A multiplex PCR method for rapid identification of Brachionus rotifers

Marine Biotechnology

Volumn 11, Issue 1, 2009, Pages 53-61

  Vasileiadou, Kalliopi ^a   Papakostas, Spiros ^a   Triantafyllidis, Alexander ^a   Kappas, Ilias ^a   Abatzopoulos, Theodore J ^a  

^a ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

COI mtDNA; Cryptic species; Hatchery strains; Specific primers

Indexed keywords

AMPLICON; BRACHIONUS; BRACHIONUS ROTIFERS; COI MTDNA; CRYPTIC SPECIES; CYTOCHROME C OXIDASE; DEOXYRIBONUCLEIC ACIDS; GENETIC METHODS; GENETIC POLYMORPHISMS; HATCHERY STRAINS; HIGHLY SENSITIVES; PCR METHODS; POLYMERASE CHAIN REACTIONS; RAPID IDENTIFICATIONS; SPECIFIC PRIMERS;

COSMIC RAYS; ORGANIC ACIDS; PLANTS (BOTANY); PUMPS;

BIODIVERSITY;

DNA;

BIOTYPE; COMMUNITY COMPOSITION; DNA; ENZYME; HATCHERY; METAZOAN; MORPHOLOGY; POLYMORPHISM;

ANIMAL; ARTICLE; CLASSIFICATION; GENE EXPRESSION REGULATION; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; ROTIFERA;

ANIMALS; BASE SEQUENCE; DNA; GENE EXPRESSION REGULATION; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; ROTIFERA;

BRACHIONUS; BRACHIONUS IBERICUS; BRACHIONUS PLICATILIS; BRACHIONUS SP. AUSTRIA; BRACHIONUS SP. CAYMAN; BRACHIONUS SP. MANJAVACAS; BRACHIONUS SP. NEVADA; ROTIFERA;

EID: 58849149028     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-008-9119-4     Document Type: Article

References (33)

1. A Araujo A Hagiwara 2005 Screening methods for improving rotifer culture quality Hydrobiologia 546 553 558
2. D Bickford DJ Lohman NS Sodhi PKL Ng R Meier K Winker KK Ingram I Das 2007 Cryptic species as a window on diversity and conservation Trends Ecol Evol 22 148 155
3. AM Derry PDN Hebert EE Prepas 2003 Evolution of rotifers in saline and subsaline lakes: a molecular phylogenetic approach Limnol Oceanogr 48 675 685
4. S Dooms S Papakostas S Hoffman D Delbare K Dierckens A Triantafyllidis T De Wolf O Vadstein TJ Abatzopoulos P Sorgeloos P Bossier 2007 Denaturing gradient gel electrophoresis (DGGE) as a tool for the characterisation of Brachionus sp. strains Aquaculture 262 29 40
5. M Dres J Mallet 2002 Host races in plant-feeding insects and their importance in sympatric speciation Philos Trans R Soc Lond B 357 471 492
6. O Folmer M Black R Hoeh R Lutz R Vrijenhoek 1994 DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates Mol Mar Biol Biotechnol 3 294 299
7. A Gomez 2005 Molecular ecology of rotifers: from population differentiation to speciation Hydrobiologia 546 83 99
8. A Gomez M Temprano M Serra 1995 Ecological genetics of a cyclical parthenogen in temporary habitats J Evol Biol 8 601 622
9. A Gomez C Clabby GR Carvalho 1998 Isolation and characterization of microsatellite loci in a cyclically parthenogenetic rotifer, Brachionus plicatilis Mol Ecol 7 1619 1621
10. A Gomez GR Carvalho DH Lunt 2000 Phylogeography and regional endemism of a passively dispersing zooplankter: mitochondrial DNA variation in rotifer resting egg banks Proc R Soc Lond B 267 2189 2197
11. A Gomez M Serra GR Carvalho DH Lunt 2002 Speciation in ancient cryptic species complexes: evidence from the molecular phylogeny of Brachionus plicatilis (Rotifera) Evolution 56 1431 1444
12. MP Hare SR Palumbi CA Butman 2000 Single-step species identification of bivalve larvae using multiplex polymerase chain reaction Mar Biol 137 953 961
13. O Henegariu NA Heerema SR Dlouhy GH Vance PH Vogt 1997 Multiplex PCR: critical parameters and step-by-step protocol Biotechniques 23 504 511
14. SN Jarman BE Deagle NJ Gales 2004 Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples Mol Ecol 13 1313 1322
15. JB Larsen ME Frischer LJ Rasmussen BW Hansen 2005 Single-step nested multiplex PCR to differentiate between various bivalve larvae Mar Biol 146 1119 1129
16. ZJ Liu JF Cordes 2004 DNA marker technologies and their applications in aquaculture genetics Aquaculture 238 1 37
17. E Lubzens A Tandler G Minkoff 1989 Rotifers as food in aquaculture Hydrobiologia 186/187 387 400
18. E Lubzens O Zmora Y Barr 2001 Biotechnology and aquaculture of rotifers Hydrobiologia 446/447 337 353
19. Mills S (2006) Investigations of the Brachionus plicatilis species complex, with particular reference to southwest Western Australia. Ph.D. thesis, University of Western Australia, Perth
20. S Mills DH Lunt A Gomez 2007 Global isolation by distance despite strong regional phylogeography in a small metazoan BMC Evol Biol 7 225
21. MR Miracle M Serra E Vicente C Blanco 1987 Distribution of Brachionus species in Spanish Mediterranean wetlands Hydrobiologia 147 75 81
22. R Ortells A Gomez M Serra 2003 Coexistence of cryptic rotifer species: ecological and genetic characterisation of Brachionus plicatilis Freshw Biol 48 2194 2202
23. Palumbi SR (1996) Nucleic acids II: the polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematics. Sinauer, Sunderland, MA, pp 205-247
24. S Papakostas A Triantafyllidis I Kappas TJ Abatzopoulos 2005 The utility of the 16S gene in investigating cryptic speciation within the Brachionus plicatilis species complex Mar Biol 147 1129 1139
25. S Papakostas S Dooms M Christodoulou A Triantafyllidis I Kappas K Dierckens P Bossier P Sorgeloos TJ Abatzopoulos 2006 Identification of cultured Brachionus rotifers based on RFLP and SSCP screening Mar Biotechnol 8 547 559
26. S Papakostas S Dooms A Triantafyllidis D Deloof I Kappas K Dierckens T De Wolf P Bossier O Vadstein S Kui P Sorgeloos TJ Abatzopoulos 2006 Evaluation of DNA methodologies in identifying Brachionus species used in European hatcheries Aquaculture 255 557 564
27. S Papakostas T De Wolf A Triantafyllidis K Vasileiadou D Kanellis P Cecconi I Kappas TJ Abatzopoulos 2007 Follow-up of hatchery rotifer cultures with regard to their genetic identity J Biol Res Thessalon 7 41 49
28. JG Patil RM Gunasekera BE Deagle NJ Bax 2005 Specific detection of Pacific oyster (Crassostrea gigas) larvae in plankton samples using nested polymerase chain reaction Mar Biotechnol 7 11 20
29. R Schoske PM Vallone CM Ruitberg JM Butler 2003 Multiplex PCR design strategy used for the simultaneous amplification of 10 Y chromosome short tandem repeat (STR) loci Anal Bioanal Chem 375 333 343
30. TW Snell 1986 Effect of temperature, salinity and food level on sexual and asexual reproduction in Brachionus plicatilis (Rotifera) Mar Biol 92 157 162
31. E Suatoni S Vicario S Rice T Snell A Caccone 2006 An analysis of species boundaries and biogeographic patterns in a cryptic species complex: the rotifer-Brachionus plicatilis Mol Phylogenet Evol 41 86 98
32. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
33. K Yoshimura K Tanaka T Yoshimatsu 2003 A novel culture system for the ultra-high-density production of the rotifer Brachionus rotundiformis-a preliminary report Aquaculture 227 165 172