of the Laboratory of Soils and Fertilizers, Faculty of Agriculture, Okayama University No. 8. (in Japanese with English summary).
    • (1964) Genetic and Edaphologic Studies of the Polder Soils in Japan
    • Yoneda, S.1
  • 24
    • 44849083800 scopus 로고    scopus 로고
    • Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I
    • Zhang G, Tian J, Jiang N, Guo X, Wang Y, Dong X 2008 : Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I. Environ. Microbiol., 10, 1850 1860.
    • (2008) Environ. Microbiol. , vol.10 , pp. 1850-1860
    • Zhang, G.1    Tian, J.2    Jiang, N.3    Guo, X.4    Wang, Y.5    Dong, X.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.