Complete characterization of killer Ig-like receptor (KIR) haplotypes in Mauritian cynomolgus macaques: Novel insights into nonhuman primate KIR gene content and organization

Journal of Immunology

Volumn 181, Issue 9, 2008, Pages 6301-6308

  Bimber, Benjamin N ^a   Moreland, Anna J ^a   Wiseman, Roger W ^b   Hughes, Austin L ^c   O'Connor, David H ^a,b  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

^b UNIVERSITY OF WISCONSIN   (United States)

^c UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR; KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR 3DL1; MICROSATELLITE DNA;

ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; MACACA; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; POPULATION; PRIMATE; PRIORITY JOURNAL; RHESUS MONKEY; ANIMAL; COMPARATIVE STUDY; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GENOME; IMMUNOLOGY; MOLECULAR GENETICS;

ANIMALS; GENETIC MARKERS; GENETIC VARIATION; GENOME; HAPLOTYPES; MACACA FASCICULARIS; MACACA MULATTA; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; RECEPTORS, KIR;

EID: 58749089115     PISSN: 00221767     EISSN: 15506606     Source Type: Journal    
DOI: 10.4049/jimmunol.181.9.6301     Document Type: Article

References (52)

1. Lanier, L. L. 2008. Evolutionary struggles between NK cells and viruses. Nat. Rev. Immunol. 8: 259-268.
2. + T cells in human immunodeficiency virus type 1 infection. J. Virol. 82: 9668-9677.
3. Gardiner, C. M. 2008. Killer cell immunoglobulin-like receptors on NK cells: the how, where and why. Int. J. Immunogenet. 35: 1-8.
4. Yawata, M., N. Yawata, M. Draghi, F. Partheniou, A. M. Little, and P. Parham. 2008. MHC class I-specific inhibitory receptors and their ligands structure diverse human NK-cell repertoires toward a balance of missing self-response. Blood 112: 2369-2380.
5. Parham, P. 2006. Taking license with natural killer cell maturation and repertoire development. Immunol. Rev. 214: 155-160. (Pubitemid 44707909)
6. Kim, S., J. Poursine-Laurent, S. Truscott, L. Lybarger, Y. Song, L. Yang, A. French, J. Sunwoo, S. Lemieux, T. Hansen, and W. Yokoyama. 2005. Licensing of natural killer cells by host major histocompatibility complex class I molecules. Nature 436: 709-713. (Pubitemid 41117274)
7. Moretta, L., and A. Moretta. 2004. Killer immunoglobulin-like receptors. Curr. Opin. Immunol. 16: 626-633.
8. Long, E., and S. Rajagopalan. 2000. HLA class I recognition by killer cell Ig-like receptors. Semin. Immunol. 12: 101-108. (Pubitemid 30199274)
9. Vilches, C., and P. Parham. 2002. KIR: diverse, rapidly evolving receptors of innate and adaptive immunity. Annu. Rev. Immunol. 20: 217-251. (Pubitemid 34293425)
10. Parham, P. 2004. Killer cell immunoglobulin-like receptor diversity: balancing signals in the natural killer cell response. Immunol. Lett. 92: 11-13. (Pubitemid 38470044)
11. Bashirova, A., M. Martin, D. McVicar, and M. Carrington. 2006. The killer immunoglobulin-like receptor gene cluster: tuning the genome for defense. Annu. Rev. Genomics Hum. Genet. 7: 277-300. (Pubitemid 44627931)
12. Ahlenstiel, G., M. P. Martin, X. Gao, M. Carrington, and B. Rehermann. 2008. Distinct KIR/HLA compound genotypes affect the kinetics of human antiviral natural killer cell responses. J. Clin. Invest. 118: 1017-1026.
13. Yawata, M., N. Yawata, M. Draghi, A. Little, F. Partheniou, and P. Parham. 2006. Roles for HLA and KIR polymorphisms in natural killer cell repertoire selection and modulation of effector function. J. Exp. Med. 203: 633-645.
14. Carrington, M., and M. Martin. 2006. The impact of variation at the KIR gene cluster on human disease. Curr. Top. Microbiol. Immunol. 298: 225-257.
15. Wilson, M., M. Torkar, A. Haude, S. Milne, T. Jones, D. Sheer, S. Beck, and J. Trowsdale. 2000. Plasticity in the organization and sequences of human KIR/ILT gene families. Proc. Natl. Acad. Sci. USA 97: 4778-4783. (Pubitemid 30238634)
16. Hsu, K., S. Chida, D. Geraghty, and B. Dupont. 2002. The killer cell immunoglobulin-like receptor (KIR) genomic region: gene-order, haplotypes and allelic polymorphism. Immunol. Rev. 190: 40-52. (Pubitemid 36071925)
17. Witt, C., C. Dewing, D. Sayer, M. Uhrberg, P. Parham, and F. Christiansen. 1999. Population frequencies and putative haplotypes of the killer cell immunoglobulin-like receptor sequences and evidence for recombination. Transplantation 68: 1784-1789. (Pubitemid 30004812)
18. Anfossi, N., P. André, S. Guia, C. Falk, S. Roetynck, C. Stewart, V. Breso, C. Frassati, D. Reviron, D. Middleton, et al. 2006. Human NK cell education by inhibitory receptors for MHC class I. Immunity 25: 331-342. (Pubitemid 44224147)
19. Shilling, H. G., N. Young, L. A. Guethlein, N. W. Cheng, C. M. Gardiner, D. Tyan, and P. Parham. 2002. Genetic control of human NK cell repertoire. J. Immunol. 169: 239-247. (Pubitemid 34686141)
20. O'Connor, G., K. Guinan, R. Cunningham, D. Middleton, P. Parham, and C. Gardiner. 2007. Functional polymorphism of the KIR3DL1/S1 receptor on human NK cells. J. Immunol. 178: 235-241. (Pubitemid 46033606)
21. Yu, J., G. Heller, J. Chewning, S. Kim, W. M. Yokoyama, and K. C. Hsu. 2007. Hierarchy of the human natural killer cell response is determined by class and quantity of inhibitory receptors for self-HLA-B and HLA-C ligands. J. Immunol. 179: 5977-5989.
22. Uhrberg, M. 2005. Shaping the human NK cell repertoire: an epigenetic glance at KIR gene regulation. Mol. Immunol. 42: 471-475. (Pubitemid 39655956)
23. Khakoo, S., C. Thio, M. Martin, C. Brooks, X. Gao, J. Astemborski, J. Cheng, J. Goedert, D. Vlahov, M. Hilgartner, et al. 2004. HLA and NK cell inhibitory receptor genes in resolving hepatitis C virus infection. Science 305: 872-874. (Pubitemid 39038423)
24. Carrington, M., S. Wang, M. Martin, X. Gao, M. Schiffman, J. Cheng, R. Herrero, A. Rodriguez, R. Kurman, R. Mortel, et al. 2005. Hierarchy of resistance to cervical neoplasia mediated by combinations of killer immunoglobulin-like receptor and human leukocyte antigen loci. J. Exp. Med. 201: 1069-1075. (Pubitemid 40524675)
25. Martin, M., Y. Qi, X. Gao, E. Yamada, J. Martin, F. Pereyra, S. Colombo, E. Brown, W. Shupert, J. Phair, et al. 2007. Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1. Nat. Genet. 39: 733-740. (Pubitemid 46848586)
26. Martin, M., X. Gao, J. Lee, G. Nelson, R. Detels, J. Goedert, S. Buchbinder, K. Hoots, D. Vlahov, J. Trowsdale, et al. 2002. Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS. Nat. Genet. 31: 429-434. (Pubitemid 35154456)
27. Hansen, D., M. D'Ombrain, and L. Schofield. 2007. The role of leukocytes bearing natural killer complex receptors and killer immunoglobulin-like receptors in the immunology of malaria. Curr. Opin. Immunol. 19: 416-423. (Pubitemid 47299197)
28. Kim, S., J. B. Sunwoo, L. Yang, T. Choi, Y. J. Song, A. R. French, A. Vlahiotis, J. F. Piccirillo, M. Cella, M. Colonna, et al. 2008. HLA alleles determine differences in human natural killer cell responsiveness and potency. Proc. Natl. Acad. Sci. USA 105: 3053-3058. (Pubitemid 351723666)
29. Goulder, P., C. Brander, Y. Tang, C. Tremblay, R. Colbert, M. Addo, E. Rosenberg, T. Nguyen, R. Allen, A. Trocha, et al. 2001. Evolution and transmission of stable CTL escape mutations in HIV infection. Nature 412: 334-338. (Pubitemid 32694384)
30. + T cells is unrelated to epitope specificity and is abrogated by viral escape. J. Virol. 81: 2624-2634.
31. Bontrop, R. E., and D. I. Watkins. 2005. MHC polymorphism: AIDS susceptibility in non-human primates. Trends Immunol. 26: 227-233. (Pubitemid 41556861)
32. Loffredo, J., J. Maxwell, Y. Qi, C. Glidden, G. Borchardt, T. Soma, A. Bean, D. Beal, N. Wilson, W. Rehrauer, et al. 2007. Mamu-B*08-positive macaques control simian immunodeficiency virus replication. J. Virol. 81: 8827-8832. (Pubitemid 47242856)
33. Friedrich, T., E. Dodds, L. Yant, L. Vojnov, R. Rudersdorf, C. Cullen, D. Evans, R. Desrosiers, B. Mothé, J. Sidney, et al. 2004. Reversion of CTL escape-variant immunodeficiency viruses in vivo. Nat. Med. 10: 275-281. (Pubitemid 38667618)
34. Wojcechowskyj, J., L. Yant, R. Wiseman, S. O'Connor, and D. O'Connor. 2007. Control of simian immunodeficiency virus SIVmac239 is not predicted by inheritance of Mamu-B*17-containing haplotypes. J. Virol. 81: 406-410. (Pubitemid 44975179)
35. Sambrook, J., A. Bashirova, S. Palmer, S. Sims, J. Trowsdale, L. Abi-Rached, P. Parham, M. Carrington, and S. Beck. 2005. Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates. Genome Res. 15: 25-35.
36. Hershberger, K., R. Shyam, A. Miura, and N. Letvin. 2001. Diversity of the killer cell Ig-like receptors of rhesus monkeys. J. Immunol. 166: 4380-4390. (Pubitemid 32233720)
37. Grendell, R. L., A. L. Hughes, and T. G. Golos. 2001. Cloning of rhesus monkey killer-cell Ig-like receptors (KIRs) from early pregnancy decidua. Tissue Antigen 58: 329-334.
38. Wiseman, R., J. Wojcechowskyj, J. Greene, A. Blasky, T. Gopon, T. Soma, T. Friedrich, S. O'Connor, and D. O'Connor. 2007. Simian immunodeficiency virus SIVmac239 infection of major histocompatibility complex-identical cynomolgus macaques from Mauritius. J. Virol. 81: 349-361. (Pubitemid 44975174)
39. Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16: 276-277.
40. Untergasser, A., H. Nijveen, X. Rao, T. Bisseling, R. Geurts, and J. A. Leunissen. 2007. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res. 35: W71-W74.
41. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
42. Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8: 275-282.
43. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
44. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
45. Sussman, R. W., and I. Tattersall. 1986. Distribution, abundance, and putative. Folia Primatol. 46: 28-43.
46. Lawler, S. H., R. W. Sussman, and L. L. Taylor. 1995. Mitochondrial DNA of the Mauritian macaques (Macaca fascicularis): an example of the founder effect. Am. J. Phys. Anthropol. 96: 133-141.
47. O'Connor, S., A. Blasky, C. Pendley, E. Becker, R. Wiseman, J. Karl, A. Hughes, and D. O'Connor. 2007. Comprehensive characterization of MHC class II haplotypes in Mauritian cynomolgus macaques. Immunogenetics 59: 449-462. (Pubitemid 46684717)
48. Florese, R. H., R. W. Wiseman, D. Venzon, J. A. Karl, T. Demberg, K. Larsen, L. Flanary, V. S. Kalyanaraman, R. Pal, F. Titti, et al. 2008. Comparative study of Tat vaccine regimens in Mauritian cynomolgus and Indian rhesus macaques: influence of Mauritian MHC haplotypes on susceptibility/ resistance to SHIV(89.6P) infection. Vaccine 26: 3312-3321.
49. Single, R. M., M. P. Martin, X. Gao, D. Meyer, M. Yeager, J. R. Kidd, K. K. Kidd, and M. Carrington. 2007. Global diversity and evidence for coevolution of KIR and HLA. Nat. Genet. 39: 1114-1119.
50. Robinson, J., and S. G. Marsh. 2007. IPD: the Immuno Polymorphism Database. Methods Mol. Biol. 409: 61-74.
51. Otting, N., A. J. de Vos-Rouweler, C. M. Heijmans, N. G. de Groot, G. G. Doxiadis, and R. E. Bontrop. 2007. MHC class I A region diversity and polymorphism in macaque species. Immunogenetics 59: 367-375. (Pubitemid 46537502)
52. Otting, N., C. M. Heijmans, R. C. Noort, N. G. de Groot, G. G. Doxiadis, J. J. van Rood, D. I. Watkins, and R. E. Bontrop. 2005. Unparalleled complexity of the MHC class I region in rhesus macaques. Proc. Natl. Acad. Sci. USA 102: 1626-1631. (Pubitemid 40209218)