Halorubrum californiense sp. nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 12, 2008, Pages 2710-2715

  Pesenti, Peter T ^a   Sikaroodi, Masoumeh ^a   Gillevet, Patrick M ^a   Sánchez Porro, Cristina ^b   Ventosa, Antonio ^b   Litchfield, Carol D ^a  

^a GEORGE MASON UNIVERSITY   (United States)

^b UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLGLYCEROL PHOSPHATE METHYL ESTER; PHOSPHATIDYLGLYCEROL SULFATE; RNA 16S; SULFATED DIGLYCOSYL DIETHER; UNCLASSIFIED DRUG; SEA WATER;

ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; HALOBACTERIUM; HALORUBRUM; HALORUBRUM CALIFORNIENSE; HALORUBRUM SODOMENSE; HALORUBRUM XINJIANGENSE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; POND; PRIORITY JOURNAL; RNA ANALYSIS; UNITED STATES; CLASSIFICATION; CRYSTALLIZATION; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; SPECIES DIFFERENCE;

ARCHAEA; HALORUBRUM; HALORUBRUM SODOMENSE; HALORUBRUM TRAPANICUM; HALORUBRUM XINJIANGENSE;

CALIFORNIA; CRYSTALLIZATION; HALORUBRUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SPECIES SPECIFICITY;

EID: 58949087139     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.2008/002410-0     Document Type: Article

References (43)

1. Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disc method. Am J Clin Pathol 45, 493-496.
2. Benlloch, S., López-López, A., Casamayor, E. O., Øvreås, L., Goddard, V., Daae, F. L., Smerdon, G., Massana, R., Joint, I. & other authors (2002). Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol 4, 349-360.
3. Brown, E. J. & Braddock, J. F. (1990). Sheen screen, a miniaturized most-probable-number method for enumeration of oil-degrading microorganisms. Appl Environ Microbiol 56, 3895-3896.
4. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006). Halorubrum orientale sp. nov., a halophilic archaeon isolated from Lake Ejinor, Inner Mongolia, China. Int J Syst Evol Microbiol 56, 2559-2563.
5. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2007). Halorubrum ejinorense sp. nov., isolated from Lake Ejinor, Inner Mongolia, China. Int J Syst Evol Microbiol 57, 2538-2542.
6. Cui, H.-L., Tohty, D., Zhou, P.-J. & Liu, S.-J. (2006). Halorubrum lipolyticum sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes in Xin-Jiang, China. Int J Syst Evol Microbiol 56, 1631-1634.
7. Cui, H.-L., Lin, Z.-Y., Dong, Y., Zhou, P.-J. & Liu, S.-J. (2007). Halorubrum litoreum sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57, 2204-2206.
8. Fan, H., Xue, Y., Ma, Y., Ventosa, A. & Grant, W. D. (2004). Halorubrum tibetense sp. nov., a novel haloalkaliphilic archaeon from Lake Zabuye in Tibet, China. Int J Syst Evol Microbiol 54, 1213-1216.
9. Feng, J., Zhou, P.-J. & Liu, S.-J. (2004). Halorubrum xinjiangense sp. nov., a novel halophile isolated from saline lakes in China. Int J Syst Evol Microbiol 54, 1789-1791.
10. Feng, J., Zhou, P., Zhou, Y.-G., Liu, S.-J. & Warren-Rhodes, K. (2005). Halorubrum alkaliphilum sp. nov., a novel haloalkaliphile isolated from a soda lake in Xinjiang, China. Int J Syst Evol Microbiol 55, 149-152.
11. Franzmann, P. D., Stackebrandt, E., Sanderson, K., Volkman, J. K., Cameron, D. E., Stevenson, P. L., McMeekin, T. A. & Burton, H. R. (1988). Halobacterium lacusprofundi sp. nov., a halophilic bacterium isolated from Deep Lake, Antarctica. Syst Appl Microbiol 11, 20-27.
12. Grant, W. D. & Ross, H. N. M. (1986). The ecology and taxonomy of halobacteria. FEMS Microbiol Rev 39, 9-15.
13. Grant, W. D., Kamekura, M., McGenity, T. J. & Ventosa, A. (2001). The order Halobacteriales. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 294-334. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
14. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655-681. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
15. Kamekura, M. (1998). Diversity of extremely halophilic bacteria. Extremophiles 2, 289-295.
16. Kamekura, M. & Dyall-Smith, M. L. (1995). Taxonomy of the family Halobacteriaceae and the description of two new genera Halorubrobacterium and Natrialba. J Gen Appl Microbiol 41, 333-350.
17. Kamekura, M., Dyall-Smith, M. L., Upasani, V., Ventosa, A. & Kates, M. (1997). Diversity of alkaliphilic halobacteria: proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb. nov., Natrialba magadii comb. nov., and Natronomonas pharaonis comb. nov., respectively. Int J Syst Bacteriol 47, 853-857.
18. Kharroub, K., Quesada, T., Ferrer, R., Fuentes, S., Aguilera, M., Boulahrouf, A., Ramos-Cormenzana, A. & Monteoliva-Sánchez, M. (2006). Halorubrum ezzemoulense sp. nov., a halophilic archaeon isolated from Ezzemoul sabkha, Algeria. Int J Syst Evol Microbiol 56, 1583-1588.
19. Litchfield, C. D. & Oren, A. (2001). Polar lipids and pigments as biomarkers for the study of the microbial community structure of solar salterns. Hydrobiologia 466, 81-89.
20. Litchfield, C. D., Sikaroodi, M. & Gillivet, P. (2005). The microbial diversity of a solar saltern on San Francisco Bay. In Adaptation to Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya, pp. 59-69. Edited by N. Gunde-Cimerman, A. Oren & A. Plemenitas. Dordrecht, The Netherlands: Springer.
21. Lizama, C., Monteoliva-Sánchez, M., Suárez-Garciá, A., RosellóMora, R., Aguilera, M., Campos, V. & Ramos-Cormenzana, A. (2002). Halorubrum tebenquichense sp. nov., a novel halophilic archaeon isolated from the Atacama Saltern, Chile. Int J Syst Evol Microbiol 52, 149-155.
22. Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M. & Schleifer, K.-H. (1998). Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19, 554-568.
23. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
24. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
25. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
26. McGenity, T. & Grant, W. D. (1995). Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb. nov. Syst Appl Microbiol 18, 237-243.
27. McGenity, T. J. & Grant, W. D. (2001). Genus VII. Halorubrum. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 320-324. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
28. Mormile, M. R., Romine, M. F., Garcia, M. T., Ventosa, A., Bailey, T. J. & Peyton, B. M. (1999). Halomonas campisalis sp. nov., a denitrifying, moderately haloalkaliphilic bacterium. Syst Appl Microbiol 22, 551-558.
29. Mwatha, W. E. & Grant, W. D. (1993). Natronobacterium vacuolata sp. nov., a haloalkaliphilic archaeon isolated from Lake Magadi, Kenya. Int J Syst Bacteriol 43, 401-404.
30. Ochsenreiter, T., Pfeifer, F. & Schleper, C. (2002). Diversity of Archaea in hypersaline environments characterized by molecularphylogenetic and cultivation studies. Extremophiles 6, 267-274.
31. Oren, A. (1983). Halobacterium sodomense sp. nov., a Dead Sea halobacterium with an extremely high magnesium requirement. Int J Syst Bacteriol 33, 381-386.
32. Oren, A. (2002a). Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J Ind Microbiol Biotechnol 28, 56-63.
33. Oren, A. (2002b). Molecular ecology of extremely halophilic Archaea and Bacteria. FEMS Microbiol Ecol 39, 1-7.
34. Oren, A. & Ventosa, A. (1996). A proposal for the transfer of Halorubrobacterium distributum and Halorubrobacterium coriense to the genus Halorubrum as Halorubrum distributum comb. nov. and Halorubrum coriense comb. nov., respectively. Int J Syst Bacteriol 46, 1180.
35. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
36. Owen, R. J. & Hill, L. R. (1979). The estimation of base compositions, base pairing and genome sizes of bacterial deoxyribonucleic acids. In Identification Methods for Microbiologists (Society for Applied Bacteriology Technical Series no. 14), 2nd edn, pp. 277-296. Edited by F. A. Skinner & D. W. Lovelock. London: Academic Press.
37. Soto, C. Y., Cama, M., Gibert, I. & Luquin, M. (2000). Application of an easy and reliable method for sulfolipid-I detection in the study of its distribution in Mycobacterium tuberculosis strains. FEMS Microbiol Lett 187, 103-107.
38. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
39. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
40. Tomlinson, G. A. & Hochstein, L. I. (1976). Halobacterium saccharovorum sp. nov., a carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 22, 587-591.
41. Ventosa, A., Gutiérrez, M. C., Kamekura, M. & Dyall-Smith, M. L. (1999). Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int J Syst Bacteriol 49, 131-136.
42. Ventosa, A., Gutiérrez, M. C., Kamekura, M., Zvyagintseva, I. S. & Oren, A. (2004). Taxonomic study of Halorubrum distributum and proposal of Halorubrum terrestre sp. nov. Int J Syst Evol Microbiol 54, 389-392.
43. Xu, X.-W., Wu, Y.-H., Zhang, H.-b. & Wu, M. (2007). Halorubrum arcis sp. nov., an extremely halophilic archaeon isolated from a saline lake on the Qinghai-Tibet Plateau, China. Int J Syst Evol Microbiol 57, 1069-1072.