-
1
-
-
0037292622
-
Physical aspects of protein dynamics
-
Parak, F. G. 2003. Physical aspects of protein dynamics. Rep. Prog. Phys. 66:103-129.
-
(2003)
Rep. Prog. Phys
, vol.66
, pp. 103-129
-
-
Parak, F.G.1
-
2
-
-
0018793861
-
Temperature-dependent x-ray diffraction as a probe of protein structural dynamics
-
Frauenfelder, H., G. A. Petsko, and D. Tsernoglou. 1979. Temperature-dependent x-ray diffraction as a probe of protein structural dynamics. Nature. 280:558-563.
-
(1979)
Nature
, vol.280
, pp. 558-563
-
-
Frauenfelder, H.1
Petsko, G.A.2
Tsernoglou, D.3
-
3
-
-
0002131341
-
Evidence for conformational and diffusional mean square displacements in frozen aqueous solution of oxymyoglobin
-
Keller, H., and P. G. Debrunner. 1980. Evidence for conformational and diffusional mean square displacements in frozen aqueous solution of oxymyoglobin. Phys. Rev. Lett. 45:68-71.
-
(1980)
Phys. Rev. Lett
, vol.45
, pp. 68-71
-
-
Keller, H.1
Debrunner, P.G.2
-
4
-
-
0000464216
-
A consistent picture of protein dynamics
-
Parak, F., and E. W. Knapp. 1984. A consistent picture of protein dynamics. Proc. Natl. Acad. Sci. USA. 81:7088-7092.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 7088-7092
-
-
Parak, F.1
Knapp, E.W.2
-
5
-
-
0024976853
-
Dynamical transition of myoglobin revealed by inelastic neutron scattering
-
Doster, W., S. Cusack, and W. Petry. 1989. Dynamical transition of myoglobin revealed by inelastic neutron scattering. Nature. 337:754-756.
-
(1989)
Nature
, vol.337
, pp. 754-756
-
-
Doster, W.1
Cusack, S.2
Petry, W.3
-
6
-
-
0034595671
-
How soft is a protein? A protein dynamics force constant measured by neutron scattering
-
Zaccai, G. 2000. How soft is a protein? A protein dynamics force constant measured by neutron scattering. Science. 288:1604-1607.
-
(2000)
Science
, vol.288
, pp. 1604-1607
-
-
Zaccai, G.1
-
7
-
-
0016828929
-
Dynamics of ligand binding to myoglobin
-
Austin, R. H., K. W. Beeson, L. Eisenstein, H. Frauenfelder, and I. C. Gunsalus. 1975. Dynamics of ligand binding to myoglobin. Biochemistry. 14:5355-5373.
-
(1975)
Biochemistry
, vol.14
, pp. 5355-5373
-
-
Austin, R.H.1
Beeson, K.W.2
Eisenstein, L.3
Frauenfelder, H.4
Gunsalus, I.C.5
-
8
-
-
25844509913
-
Ultrafast and low barrier motions in the photoreactions of the green fluorescent protein
-
van Thor, J., G. Y. Georgiev, M. Towrie, and J. T. Sage. 2005. Ultrafast and low barrier motions in the photoreactions of the green fluorescent protein. J. Biol. Chem. 280:33652-33659.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 33652-33659
-
-
van Thor, J.1
Georgiev, G.Y.2
Towrie, M.3
Sage, J.T.4
-
9
-
-
0026720247
-
Crystalline ribonuclease a loses function below the dynamical transition at 220 K
-
Rasmussen, B. F., A. M. Stock, D. Ringe, and G. A. Petsko. 1992. Crystalline ribonuclease a loses function below the dynamical transition at 220 K. Nature. 357:423-424.
-
(1992)
Nature
, vol.357
, pp. 423-424
-
-
Rasmussen, B.F.1
Stock, A.M.2
Ringe, D.3
Petsko, G.A.4
-
10
-
-
0031784421
-
Enzyme activity below the dynamical transition at 220 K
-
Daniel, R. M., J. C. Smith, M. Ferrand, S. Hery, R. Dunn, and J. L. Finney. 1998. Enzyme activity below the dynamical transition at 220 K. Biophys. J. 75:2504-2507.
-
(1998)
Biophys. J
, vol.75
, pp. 2504-2507
-
-
Daniel, R.M.1
Smith, J.C.2
Ferrand, M.3
Hery, S.4
Dunn, R.5
Finney, J.L.6
-
11
-
-
19044399611
-
Role of protein-water hydrogen bond dynamics in the protein dynamical transition
-
Tarek, M., and D. J. Tobias. 2002. Role of protein-water hydrogen bond dynamics in the protein dynamical transition. Phys. Rev. Lett. 88:138101.
-
(2002)
Phys. Rev. Lett
, vol.88
, pp. 138101
-
-
Tarek, M.1
Tobias, D.J.2
-
12
-
-
0037058913
-
Slaving: Solvent fluctuations dominate protein dynamics and functions
-
Fenimore, P. W., H. Frauenfelder, B. H. McMahon, and F. G. Parak. 2002. Slaving: solvent fluctuations dominate protein dynamics and functions. Proc. Natl. Acad. Sci. USA. 99:16047-16051.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16047-16051
-
-
Fenimore, P.W.1
Frauenfelder, H.2
McMahon, B.H.3
Parak, F.G.4
-
13
-
-
33646200456
-
Investigating the local flexibility of functional residues in hemoproteins
-
Sacquin-Mora, S., and R. Lavery. 2006. Investigating the local flexibility of functional residues in hemoproteins. Biophys. J. 90:2706-2717.
-
(2006)
Biophys. J
, vol.90
, pp. 2706-2717
-
-
Sacquin-Mora, S.1
Lavery, R.2
-
14
-
-
1842618422
-
Hemoglobins: O2 uptake and transport
-
Marcel-Dekker, New York
-
Sage, J. T. 2004. Hemoglobins: O2 uptake and transport. In Encyclopedia of Supramolecular Chemistry, Marcel-Dekker, New York.
-
(2004)
Encyclopedia of Supramolecular Chemistry
-
-
Sage, J.T.1
-
15
-
-
85031353492
-
Cytochrome
-
c:, University Science Books, Sausalito, CA
-
Scott, R. A., and A. G. Mauk. 1995. Cytochrome c: A Multidisciplinary Approach. University Science Books, Sausalito, CA.
-
(1995)
Multidisciplinary Approach
, vol.A
-
-
Scott, R.A.1
Mauk, A.G.2
-
16
-
-
0025146477
-
High-resolution refinement of yeast iso-1-cytochrome c and comparisons with other eukaryotic cytochromes c
-
Louie, G. V., and G. D. Brayer. 1990. High-resolution refinement of yeast iso-1-cytochrome c and comparisons with other eukaryotic cytochromes c. J. Mol. Biol. 214:527-555.
-
(1990)
J. Mol. Biol
, vol.214
, pp. 527-555
-
-
Louie, G.V.1
Brayer, G.D.2
-
17
-
-
0026608669
-
Oxidation state-dependent conformational changes in cytochrome c
-
Berghuis, A. M., and G. D. Brayer. 1992. Oxidation state-dependent conformational changes in cytochrome c. J. Mol. Biol. 223:959-976.
-
(1992)
J. Mol. Biol
, vol.223
, pp. 959-976
-
-
Berghuis, A.M.1
Brayer, G.D.2
-
18
-
-
0030878055
-
Solution structure of oxidized horse heart cytochrome c
-
Banci, L., I. Bertini, H. B. Gray, C. Luchinat, T. Reddig, A. Rosato, and P. Turano. 1997. Solution structure of oxidized horse heart cytochrome c. Biochemistry. 36:9867-9877.
-
(1997)
Biochemistry
, vol.36
, pp. 9867-9877
-
-
Banci, L.1
Bertini, I.2
Gray, H.B.3
Luchinat, C.4
Reddig, T.5
Rosato, A.6
Turano, P.7
-
19
-
-
0032911155
-
Solution structure of reduced horse heart cytochrome c
-
Banci, L., I. Bertini, J. G. Huber, G. A. Spyroulias, and P. Turano. 1999. Solution structure of reduced horse heart cytochrome c. J. Biol. Inorg. Chem. 4:21-31.
-
(1999)
J. Biol. Inorg. Chem
, vol.4
, pp. 21-31
-
-
Banci, L.1
Bertini, I.2
Huber, J.G.3
Spyroulias, G.A.4
Turano, P.5
-
20
-
-
85031363980
-
-
Schejter, A. 1996. Oxidation state-dependent properties of cytochrome c. In Cytochrome c: A Multidisciplinary Approach, Chapt. 8. University Science Books, Sausalito, CA.
-
Schejter, A. 1996. Oxidation state-dependent properties of cytochrome c. In Cytochrome c: A Multidisciplinary Approach, Chapt. 8. University Science Books, Sausalito, CA.
-
-
-
-
21
-
-
0013253713
-
Determination of iron-ligand bond lengths in ferric and ferrous horse heart cytochrome c using multiple-scattering analyses of XAFS data
-
Cheng, M.-C., A. M. Rich, R. S. Armstrong, P. J. Ellis, and P. A. Lay. 1999. Determination of iron-ligand bond lengths in ferric and ferrous horse heart cytochrome c using multiple-scattering analyses of XAFS data. Inorg. Chem. 38:5703-5708.
-
(1999)
Inorg. Chem
, vol.38
, pp. 5703-5708
-
-
Cheng, M.-C.1
Rich, A.M.2
Armstrong, R.S.3
Ellis, P.J.4
Lay, P.A.5
-
22
-
-
0031461342
-
Differences in the dynamics of oxidized and reduced cytochrome c measured by Mössbauer spectroscopy
-
Frolov, E. N., R. Gvodsev, V. I. Goldanskii, and F. G. Parak. 1997. Differences in the dynamics of oxidized and reduced cytochrome c measured by Mössbauer spectroscopy. J. Biol. Inorg. Chem. 2:710-713.
-
(1997)
J. Biol. Inorg. Chem
, vol.2
, pp. 710-713
-
-
Frolov, E.N.1
Gvodsev, R.2
Goldanskii, V.I.3
Parak, F.G.4
-
23
-
-
28844487442
-
Large oxidation dependence observed in terahertz dielectric response for cytochrome c
-
Chen, J. Y., J. R. Knab, J. Cerne, and A. G. Markelz. 2005. Large oxidation dependence observed in terahertz dielectric response for cytochrome c. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 72:040901.
-
(2005)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys
, vol.72
, pp. 040901
-
-
Chen, J.Y.1
Knab, J.R.2
Cerne, J.3
Markelz, A.G.4
-
24
-
-
0037028941
-
Protein dynamics and cytochrome c: Correlations between ligand vibrations and redox activity
-
Chin, J. K., R. Jimenez, and F. E. Romesberg. 2002. Protein dynamics and cytochrome c: correlations between ligand vibrations and redox activity. J. Am. Chem. Soc. 124:1846-1847.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 1846-1847
-
-
Chin, J.K.1
Jimenez, R.2
Romesberg, F.E.3
-
25
-
-
1342263529
-
Nuclear resonant spectroscopy
-
Sturhahn, W. 2004. Nuclear resonant spectroscopy. J. Phys. Condens. Matter. 16:S497-S530.
-
(2004)
J. Phys. Condens. Matter
, vol.16
-
-
Sturhahn, W.1
-
26
-
-
0035959154
-
Nuclear resonance vibrational spectroscopy of a protein active-site mimic
-
Sage, J. T., C. Paxson, G. R. A. Wyllie, W. Sturhahn, S. M. Durbin, P. M. Champion, E. E. Alp, and W. R. Scheidt. 2001. Nuclear resonance vibrational spectroscopy of a protein active-site mimic. J. Phys. Condens. Matter. 13:7707-7722.
-
(2001)
J. Phys. Condens. Matter
, vol.13
, pp. 7707-7722
-
-
Sage, J.T.1
Paxson, C.2
Wyllie, G.R.A.3
Sturhahn, W.4
Durbin, S.M.5
Champion, P.M.6
Alp, E.E.7
Scheidt, W.R.8
-
27
-
-
0035118232
-
Protein flexibility from the dynamical transition: A force constant analysis
-
Bicout, D. J., and G. Zaccai. 2001. Protein flexibility from the dynamical transition: a force constant analysis. Biophys. J. 80:1115-1123.
-
(2001)
Biophys. J
, vol.80
, pp. 1115-1123
-
-
Bicout, D.J.1
Zaccai, G.2
-
31
-
-
0003860275
-
-
Cambridge University Press, Cambridge, UK
-
Cranshaw, T. E., B. W. Dale, G. O. Longworth, and C. E. Johnson. 1985. Mössbauer Spectroscopy and its Applications. Cambridge University Press, Cambridge, UK.
-
(1985)
Mössbauer Spectroscopy and its Applications
-
-
Cranshaw, T.E.1
Dale, B.W.2
Longworth, G.O.3
Johnson, C.E.4
-
32
-
-
0022555897
-
Mössbauer effect in the study of structure dynamics
-
Parak, F., and L. Reinisch. 1986. Mössbauer effect in the study of structure dynamics. Methods Enzymol. 131:568-607.
-
(1986)
Methods Enzymol
, vol.131
, pp. 568-607
-
-
Parak, F.1
Reinisch, L.2
-
34
-
-
0025938315
-
Protein dynamics: Comparison of simulations with inelastic neutron scattering experiments
-
Smith, J. C. 1991. Protein dynamics: comparison of simulations with inelastic neutron scattering experiments. Q. Rev. Biophys. 24:227-291.
-
(1991)
Q. Rev. Biophys
, vol.24
, pp. 227-291
-
-
Smith, J.C.1
-
35
-
-
0036880187
-
Protein dynamics studied by neutron scattering
-
Gabel, F., D. Bicout, U. Lehnert, M. Tehei, M. Weik, and G. Zaccai. 2002. Protein dynamics studied by neutron scattering. Q. Rev. Biophys. 35:327-367.
-
(2002)
Q. Rev. Biophys
, vol.35
, pp. 327-367
-
-
Gabel, F.1
Bicout, D.2
Lehnert, U.3
Tehei, M.4
Weik, M.5
Zaccai, G.6
-
36
-
-
0037763992
-
Collective chain dynamics in lipid bilayers by inelastic x-ray scattering
-
Weiss, T. M., P.-J. Chen, H. Sinn, E. E. Alp, S.-H. Chen, and H. W. Huang. 2003. Collective chain dynamics in lipid bilayers by inelastic x-ray scattering. Biophys. J. 84:3767-3776.
-
(2003)
Biophys. J
, vol.84
, pp. 3767-3776
-
-
Weiss, T.M.1
Chen, P.-J.2
Sinn, H.3
Alp, E.E.4
Chen, S.-H.5
Huang, H.W.6
-
37
-
-
33744473301
-
Counter-ions between charged polymers exhibit liquid-like organization and dynamics
-
Angelini, T. E., R. Golestanian, R. H. Coridan, J. C. Butler, A. Beraud, M. Krisch, H. Sinn, K. S. Schweizer, and G. C. Wong. 2006. Counter-ions between charged polymers exhibit liquid-like organization and dynamics. Proc. Natl. Acad. Sci. USA. 103:7962-7967.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 7962-7967
-
-
Angelini, T.E.1
Golestanian, R.2
Coridan, R.H.3
Butler, J.C.4
Beraud, A.5
Krisch, M.6
Sinn, H.7
Schweizer, K.S.8
Wong, G.C.9
-
38
-
-
0020333863
-
Protein dynamics: Mössbauer spectroscopy on deoxymyoglobin crystals
-
Parak, F., E. W. Knapp, and D. Kucheida. 1982. Protein dynamics: Mössbauer spectroscopy on deoxymyoglobin crystals. J. Mol. Biol. 161:177-194.
-
(1982)
J. Mol. Biol
, vol.161
, pp. 177-194
-
-
Parak, F.1
Knapp, E.W.2
Kucheida, D.3
-
43
-
-
0016751802
-
Cytochrome c interaction with membranes
-
Vanderkooi, J. M., and M. Erecinska. 1975. Cytochrome c interaction with membranes. Eur. J. Biochem. 60:199-207.
-
(1975)
Eur. J. Biochem
, vol.60
, pp. 199-207
-
-
Vanderkooi, J.M.1
Erecinska, M.2
-
44
-
-
85031356808
-
Some observations on the use of hydrogen fluoride in cytochrome degradation and synthesis
-
University Park Press, Baltimore, MD
-
Robinson, A. B., and M. D. Kamen. 1968. Some observations on the use of hydrogen fluoride in cytochrome degradation and synthesis. Struct. Funct. Cytochromes Proc. Symp. 1967, University Park Press, Baltimore, MD.
-
(1967)
Struct. Funct. Cytochromes Proc. Symp
-
-
Robinson, A.B.1
Kamen, M.D.2
-
45
-
-
0015919686
-
On the role of heme in the formation of the structure of cytochrome c
-
Fisher, W. R., H. Taniuchi, and C. B. Anfinsen. 1973. On the role of heme in the formation of the structure of cytochrome c. J. Biol. Chem. 248:3188-3195.
-
(1973)
J. Biol. Chem
, vol.248
, pp. 3188-3195
-
-
Fisher, W.R.1
Taniuchi, H.2
Anfinsen, C.B.3
-
47
-
-
1542508145
-
Hemin of the oxygen-transferring respiratory enzyme, some artificial hemoglobins and Spirographis porphyrin
-
Warburg, O., and E. Negelein. 1932. Hemin of the oxygen-transferring respiratory enzyme, some artificial hemoglobins and Spirographis porphyrin. Biochem. Z. 244:9-32.
-
(1932)
Biochem. Z
, vol.244
, pp. 9-32
-
-
Warburg, O.1
Negelein, E.2
-
48
-
-
85031347070
-
-
Flatmark, T., and A. B. Robinson. 1968. Circular dichroic absorption spectra of cytochrome c from bovine heart and cytochrome c2 from Rhodospirillum rubrum. Struct. Funct. Cytochromes Proc. Symp. 1967, University Park Press, Baltimore, MD.
-
Flatmark, T., and A. B. Robinson. 1968. Circular dichroic absorption spectra of cytochrome c from bovine heart and cytochrome c2 from Rhodospirillum rubrum. Struct. Funct. Cytochromes Proc. Symp. 1967, University Park Press, Baltimore, MD.
-
-
-
-
49
-
-
61349179582
-
-
PhD thesis, Massachusetts Institute of Technology, Boston, MA
-
Koch, S. A. 1975. Iron macrocycle complexes. PhD thesis, Massachusetts Institute of Technology, Boston, MA.
-
(1975)
Iron macrocycle complexes
-
-
Koch, S.A.1
-
50
-
-
84984109619
-
On the solvent-free iron(II)-acetate
-
Hardt, V. H. D., and W. Möller. 1961. On the solvent-free iron(II)-acetate. Z. Anorg. Allg. Chem. 313:57-69.
-
(1961)
Z. Anorg. Allg. Chem
, vol.313
, pp. 57-69
-
-
Hardt, V.H.D.1
Möller, W.2
-
51
-
-
0035926230
-
Long-range reactive dynamics in myoglobin
-
Sage, J. T., S. M. Durbin, W. Sturhahn, D. C. Wharton, P. M. Champion, P. Hession, J. Sutter, and E. E. Alp. 2001. Long-range reactive dynamics in myoglobin. Phys. Rev. Lett. 86:4966-4969.
-
(2001)
Phys. Rev. Lett
, vol.86
, pp. 4966-4969
-
-
Sage, J.T.1
Durbin, S.M.2
Sturhahn, W.3
Wharton, D.C.4
Champion, P.M.5
Hession, P.6
Sutter, J.7
Alp, E.E.8
-
52
-
-
49749199032
-
Cleavage of the heme-protein link by acid methylethylketone
-
Teale, F. W. J. 1959. Cleavage of the heme-protein link by acid methylethylketone. Biochim. Biophys. Acta. 35:543-550.
-
(1959)
Biochim. Biophys. Acta
, vol.35
, pp. 543-550
-
-
Teale, F.W.J.1
-
53
-
-
56749137471
-
Nuclear Resonance Vibrational Spectroscopy (NRVS)
-
Wiley, Chichester, UK
-
Zeng, W., N. J. Silvernail, W. R. Scheidt, and J. T. Sage. 2007. Nuclear Resonance Vibrational Spectroscopy (NRVS). Applications of Physical Methods to Inorganic and Bioinorganic Chemistry. Wiley, Chichester, UK.
-
(2007)
Applications of Physical Methods to Inorganic and Bioinorganic Chemistry
-
-
Zeng, W.1
Silvernail, N.J.2
Scheidt, W.R.3
Sage, J.T.4
-
54
-
-
0000632860
-
Mössbauer sum rules for use with synchrotron sources
-
Lipkin, H. J. 1995. Mössbauer sum rules for use with synchrotron sources. Phys. Rev. B. 52:10073-10079.
-
(1995)
Phys. Rev. B
, vol.52
, pp. 10073-10079
-
-
Lipkin, H.J.1
-
55
-
-
0000914315
-
Phonon density of states measured by inelastic nuclear resonant scattering
-
Sturhahn, W., T. S. Toellner, E. E. Alp, X. Zhang, M. Ando, Y. Yoda, S. Kikuta, M. Seto, C. W. Kimball, and B. Dabrowski. 1995. Phonon density of states measured by inelastic nuclear resonant scattering. Phys. Rev. Lett. 74:3832-3835.
-
(1995)
Phys. Rev. Lett
, vol.74
, pp. 3832-3835
-
-
Sturhahn, W.1
Toellner, T.S.2
Alp, E.E.3
Zhang, X.4
Ando, M.5
Yoda, Y.6
Kikuta, S.7
Seto, M.8
Kimball, C.W.9
Dabrowski, B.10
-
56
-
-
0034454505
-
CONUSS and PHOENIX: Evaluation of nuclear resonant scattering data
-
Sturhahn, W. 2000. CONUSS and PHOENIX: evaluation of nuclear resonant scattering data. Hyp. Intl. 125:149-172.
-
(2000)
Hyp. Intl
, vol.125
, pp. 149-172
-
-
Sturhahn, W.1
-
57
-
-
36149075804
-
Determination of the single-scattering probability distribution from plural-scattering data
-
Johnson, D. W., and J. C. H. Spence. 1974. Determination of the single-scattering probability distribution from plural-scattering data. J. Phys. D. 7:771-780.
-
(1974)
J. Phys. D
, vol.7
, pp. 771-780
-
-
Johnson, D.W.1
Spence, J.C.H.2
-
58
-
-
37649026987
-
Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect
-
Achterhold, K., C. Keppler, A. Ostermann, U. van Bürck, W. Sturhahn, E. E. Alp, and F. G. Parak. 2002. Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 65:051916.
-
(2002)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys
, vol.65
, pp. 051916
-
-
Achterhold, K.1
Keppler, C.2
Ostermann, A.3
van Bürck, U.4
Sturhahn, W.5
Alp, E.E.6
Parak, F.G.7
-
59
-
-
34147126398
-
Molecular dynamics study on the solvent dependent heme cooling following ligand photolysis in carbonmonoxy myoglobin
-
Zhang, Y., H. Fujisaki, and J. E. Straub. 2007. Molecular dynamics study on the solvent dependent heme cooling following ligand photolysis in carbonmonoxy myoglobin. J. Phys. Chem. B. 111:3243-3250.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 3243-3250
-
-
Zhang, Y.1
Fujisaki, H.2
Straub, J.E.3
-
60
-
-
0042322523
-
Vibrational frequency shifts and relaxation rates for a selected vibrational mode in cytochrome c
-
Bu, L., and J. E. Straub. 2003. Vibrational frequency shifts and relaxation rates for a selected vibrational mode in cytochrome c. Biophys. J. 85:1429-1439.
-
(2003)
Biophys. J
, vol.85
, pp. 1429-1439
-
-
Bu, L.1
Straub, J.E.2
-
61
-
-
0344493759
-
Simulating vibrational energy flow in proteins: Relaxation rate and mechanism for heme cooling in cytochrome c
-
Bu, L., and J. Straub. 2003. Simulating vibrational energy flow in proteins: relaxation rate and mechanism for heme cooling in cytochrome c. J. Phys. Chem. B. 107:12339-12345.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 12339-12345
-
-
Bu, L.1
Straub, J.2
-
62
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B. R., R. Bruccoleri, B. Olafson, D. States, S. Swaminathan, and M. Karplus. 1983. CHARMM: a program for macromolecular energy, minimization and dynamics calculations. J. Comput. Phys. 4:187-217.
-
(1983)
J. Comput. Phys
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaminathan, S.5
Karplus, M.6
-
63
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
Bushnell, G. W., G. V. Louie, and G. D. Brayer. 1990. High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 214:585-595.
-
(1990)
J. Mol. Biol
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
-
64
-
-
0041784950
-
-
MacKerell, A. D., Jr., D. Bashford, M. Bellott, R. L. Dunbrack, Jr., J. Evanseck, M. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. Lau, C. Mattos, S. Michnick, T. Ngo, D. Nguyen, B. Prodhom, I. W. E. Reiher, B. Roux, M. Schlenkrich, J. Smith, R. Stote, J. E. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus. 1998. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:3586-3616.
-
MacKerell, A. D., Jr., D. Bashford, M. Bellott, R. L. Dunbrack, Jr., J. Evanseck, M. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. Lau, C. Mattos, S. Michnick, T. Ngo, D. Nguyen, B. Prodhom, I. W. E. Reiher, B. Roux, M. Schlenkrich, J. Smith, R. Stote, J. E. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus. 1998. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:3586-3616.
-
-
-
-
65
-
-
0030691160
-
A molecular dynamics study in explicit water of the reduced and oxidized forms of yeast iso-1-cytochrome c: Solvation and dynamics properties of the two oxidized states
-
Banci, L., G. Gori-Savellini, and P. Turano. 1997. A molecular dynamics study in explicit water of the reduced and oxidized forms of yeast iso-1-cytochrome c: solvation and dynamics properties of the two oxidized states. Eur. J. Biochem. 249:716-723.
-
(1997)
Eur. J. Biochem
, vol.249
, pp. 716-723
-
-
Banci, L.1
Gori-Savellini, G.2
Turano, P.3
-
66
-
-
0023042853
-
X-ray structure and refinement of carbon-monoxy (Fe-II)-myoglobin at 1.5 Å resolution
-
Kuriyan, J., S. Wilz, M. Karplus, and G. A. Petsko. 1986. X-ray structure and refinement of carbon-monoxy (Fe-II)-myoglobin at 1.5 Å resolution. J. Mol. Biol. 192:133-154.
-
(1986)
J. Mol. Biol
, vol.192
, pp. 133-154
-
-
Kuriyan, J.1
Wilz, S.2
Karplus, M.3
Petsko, G.A.4
-
67
-
-
0033574735
-
A steric mechanism for inhibition of CO binding to heme proteins
-
Kachalova, G. S., A. N. Popov, and H. D. Bartunik. 1999. A steric mechanism for inhibition of CO binding to heme proteins. Science. 284:473-476.
-
(1999)
Science
, vol.284
, pp. 473-476
-
-
Kachalova, G.S.1
Popov, A.N.2
Bartunik, H.D.3
-
68
-
-
0028077565
-
Crystal structure of photolyzed carbonmonoxy-myoglobin
-
Schlichting, I., J. Berendzen, G. N. Phillips, Jr., and R. M. Sweet. 1994. Crystal structure of photolyzed carbonmonoxy-myoglobin. Nature. 371:808-812.
-
(1994)
Nature
, vol.371
, pp. 808-812
-
-
Schlichting, I.1
Berendzen, J.2
Phillips Jr., G.N.3
Sweet, R.M.4
-
69
-
-
0037054838
-
NO rebinding to myoglobin: A reactive molecular dynamics study
-
Meuwly, M., O. M. Becker, R. Stote, and M. Karplus. 2002. NO rebinding to myoglobin: a reactive molecular dynamics study. Biophys. Chem. 98:183-207.
-
(2002)
Biophys. Chem
, vol.98
, pp. 183-207
-
-
Meuwly, M.1
Becker, O.M.2
Stote, R.3
Karplus, M.4
-
70
-
-
22944467757
-
Computer "experiments" on classical fluids. I. Thermodynamical properties of Lennard-Jones molecules
-
Verlet, L. 1967. Computer "experiments" on classical fluids. I. Thermodynamical properties of Lennard-Jones molecules. Phys. Rev. 159:98-103.
-
(1967)
Phys. Rev
, vol.159
, pp. 98-103
-
-
Verlet, L.1
-
71
-
-
33646650705
-
Reversible multiple time scale molecular dynamics
-
Tuckerman, M., B. Berne, and G. Martyna. 1992. Reversible multiple time scale molecular dynamics. J. Chem. Phys. 97:1990-2001.
-
(1992)
J. Chem. Phys
, vol.97
, pp. 1990-2001
-
-
Tuckerman, M.1
Berne, B.2
Martyna, G.3
-
73
-
-
0344226399
-
Mössbauer and magnetization studies of heme-copper-bridged assemblies pertinent to cytochrome c oxidase
-
Kauffmann, K., C. Goddard, A. Christine, Y. Zang, R. Holm, and E. Munck. 1997. Mössbauer and magnetization studies of heme-copper-bridged assemblies pertinent to cytochrome c oxidase. Inorg. Chem. 36:985-993.
-
(1997)
Inorg. Chem
, vol.36
, pp. 985-993
-
-
Kauffmann, K.1
Goddard, C.2
Christine, A.3
Zang, Y.4
Holm, R.5
Munck, E.6
-
74
-
-
0030945313
-
The membrane-bound high-molecular-mass cytochromes c from Desulfovibrio gigas and Desulfovibrio vulgaris Hildenborough; EPR and Mössbauer studies
-
Pereira, I. A. C., J. LeGall, A. V. Xavier, and M. Teixeira. 1997. The membrane-bound high-molecular-mass cytochromes c from Desulfovibrio gigas and Desulfovibrio vulgaris Hildenborough; EPR and Mössbauer studies. J. Biol. Inorg. Chem. 2:23-31.
-
(1997)
J. Biol. Inorg. Chem
, vol.2
, pp. 23-31
-
-
Pereira, I.A.C.1
LeGall, J.2
Xavier, A.V.3
Teixeira, M.4
-
75
-
-
0028972074
-
Mössbauer characterization of Paracoccus denitrificans cytochrome c peroxidase: Further evidence for redox and calcium binding-induced heme-heme interaction
-
Prazeres, S., J. J. Moura, I. Moura, R. Gilmour, C. F. Goodhew, G. W. Pettigrew, N. Ravi, and B. H. Huynh. 1995. Mössbauer characterization of Paracoccus denitrificans cytochrome c peroxidase: further evidence for redox and calcium binding-induced heme-heme interaction. J. Biol. Chem. 270:24264-24269.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 24264-24269
-
-
Prazeres, S.1
Moura, J.J.2
Moura, I.3
Gilmour, R.4
Goodhew, C.F.5
Pettigrew, G.W.6
Ravi, N.7
Huynh, B.H.8
-
76
-
-
0024297203
-
The CO adduct of yeast cytochrome c oxidase: Mössbauer and photolysis studies
-
Wang, H., T. Sauke, P. Debrunner, and S. Chan. 1988. The CO adduct of yeast cytochrome c oxidase: Mössbauer and photolysis studies. J. Biol. Chem. 263:15260-15263.
-
(1988)
J. Biol. Chem
, vol.263
, pp. 15260-15263
-
-
Wang, H.1
Sauke, T.2
Debrunner, P.3
Chan, S.4
-
78
-
-
0016137117
-
Mössbauer studies of some complexes of the undecapeptide of cytochrome c
-
Baumgartner, C. P., M. Sellers, R. Nassif, and L. May. 1974. Mössbauer studies of some complexes of the undecapeptide of cytochrome c. Eur. J. Biochem. 46:625-629.
-
(1974)
Eur. J. Biochem
, vol.46
, pp. 625-629
-
-
Baumgartner, C.P.1
Sellers, M.2
Nassif, R.3
May, L.4
-
79
-
-
0014416474
-
Mössbauer studies of the iron atom in cytochrome c
-
Cooke, R., and P. Debrunner. 1968. Mössbauer studies of the iron atom in cytochrome c. J. Chem. Phys. 48:4532-4537.
-
(1968)
J. Chem. Phys
, vol.48
, pp. 4532-4537
-
-
Cooke, R.1
Debrunner, P.2
-
80
-
-
0014417334
-
Mössbauer spectroscopy of cytochrome c
-
Lang, G., D. Herbert, and T. Yonetani. 1968. Mössbauer spectroscopy of cytochrome c. J. Chem. Phys. 49:944-950.
-
(1968)
J. Chem. Phys
, vol.49
, pp. 944-950
-
-
Lang, G.1
Herbert, D.2
Yonetani, T.3
-
81
-
-
0032495769
-
An experimental and density functional theoretical investigation of iron-57 Mössbauer quadrupole splittings in organometallic and heme-model compounds: Applications to carbonmonoxy-heme protein structure
-
Havlin, R. H., N. Godbout, R. Salzmann, M. Wojdelski, W. Arnold, C. E. Schulz, and E. Oldfield. 1998. An experimental and density functional theoretical investigation of iron-57 Mössbauer quadrupole splittings in organometallic and heme-model compounds: applications to carbonmonoxy-heme protein structure. J. Am. Chem. Soc. 120:3144-3151.
-
(1998)
J. Am. Chem. Soc
, vol.120
, pp. 3144-3151
-
-
Havlin, R.H.1
Godbout, N.2
Salzmann, R.3
Wojdelski, M.4
Arnold, W.5
Schulz, C.E.6
Oldfield, E.7
-
83
-
-
0030004479
-
Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy
-
Melchers, B., E. Knapp, F. Parak, L. Cordone, A. Cupane, and M. Leone. 1996. Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy. Biophys. J. 70:2092-2099.
-
(1996)
Biophys. J
, vol.70
, pp. 2092-2099
-
-
Melchers, B.1
Knapp, E.2
Parak, F.3
Cordone, L.4
Cupane, A.5
Leone, M.6
-
84
-
-
0032961386
-
Heme-solvent coupling: A Mössbauer study of myoglobin in sucrose
-
Lichtenegger, H., W. Doster, T. Kleinert, A. Birk, B. Sepio, and G. Vogl. 1999. Heme-solvent coupling: a Mössbauer study of myoglobin in sucrose. Biophys. J. 76:414-422.
-
(1999)
Biophys. J
, vol.76
, pp. 414-422
-
-
Lichtenegger, H.1
Doster, W.2
Kleinert, T.3
Birk, A.4
Sepio, B.5
Vogl, G.6
-
85
-
-
26944437948
-
Reduced and oxidized cytochrome c4 exhibit differences in dynamics
-
Jørgensen, A. M., F. Parak, and H. E. M. Christensen. 2005. Reduced and oxidized cytochrome c4 exhibit differences in dynamics. Phys. Chem. Chem. Phys. 7:3472-3477.
-
(2005)
Phys. Chem. Chem. Phys
, vol.7
, pp. 3472-3477
-
-
Jørgensen, A.M.1
Parak, F.2
Christensen, H.E.M.3
-
87
-
-
27144482424
-
Single-atom test of all-atom empirical potentials: Fe in myoglobin
-
Rai, B., E. Prohofsky, and S. Durbin. 2005. Single-atom test of all-atom empirical potentials: Fe in myoglobin. J. Phys. Chem. B. 109:18983-18987.
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 18983-18987
-
-
Rai, B.1
Prohofsky, E.2
Durbin, S.3
-
88
-
-
0025333959
-
Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering
-
Cusack, S., and W. Doster. 1990. Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering. Biophys. J. 58:243-251.
-
(1990)
Biophys. J
, vol.58
, pp. 243-251
-
-
Cusack, S.1
Doster, W.2
-
89
-
-
0001108689
-
Dynamics of heme iron in crystals of metmyoglobin and deoxymyoglobin
-
Bauminger, E. R., S. G. Cohen, I. Nowik, S. Ofer, and J. Yariv. 1983. Dynamics of heme iron in crystals of metmyoglobin and deoxymyoglobin. Proc. Natl. Acad. Sci. USA. 80:736-740.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 736-740
-
-
Bauminger, E.R.1
Cohen, S.G.2
Nowik, I.3
Ofer, S.4
Yariv, J.5
-
90
-
-
0036941299
-
77Ser mutant and a partially unfolded HiPIP
-
77Ser mutant and a partially unfolded HiPIP. J. Biol. Inorg. Chem. 7:691-703.
-
(2002)
J. Biol. Inorg. Chem
, vol.7
, pp. 691-703
-
-
Dilg, A.W.E.1
Grantner, K.2
Iakovleva, O.3
Parak, F.G.4
Babini, E.5
Bertini, I.6
Capozzi, F.7
Luchinat, C.8
Meyer-Klaucke, W.9
-
91
-
-
34347390447
-
Protein dynamical transition in terahertz dielectric response
-
Markelz, A. G., J. R. Knab, J. Y. Chen, and Y. He. 2007. Protein dynamical transition in terahertz dielectric response. Chem. Phys. Lett. 442:413-417.
-
(2007)
Chem. Phys. Lett
, vol.442
, pp. 413-417
-
-
Markelz, A.G.1
Knab, J.R.2
Chen, J.Y.3
He, Y.4
-
92
-
-
0000133879
-
Glass transition in SPC/E water and in a protein solution: A molecular dynamics simulation study
-
Wong, C. F., C. Zheng, and J. A. McCammon. 1989. Glass transition in SPC/E water and in a protein solution: a molecular dynamics simulation study. Chem. Phys. Lett. 154:151-154.
-
(1989)
Chem. Phys. Lett
, vol.154
, pp. 151-154
-
-
Wong, C.F.1
Zheng, C.2
McCammon, J.A.3
-
93
-
-
0025008125
-
Temperature dependence of dynamics of hydrated myoglobin: Comparison of force field calculations with neutron scattering data
-
Loncharich, R. J., and B. R. Brooks. 1990. Temperature dependence of dynamics of hydrated myoglobin: comparison of force field calculations with neutron scattering data. J. Mol. Biol. 215:439-455.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 439-455
-
-
Loncharich, R.J.1
Brooks, B.R.2
-
94
-
-
0033988125
-
Solvent mobility and the protein "glass" transition
-
Vitkup, D., D. Ringe, G. A. Petsko, and M. Karplus. 2000. Solvent mobility and the protein "glass" transition. Nat. Struct. Biol. 7:34-38.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 34-38
-
-
Vitkup, D.1
Ringe, D.2
Petsko, G.A.3
Karplus, M.4
-
95
-
-
0032508112
-
Thermodynamics: Liquid landscape
-
Angell, A. 1998. Thermodynamics: liquid landscape. Nature. 393:521-524.
-
(1998)
Nature
, vol.393
, pp. 521-524
-
-
Angell, A.1
-
96
-
-
31144478410
-
Fe vibrational spectroscopy of myoglobin and cytochrome f
-
Adams, K., S. Tsoi, J. Yan, S. Durbin, A. Ramdas, W. Cramer, W. Sturhahn, E. Alp, and C. Schulz. 2006. Fe vibrational spectroscopy of myoglobin and cytochrome f. J. Phys. Chem. B. 110:530-536.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 530-536
-
-
Adams, K.1
Tsoi, S.2
Yan, J.3
Durbin, S.4
Ramdas, A.5
Cramer, W.6
Sturhahn, W.7
Alp, E.8
Schulz, C.9
-
97
-
-
0019888571
-
Conformation change of cytochrome c: II. Ferrocytochrome c refinement at 1.5 Å resolution
-
Takano, T., and R. E. Dickerson. 1981. Conformation change of cytochrome c: II. Ferrocytochrome c refinement at 1.5 Å resolution. J. Mol. Biol. 153:95-115.
-
(1981)
J. Mol. Biol
, vol.153
, pp. 95-115
-
-
Takano, T.1
Dickerson, R.E.2
-
98
-
-
0019888623
-
Conformation change of cytochrome c: I. Ferricytochrome c refinement at 1.8 Å and comparison with the ferrocytochrome structure
-
Takano, T., and R. E. Dickerson. 1981. Conformation change of cytochrome c: I. Ferricytochrome c refinement at 1.8 Å and comparison with the ferrocytochrome structure. J. Mol. Biol. 153:79-94.
-
(1981)
J. Mol. Biol
, vol.153
, pp. 79-94
-
-
Takano, T.1
Dickerson, R.E.2
-
99
-
-
0029645118
-
The low ionic strength crystal structure of horse cytochrome c at 2.1 Å resolution and comparison with its high ionic strength counterpart
-
Sanishvili, R., K. Volz, E. Westbrook, and E. Margoliash. 1995. The low ionic strength crystal structure of horse cytochrome c at 2.1 Å resolution and comparison with its high ionic strength counterpart. Structure. 3:707-716.
-
(1995)
Structure
, vol.3
, pp. 707-716
-
-
Sanishvili, R.1
Volz, K.2
Westbrook, E.3
Margoliash, E.4
-
100
-
-
0025234717
-
Redox-dependent structure change and hyperfine nuclear magnetic resonance shifts in cytochrome c
-
Feng, Y., H. Roder, and S. W. Englander. 1990. Redox-dependent structure change and hyperfine nuclear magnetic resonance shifts in cytochrome c. Biochemistry. 29:3494-3504.
-
(1990)
Biochemistry
, vol.29
, pp. 3494-3504
-
-
Feng, Y.1
Roder, H.2
Englander, S.W.3
-
101
-
-
0025727988
-
Comparison of reduced and oxidized yeast iso-1-cytochrome c using proton paramagnetic shifts
-
Gao, Y., J. Boyd, G. J. Pielak, and R. J. P. Williams. 1991. Comparison of reduced and oxidized yeast iso-1-cytochrome c using proton paramagnetic shifts. Biochemistry. 30:1928-1934.
-
(1991)
Biochemistry
, vol.30
, pp. 1928-1934
-
-
Gao, Y.1
Boyd, J.2
Pielak, G.J.3
Williams, R.J.P.4
-
103
-
-
0023818581
-
Differences in the solution structures of oxidized and reduced cytochrome c measured by small-angle x-ray scattering
-
Trewhella, J., V. A. P. Carlson, E. H. Curtis, and D. B. Heidorn. 1988. Differences in the solution structures of oxidized and reduced cytochrome c measured by small-angle x-ray scattering. Biochemistry. 27:1121-1125.
-
(1988)
Biochemistry
, vol.27
, pp. 1121-1125
-
-
Trewhella, J.1
Carlson, V.A.P.2
Curtis, E.H.3
Heidorn, D.B.4
-
104
-
-
0037188386
-
Protein conformations explored by difference high-angle solution x-ray scattering: Oxidation state and temperature dependent changes in cytochrome c
-
Tiede, D. M., R. Zhang, and S. Seifert. 2002. Protein conformations explored by difference high-angle solution x-ray scattering: oxidation state and temperature dependent changes in cytochrome c. Biochemistry. 41:6605-6614.
-
(2002)
Biochemistry
, vol.41
, pp. 6605-6614
-
-
Tiede, D.M.1
Zhang, R.2
Seifert, S.3
-
105
-
-
46149138166
-
Low frequency dynamics of proteins studied by neutron time-of-flight spectroscopy
-
Cusack, S., J. Smith, J. Finney, M. Karplus, and J. Trewhella. 1986. Low frequency dynamics of proteins studied by neutron time-of-flight spectroscopy. Physica B (Amsterdam). 136:256-259.
-
(1986)
Physica B (Amsterdam)
, vol.136
, pp. 256-259
-
-
Cusack, S.1
Smith, J.2
Finney, J.3
Karplus, M.4
Trewhella, J.5
-
106
-
-
33745393162
-
Redox-coupled dynamics and folding in cytochrome c
-
Sagle, L. B., J. Zimmermann, S. Matsuda, P. E. Dawson, and F. E. Romesberg. 2006. Redox-coupled dynamics and folding in cytochrome c. J. Am. Chem. Soc. 128:7909-7915.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 7909-7915
-
-
Sagle, L.B.1
Zimmermann, J.2
Matsuda, S.3
Dawson, P.E.4
Romesberg, F.E.5
-
107
-
-
8844264574
-
-
Ward, N. L., O. Larsen, J. Sakwa, L. Bruseth, H. M. Khouri, A. S. Durkin, G. Dimitrov, L. Jiang, D. Scanlan, K. H. Kang, M. R. Lewis, K. E. Nelson, B. A. Methé, M. Wu, J. F. Heidelberg, I. T. Paulsen, D. E. Fouts, J. Ravel, H. Tettelin, Q. Ren, T. D. Read, R. T. DeBoy, R. Seshadri, S. L. Salzberg, H. B. Jensen, N. K. Birkeland, W. C. Nelson, R. J. Dodson, S. H. Grindhaug, I. E. Holt, I. Eidhammer, I. Jonasen, S. Vanaken, T. R. Utterback, T. V. Feldblyum, C. M. Fraser, J. R. Lillehaug, and J. Eisen. 2004. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol. 2:1616-1628.
-
Ward, N. L., O. Larsen, J. Sakwa, L. Bruseth, H. M. Khouri, A. S. Durkin, G. Dimitrov, L. Jiang, D. Scanlan, K. H. Kang, M. R. Lewis, K. E. Nelson, B. A. Methé, M. Wu, J. F. Heidelberg, I. T. Paulsen, D. E. Fouts, J. Ravel, H. Tettelin, Q. Ren, T. D. Read, R. T. DeBoy, R. Seshadri, S. L. Salzberg, H. B. Jensen, N. K. Birkeland, W. C. Nelson, R. J. Dodson, S. H. Grindhaug, I. E. Holt, I. Eidhammer, I. Jonasen, S. Vanaken, T. R. Utterback, T. V. Feldblyum, C. M. Fraser, J. R. Lillehaug, and J. Eisen. 2004. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol. 2:1616-1628.
-
-
-
-
108
-
-
0014010367
-
The amino acid sequence of bovine heart cytochrome c
-
Nakashima, T., H. Higa, H. Matsubara, A. M. Benson, and K. T. Yasunobu. 1966. The amino acid sequence of bovine heart cytochrome c. J. Biol. Chem. 241:1166-1177.
-
(1966)
J. Biol. Chem
, vol.241
, pp. 1166-1177
-
-
Nakashima, T.1
Higa, H.2
Matsubara, H.3
Benson, A.M.4
Yasunobu, K.T.5
-
110
-
-
0029004611
-
The volume of atoms on the protein surface: Calculated from simulation, using Voronoi polyhedra
-
Gerstein, M., J. Tsai, and M. Levitt. 1995. The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra. J. Mol. Biol. 249:955-966.
-
(1995)
J. Mol. Biol
, vol.249
, pp. 955-966
-
-
Gerstein, M.1
Tsai, J.2
Levitt, M.3
-
111
-
-
0033516705
-
The packing density in proteins: Standard radii and volumes
-
Tsai, J., R. Taylor, C. Chothia, and M. Gerstein. 1999. The packing density in proteins: standard radii and volumes. J. Mol. Biol. 190:253-266.
-
(1999)
J. Mol. Biol
, vol.190
, pp. 253-266
-
-
Tsai, J.1
Taylor, R.2
Chothia, C.3
Gerstein, M.4
-
113
-
-
0033932840
-
Protein compressibility, dynamics, and pressure
-
Kharakoz, D. P. 2000. Protein compressibility, dynamics, and pressure. Biophys. J. 79:511-525.
-
(2000)
Biophys. J
, vol.79
, pp. 511-525
-
-
Kharakoz, D.P.1
-
114
-
-
0020094523
-
Increase in apparent compressibility of cytochrome c upon oxidation
-
Eden, D., J. B. Matthew, J. J. Rosa, and F. M. Richards. 1982. Increase in apparent compressibility of cytochrome c upon oxidation. Proc. Natl. Acad. Sci. USA. 79:815-819.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 815-819
-
-
Eden, D.1
Matthew, J.B.2
Rosa, J.J.3
Richards, F.M.4
-
115
-
-
0022687553
-
Change in the compressibility of cytochrome c globule upon redox transition
-
Kharakoz, D. P., and A. G. Mkhitaryan. 1986. Change in the compressibility of cytochrome c globule upon redox transition. Mol. Biol. (Mosk.). 20:396-401.
-
(1986)
Mol. Biol. (Mosk.)
, vol.20
, pp. 396-401
-
-
Kharakoz, D.P.1
Mkhitaryan, A.G.2
|