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Volumn 9, Issue , 2008, Pages

A salmonid EST genomic study: Genes, duplications, phylogeny and microarrays

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TRANSCRIPTOME;

EID: 58849119169     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-545     Document Type: Article
Times cited : (140)

References (45)
  • 3
    • 22144452139 scopus 로고    scopus 로고
    • Hox clusters as models for vertebrate genome evolution
    • 10.1016/j.tig.2005.06.004 15967537
    • Hoegg S Myer A Hox clusters as models for vertebrate genome evolution Trends Genet 2005, 21:421-424. 10.1016/j.tig.2005.06.004 15967537
    • (2005) Trends Genet , vol.21 , pp. 421-424
    • Hoegg, S.1    Myer, A.2
  • 4
    • 0038175392 scopus 로고    scopus 로고
    • Basal euteleostean relationships: A mitogenomic perspective on the phylogenetic reality of the "Protacanthopterygii"
    • 10.1016/S1055-7903(02)00418-9
    • Ishiguro NB Miya M Nishida M Basal euteleostean relationships: A mitogenomic perspective on the phylogenetic reality of the "Protacanthopterygii" Molecular Phylogenetics and Evolution 2003, 27:476-488. 10.1016/S1055-7903(02)00418-9
    • (2003) Molecular Phylogenetics and Evolution , vol.27 , pp. 476-488
    • Ishiguro, N.B.1    Miya, M.2    Nishida, M.3
  • 5
    • 33646878378 scopus 로고    scopus 로고
    • Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs
    • 10.1007/s00239-005-0170-8 16752215
    • Steinke D Salzburger W Meyer A Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs J Mol Evol 2006, 62:772-784. 10.1007/s00239-005-0170-8 16752215
    • (2006) J Mol Evol , vol.62 , pp. 772-784
    • Steinke, D.1    Salzburger, W.2    Meyer, A.3
  • 6
    • 0002590589 scopus 로고
    • Tetraploidy and the evolution of salmonid fishes
    • New York, Plenum Press Turner BJ
    • Allendorf FW Thorgaard GH Tetraploidy and the evolution of salmonid fishes Evolutionary Genetics of Fishes New York, Plenum Press Turner BJ 1984, 1-53.
    • (1984) Evolutionary Genetics of Fishes , pp. 1-53
    • Allendorf, F.W.1    Thorgaard, G.H.2
  • 10
    • 27744471365 scopus 로고    scopus 로고
    • Evidence for Hox Gene Duplication in rainbow trout (Oncorhynchus mykiss): A tetraploid model species
    • 10.1007/s00239-004-0230-5 16315109
    • Moghadam HK Ferguson MM Danzmann RG Evidence for Hox Gene Duplication in rainbow trout (Oncorhynchus mykiss): A tetraploid model species J Mol Evol 2005, 61:804-818. 10.1007/s00239-004-0230-5 16315109
    • (2005) J Mol Evol , vol.61 , pp. 804-818
    • Moghadam, H.K.1    Ferguson, M.M.2    Danzmann, R.G.3
  • 11
    • 5144230930 scopus 로고    scopus 로고
    • Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes
    • 10.1139/g04-018 15284876
    • McKay SJ Trautner J Smith MJ Koop BF Devlin RH Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes Genome 2004, 47:714-723. 10.1139/g04-018 15284876
    • (2004) Genome , vol.47 , pp. 714-723
    • McKay, S.J.1    Trautner, J.2    Smith, M.J.3    Koop, B.F.4    Devlin, R.H.5
  • 13
    • 24644486449 scopus 로고    scopus 로고
    • Timing and mechanism of ancient vertebrate genome duplications - The adventure of a hypothesis
    • 10.1016/j.tig.2005.08.004 16099069
    • Panopoulou G Poustka AJ Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis Trends Genet 2005, 21:559-567. 10.1016/j.tig.2005.08.004 16099069
    • (2005) Trends Genet , vol.21 , pp. 559-567
    • Panopoulou, G.1    Poustka, A.J.2
  • 14
    • 15544377813 scopus 로고    scopus 로고
    • Genome evolution and biodiversity in teleost fish
    • 10.1038/sj.hdy.6800635 15674378
    • Volff JN Genome evolution and biodiversity in teleost fish Heredity 2005, 94:280-94. 10.1038/sj.hdy.6800635 15674378
    • (2005) Heredity , vol.94 , pp. 280-294
    • Volff, J.N.1
  • 15
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differs considerably between ray-finned fishes and land vertebrates
    • 341801 14757817 10.1073/pnas.0307968100
    • Vandepoele K De Vos W Taylor JS Meyer A Peer Van de Y Major events in the genome evolution of vertebrates: Paranome age and size differs considerably between ray-finned fishes and land vertebrates Proc Natl Acad Sci USA 2004, 101:1638-1643. 341801 14757817 10.1073/pnas.0307968100
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    De Vos, W.2    Taylor, J.S.3    Meyer, A.4    Peer, Y.5
  • 16
    • 33745067419 scopus 로고    scopus 로고
    • The gain and loss of genes during 600 million years of vertebrate evolution
    • 10.1186/gb-2006-7-5-r43
    • Blomme T Vandepoele K De Bodt S Simillion C Maere S Peer Van de Y The gain and loss of genes during 600 million years of vertebrate evolution Genome Biol 2006, 7:R43.1-12. 10.1186/gb-2006-7-5-r43
    • (2006) Genome Biol , vol.7
    • Blomme, T.1    Vandepoele, K.2    De Bodt, S.3    Simillion, C.4    Maere, S.5    Peer, Y.6
  • 17
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • 1460548 10101175
    • Force A Lynch M Pickett FB Amores A Yan YL Postlethwait J Preservation of duplicate genes by complementary, degenerative mutations Genetics 1999, 151:1531-1545. 1460548 10101175
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 21
    • 33748697895 scopus 로고    scopus 로고
    • Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalized rainbow trout cDNA libraries
    • 1564016 16887034 10.1186/1471-2164-7-196
    • Govoroun M Le Gac F Guiguen Y Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalized rainbow trout cDNA libraries BMC Genomics 2006, 7:196. 1564016 16887034 10.1186/ 1471-2164-7-196
    • (2006) BMC Genomics , vol.7 , pp. 196
    • Govoroun, M.1    Le Gac, F.2    Guiguen, Y.3
  • 22
    • 34447299402 scopus 로고    scopus 로고
    • Annotated expression sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource
    • 1913521 17605782 10.1186/1471-2164-8-209
    • Adzhubei AA Vlasova AV Hagen-Larsen H Ruden TA Laerdahl JK Hoyheim B Annotated expression sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource BMC Genomics 2007, 8:209. 1913521 17605782 10.1186/1471-2164-8-209
    • (2007) BMC Genomics , vol.8 , pp. 209
    • Adzhubei, A.A.1    Vlasova, A.V.2    Hagen-Larsen, H.3    Ruden, T.A.4    Laerdahl, J.K.5    Hoyheim, B.6
  • 24
  • 25
    • 23144435719 scopus 로고    scopus 로고
    • TargetIdentifier: A webserver for identifying full-length cDNAs from EST sequences
    • 1160197 15980559 10.1093/nar/gki436
    • Min XJ Butler G Storms R Tsang A TargetIdentifier: A webserver for identifying full-length cDNAs from EST sequences Nucl Acids Res 2005, 33:W669-72. 1160197 15980559 10.1093/nar/gki436
    • (2005) Nucl Acids Res , vol.33
    • Min, X.J.1    Butler, G.2    Storms, R.3    Tsang, A.4
  • 26
    • 1942453248 scopus 로고    scopus 로고
    • Molecular systematics of Salmonidae: Combined nuclear data yields a robust phylogeny
    • 10.1016/j.ympev.2003.08.012 15062801
    • Crespi BJ MJ Fulton Molecular systematics of Salmonidae: Combined nuclear data yields a robust phylogeny Mol Phylogenet Evol 2004, 31:658-679. 10.1016/j.ympev.2003.08.012 15062801
    • (2004) Mol Phylogenet Evol , vol.31 , pp. 658-679
    • Crespi, B.J.1    Fulton, M.J.2
  • 28
    • 0033113839 scopus 로고    scopus 로고
    • Phylogeny of Salmonine fishes based upon growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa
    • 10.1006/mpev.1998.0599 10196079
    • Oakley TH Phillips RB Phylogeny of Salmonine fishes based upon growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa Mol Phylogenet Evol 1999, 11:381-393. 10.1006/ mpev.1998.0599 10196079
    • (1999) Mol Phylogenet Evol , vol.11 , pp. 381-393
    • Oakley, T.H.1    Phillips, R.B.2
  • 29
    • 84953602718 scopus 로고
    • Phylogeny of the Pacific trouts and salmon (Oncorhynchus) and genera of the family Salmonidae
    • 10.1577/1548-8659(1993)122<0001:POTPTA>2.3.CO;2
    • Stearley RF Smith GR Phylogeny of the Pacific trouts and salmon (Oncorhynchus) and genera of the family Salmonidae Trans Am Fish Soc 1993, 122:1-36. 10.1577/1548-8659(1993)122<0001:POTPTA>2.3.CO;2
    • (1993) Trans Am Fish Soc , vol.122 , pp. 1-36
    • Stearley, R.F.1    Smith, G.R.2
  • 30
    • 0033833115 scopus 로고    scopus 로고
    • Genetic divergence and phylogeny of the Salmoninae based on allozyme data
    • Osinov AG Lebedev VS Genetic divergence and phylogeny of the Salmoninae based on allozyme data J Fish Biology 2000, 57:354-381.
    • (2000) J Fish Biology , vol.57 , pp. 354-381
    • Osinov, A.G.1    Lebedev, V.S.2
  • 32
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using PHRED. II. Error probabilities
    • 9521922
    • Ewing B Green P Base-calling of automated sequencer traces using PHRED. II. Error probabilities Genome Res 1998, 8:186-194. 9521922
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 33
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using PHRED. I. Accuracy assessment
    • 9521921
    • Ewing B Hillier L Wendl MC Green P Base-calling of automated sequencer traces using PHRED. I. Accuracy assessment Genome Res 1998, 8:175-185. 9521921
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 35
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 146917 9254694 10.1093/nar/25.17.3389
    • Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucl Acids Res 1997, 25:3389-3402. 146917 9254694 10.1093/nar/ 25.17.3389
    • (1997) Nucl Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 37
    • 0027249595 scopus 로고
    • dbEST - Database for "expressed sequence tags"
    • 10.1038/ng0893-332 8401577
    • Boguski MS Lowe TMJ Tolstoshev CM dbEST - database for "expressed sequence tags" Nat Genet 1993 4 332 333 10.1038/ng0893-332 8401577
    • (1993) Nat Genet , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.J.2    Tolstoshev, C.M.3
  • 39
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 310812 10508846 10.1101/gr.9.9.868
    • Huang X Madan A CAP3: A DNA sequence assembly program Genome Res 1999, 9:868-877. 310812 10508846 10.1101/gr.9.9.868
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 44
    • 0003437299 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.6
    • Department of Genome Sciences University of Washington, Seattle
    • Felsenstein J PHYLIP (Phylogeny Inference Package) version 3.6 Distributed by the author. Department of Genome Sciences University of Washington, Seattle 2004
    • (2004)
    • Felsenstein, J.1
  • 45
    • 84950646761 scopus 로고
    • The influence cure and its role in robust estimation
    • Hample FR: The influence cure and its role in robust estimation. J Amer Stat Assoc 1974, 69:383-393.
    • (1974) J Amer Stat Assoc , vol.69 , pp. 383-393
    • Hample, F.R.1


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