Diverse splicing pathways of the membrane IgHM pre-mRNA in a Chondrostean, the Siberian sturgeon

Developmental and Comparative Immunology

Volumn 33, Issue 4, 2009, Pages 507-515

  Lundqvist, Mats ^a   Strömberg, Siv ^a   Bouchenot, Catherine ^b   Pilström, Lars ^a   Boudinot, Pierre ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b INRA Institut National de la Recherche Agronomique   (France)

Author keywords

Acipenser baeri; B cell receptor; BCR evolution; Heavy chain; Immunoglobulin; Sturgeon; Transmembrane

Indexed keywords

DNA BINDING PROTEIN; IMMUNOGLOBULIN M; MESSENGER RNA; PROTEIN IGHM; UNCLASSIFIED DRUG;

ARTICLE; DNA SYNTHESIS; EXON; FISH; GENE SEQUENCE; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SPLICING; TELEOST;

ACIPENSER BAERII; TELEOSTEI; TETRAPODA;

EID: 58949094504     PISSN: 0145305X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dci.2008.10.009     Document Type: Article

References (30)

1. Reth M. Antigen receptors on B lymphocytes. Annu Rev Immunol 10 (1992) 97-121
2. Peterson M.L., and Perry R.P. The regulated production of mu m and mu s mRNA is dependent on the relative efficiencies of mu s poly(A) site usage and the c mu 4-to-M1 splice. Mol Cell Biol 9 (1989) 726-738
3. Early P., Rogers J., Davis M., Calame K., Bond M., Wall R., and Hood L. Two mRNAs can be produced from a single immunoglobulin mu gene by alternative RNA processing pathways. Cell 20 (1980) 313-319
4. Mount S.M. A catalogue of splice junction sequences. Nucleic Acids Res 10 (1982) 459-472
5. Warr G.W., and Marchalonis J.J. Lymphocyte surface immunoglobulin of the goldfish differs from its serum counterpart. Dev Comp Immunol 1 (1977) 15-22
6. Wilson M.R., Marcuz A., van Ginkel F., Miller N.W., Clem L.W., Middleton D., and Warr G.W. The immunoglobulin M heavy chain constant region gene of the channel catfish, Ictalurus punctatus: an unusual mRNA splice pattern produces the membrane form of the molecule. Nucleic Acids Res 18 (1990) 5227-5233
7. Bengten E., Leanderson T., and Pilstrom L. Immunoglobulin heavy chain cDNA from the teleost Atlantic cod (Gadus morhua L.): nucleotide sequences of secretory and membrane form show an unusual splicing pattern. Eur J Immunol 21 (1991) 3027-3033
8. Hordvik I., Voie A.M., Glette J., Male R., and Endresen C. Cloning and sequence analysis of two isotypic IgM heavy chain genes from Atlantic salmon, Salmo salar L. Eur J Immunol 22 (1992) 2957-2962
9. Lee M.A., Bengten E., Daggfeldt A., Rytting A.S., and Pilstrom L. Characterisation of rainbow trout cDNAs encoding a secreted and membrane-bound Ig heavy chain and the genomic intron upstream of the first constant exon. Mol Immunol 30 (1993) 641-648
10. Nakao M., and Yano T. Structural and functional identification of complement components of the bony fish, carp (Cyprinus carpio). Immunol Rev 166 (1998) 27-38
11. Ross D.A., Magor B.G., Middleton D.L., Wilson M.R., Miller N.W., Clem L.W., and Warr G.W. Characterization of Oct2 from the channel catfish: functional preference for a variant octamer motif. J Immunol 160 (1998) 3874-3882
12. Shen L., Stuge T., Evenhuis J., Bengtén E., Wilson M., Chinchar V., Clem L., and Miller N. Channel catfish NK-like cells are armed with IgM via a putative FcmicroR. Dev Comp Immunol 27 (2003) 699-714
13. Wilson M.R., van Ravenstein E., Miller N.W., Clem L.W., Middleton D.L., and Warr G.W. cDNA sequences and organization of IgM heavy chain genes in two holostean fish. Dev Comp Immunol 19 (1995) 153-164
14. Janvier P. Early vertebrates (1996), Oxford University Press, London
15. Lecointre G., and Le Guyader H. The tree of life (2006), Belknap Harvard, Harvard
16. Wilson M.R., Ross D.A., Miller N.W., Clem L.W., Middleton D.L., and Warr G.W. Alternate pre-mRNA processing pathways in the production of membrane IgM heavy chains in holostean fish. Dev Comp Immunol 19 (1995) 165-177
17. Sambrook J., Fritsch E., and Maniatis T. Molecular cloning. A laboratory manual (1989), Cold Spring Harbor Laboratory Press, New York
18. Lundqvist M., Bengten E., Stromberg S., and Pilstrom L. Ig light chain gene in the Siberian sturgeon (Acipenser baeri). J Immunol 157 (1996) 2031-2038
19. Campbell K.S., Backstrom B.T., Tiefenthaler G., and Palmer E. CART: a conserved antigen receptor transmembrane motif. Semin Immunol 6 (1994) 393-410
20. Lundqvist M.L., Stromberg S., and Pilstrom L. Ig heavy chain of the sturgeon Acipenser baeri: cDNA sequence and diversity. Immunogenetics 48 (1998) 372-382
21. Burge C.B., Padgett R.A., and Sharp P.A. Evolutionary fates and origins of U12-type introns. Mol Cell 2 (1998) 773-785
22. Mussmann R., Wilson M., Marcuz A., Courtet M., and Du Pasquier L. Membrane exon sequences of the three Xenopus Ig classes explain the evolutionary origin of mammalian isotypes. Eur J Immunol 26 (1996) 409-414
23. Guselnikov S.V., Najakshin A.M., and Taranin A.V. Fugu rubripes possesses genes for the entire set of the ITAM-bearing transmembrane signal subunits. Immunogenetics 55 (2003) 472-479
24. Inoue J.G., Miya M., Tsukamoto K., and Nishida M. Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol 26 (2003) 110-120
25. Vasil'yev V.P., Sokolov L.I., and Serebryakova Ye.V. Karyotypes of the Siberian sturgeon, Acipenser baeri, of the Lena river and some aspects of karyotype evolution in Acipenseriformes. J Ichthyol 20 (1981) 37-45
26. Roest Crollius H., Jaillon O., Bernot A., Pelletier E., Dasilva C., Bouneau L., Burge C., Yeh R.F., Quetier F., Saurin W., and Weissenbach J. Genome-wide comparisons between human and tetraodon. Ernst Schering Res Found Workshop (2002) 11-29
27. Chang Y.F., Imam J.S., and Wilkinson M.F. The nonsense-mediated decay RNA surveillance pathway. Annu Rev Biochem 76 (2007) 51-74
28. Szafranski K., Schindler S., Taudien S., Hiller M., Huse K., Jahn N., Schreiber S., Backofen R., and Platzer M. Violating the splicing rules: TG dinucleotides function as alternative 3′ splice sites in U2-dependent introns. Genome Biol 8 (2007) 154
29. Hsu E. The variation in immunoglobulin heavy chain constant regions in evolution. Semin Immunol 6 (1994) 383-391
30. Hendershot L., Bole D., Kohler G., and Kearney J.F. Assembly and secretion of heavy chains that do not associate posttranslationally with immunoglobulin heavy chain-binding protein. J Cell Biol 104 (1987) 761-767