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Volumn 22, Issue 4, 2007, Pages 399-404

Presence of linA-Homologous DNA Sequences in Different Types of Soil and Their Sequence Diversity

Author keywords

linA; PCR; soil DNA; Sphingobium japonicum; HCH

Indexed keywords


EID: 58549109851     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.22.399     Document Type: Article
Times cited : (5)

References (28)
  • 1
    • 23944446592 scopus 로고    scopus 로고
    • 16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains
    • Böltner, D., S. Moreno-Morillas, and J. L. Ramos. 2005. 16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains. Environ. Micro-biol. 7:1329–1338.
    • (2005) Environ. Micro-biol. , vol.7 , pp. 1329-1338
    • Böltner, D.1    Moreno-Morillas, S.2    Ramos, J.L.3
  • 2
    • 33645222793 scopus 로고    scopus 로고
    • Plasmid-encoded γ-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp1)
    • Cérémonie, H., H. Boubakri, P. Mavingui, P. Simonet, and T.M. Vogel. 2006. Plasmid-encoded γ-hexachlorocyclohexane degradation genes and insertion sequences in Sphingobium francense (ex-Sphingomonas paucimobilis Sp1). FEMS Microbiol. Lett. 257:243–252.
    • (2006) FEMS Microbiol. Lett. , vol.257 , pp. 243-252
    • Cérémonie, H.1    Boubakri, H.2    Mavingui, P.3    Simonet, P.4    Vogel, T.M.5
  • 3
    • 1842454814 scopus 로고    scopus 로고
    • Organization of lin genes and IS6100 among different strains of hexachlorocyclohex-ane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer
    • Dogra, C., V. Raina, R. Pal, M. Suar, S. Lal, K. H. Gartemann, C. Holliger, J.R. van der Meer, and R. Lal. 2004. Organization of lin genes and IS6100 among different strains of hexachlorocyclohex-ane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer. J. Bacteriol. 186:2225–2235.
    • (2004) J. Bacteriol. , vol.186 , pp. 2225-2235
    • Dogra, C.1    Raina, V.2    Pal, R.3    Suar, M.4    Lal, S.5    Gartemann, K.H.6    Holliger, C.7    van der Meer, J.R.8    Lal, R.9
  • 4
    • 0000396578 scopus 로고
    • Dehydrochlorination of γ-hexachlorocyclohexane (γ-BHC) by γ-BHC-assimilating Pseudomonas paucimobilis
    • Imai, R., Y. Nagata, K. Senoo, H. Wada, M. Fukuda, and K. Yano. 1989. Dehydrochlorination of γ-hexachlorocyclohexane (γ-BHC) by γ-BHC-assimilating Pseudomonas paucimobilis. Agric. Biol. Chem. 53:2015–2017.
    • (1989) Agric. Biol. Chem. , vol.53 , pp. 2015-2017
    • Imai, R.1    Nagata, Y.2    Senoo, K.3    Wada, H.4    Fukuda, M.5    Yano, K.6
  • 5
    • 0025786069 scopus 로고
    • Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from γ-hexachlorocyclohexane
    • Imai, R., Y. Nagata, M. Fukuda, M. Takagi, and K. Yano. 1991. Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from γ-hexachlorocyclohexane. J. Bacteriol. 173:6811–6819.
    • (1991) J. Bacteriol. , vol.173 , pp. 6811-6819
    • Imai, R.1    Nagata, Y.2    Fukuda, M.3    Takagi, M.4    Yano, K.5
  • 6
    • 0031712774 scopus 로고    scopus 로고
    • Degradation of alpha, beta, gamma and delta-hexachlorocyclohexanes by Sphingomonas paucimobilis
    • Johri, A.K., M. Dua, D. Tuteja, R. Saxena, D.M. Saxena, and R. Lal. 1998. Degradation of alpha, beta, gamma and delta-hexachlorocyclohexanes by Sphingomonas paucimobilis. Biotechnol. Lett. 20:885–887.
    • (1998) Biotechnol. Lett. , vol.20 , pp. 885-887
    • Johri, A.K.1    Dua, M.2    Tuteja, D.3    Saxena, R.4    Saxena, D.M.5    Lal, R.6
  • 7
    • 0036952382 scopus 로고    scopus 로고
    • Cloning and characterization of lin genes responsible for the degradation of hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90
    • Kumari, R., S. Subudhi, M. Suar, G. Dhingra, V. Raina, C. Dorga, S. Lal, J.R. van der Meer, C. Holliger, and R. Lal. 2002. Cloning and characterization of lin genes responsible for the degradation of hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90. Appl. Environ. Microbiol. 68:6021- 6028.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 6021-6028
    • Kumari, R.1    Subudhi, S.2    Suar, M.3    Dhingra, G.4    Raina, V.5    Dorga, C.6    Lal, S.7    van der Meer, J.R.8    Holliger, C.9    Lal, R.10
  • 8
    • 33644545035 scopus 로고    scopus 로고
    • Diversity, distribution and divergence of lin genes in hexachloro-cyclohexane-degrading sphingomonads
    • Lal, R., C. Dogra, S. Malhotra, P. Sharma, and R. Pal. 2006. Diversity, distribution and divergence of lin genes in hexachloro-cyclohexane-degrading sphingomonads. Trends Biotechnol. 24:121–130.
    • (2006) Trends Biotechnol. , vol.24 , pp. 121-130
    • Lal, R.1    Dogra, C.2    Malhotra, S.3    Sharma, P.4    Pal, R.5
  • 9
    • 0036211214 scopus 로고    scopus 로고
    • Cloning and characterization of linR, involved in regulation of the downstream pathway for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26
    • Miyauchi, K., H. S. Lee, M. Fukuda, M. Takagi, and Y. Nagata. 2002. Cloning and characterization of linR, involved in regulation of the downstream pathway for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. Appl. Environ. Microbiol. 68:1803–1807.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1803-1807
    • Miyauchi, K.1    Lee, H.S.2    Fukuda, M.3    Takagi, M.4    Nagata, Y.5
  • 10
    • 0031895255 scopus 로고    scopus 로고
    • Clonig and sequencing of a 2,5-dichlorohydroquinone reductive dehydrogenase gene whose product is involved in degradation of γ-hexachlorocyclohexane by Sphingomonas paucimobilis
    • Miyauchi, K., S. K. Suh, Y. Nagata, and M. Takagi. 1998. Clonig and sequencing of a 2,5-dichlorohydroquinone reductive dehydrogenase gene whose product is involved in degradation of γ-hexachlorocyclohexane by Sphingomonas paucimobilis. J. Bacte-riol. 180:1354–1359.
    • (1998) J. Bacte-riol. , vol.180 , pp. 1354-1359
    • Miyauchi, K.1    Suh, S.K.2    Nagata, Y.3    Takagi, M.4
  • 11
    • 0032704711 scopus 로고    scopus 로고
    • Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of γ-hexachlorocyclo-hexane in Sphingomonas paucimobilis
    • Miyauchi, K., Y. Adachi, Y. Nagata, and M. Takagi. 1999. Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of γ-hexachlorocyclo-hexane in Sphingomonas paucimobilis. J. Bacteriol. 181:6712- 6719.
    • (1999) J. Bacteriol. , vol.181 , pp. 6712-6719
    • Miyauchi, K.1    Adachi, Y.2    Nagata, Y.3    Takagi, M.4
  • 12
    • 33644960166 scopus 로고    scopus 로고
    • Distribution and phylogeny of hexachlorocyclo-hexane degrading bacteria in soils from Spain
    • Mohn, W.W., B. Mertens, J.D. Neufeld, W. Verstraete, and V. de Lorenzo. 2006. Distribution and phylogeny of hexachlorocyclo-hexane degrading bacteria in soils from Spain. Environ. Micro-biol. 8:60–68.
    • (2006) Environ. Micro-biol. , vol.8 , pp. 60-68
    • Mohn, W.W.1    Mertens, B.2    Neufeld, J.D.3    Verstraete, W.4    de Lorenzo, V.5
  • 13
    • 0032835982 scopus 로고    scopus 로고
    • Two different types of dehalogenases, LinA and LinB, involved in γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26 are localized in the periplasmic space without molecular processing
    • Nagata, Y., A. Futamura, K. Miyauchi, and M. Talagi. 2001. Two different types of dehalogenases, LinA and LinB, involved in γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26 are localized in the periplasmic space without molecular processing. J. Bacteriol. 181:5409–5413.
    • (2001) J. Bacteriol. , vol.181 , pp. 5409-5413
    • Nagata, Y.1    Futamura, A.2    Miyauchi, K.3    Talagi, M.4
  • 14
    • 0030853537 scopus 로고    scopus 로고
    • Purification and characterization of a haloalkane dehalogenase of a new substrate class from a γ-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26
    • Nagata, Y., K. Miyauchi, J. Damborský, K. Manova, A. Ansor-gova, and M. Takagi. 1997. Purification and characterization of a haloalkane dehalogenase of a new substrate class from a γ-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26. Appl. Environ. Microbiol. 63:3707–3710.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3707-3710
    • Nagata, Y.1    Miyauchi, K.2    Damborský, J.3    Manova, K.4    Ansor-gova, A.5    Takagi, M.6
  • 15
    • 0033387054 scopus 로고    scopus 로고
    • Complete analysis of genes and enzymes for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26
    • Nagata, Y., K. Miyauchi, and M. Takagi. 1999. Complete analysis of genes and enzymes for γ-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. J. Ind. Microbiol. Biotechnol. 23:380–390.
    • (1999) J. Ind. Microbiol. Biotechnol. , vol.23 , pp. 380-390
    • Nagata, Y.1    Miyauchi, K.2    Takagi, M.3
  • 17
    • 33645074406 scopus 로고    scopus 로고
    • Distribution of γ-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26
    • Nagata, Y., M. Kamakura, R. Endo, R. Miyazaki, Y. Ohtsubo, and M. Tsuda. 2006. Distribution of γ-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26. FEMS Microbiol. Lett. 256:112–118.
    • (2006) FEMS Microbiol. Lett. , vol.256 , pp. 112-118
    • Nagata, Y.1    Kamakura, M.2    Endo, R.3    Miyazaki, R.4    Ohtsubo, Y.5    Tsuda, M.6
  • 18
    • 0027598830 scopus 로고
    • Isolation and characterization of Tn5-induced mutants of Pseudomonas paucimobilis UT26 defective in γ-hexachlorocyclohexane dehydrochlorinase (LinA)
    • Nagata, Y., R. Imai, A. Sakai, M. Fukuda, K. Yano, and M. Takagi. 1993. Isolation and characterization of Tn5-induced mutants of Pseudomonas paucimobilis UT26 defective in γ-hexachlorocyclohexane dehydrochlorinase (LinA). Biosci. Biotech. Biochem. 57:703–709.
    • (1993) Biosci. Biotech. Biochem. , vol.57 , pp. 703-709
    • Nagata, Y.1    Imai, R.2    Sakai, A.3    Fukuda, M.4    Yano, K.5    Takagi, M.6
  • 19
    • 0028276471 scopus 로고
    • Cloning and sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis
    • Nagata, Y., R. Ohtomo, K. Miyauchi, M. Fukuda, K. Yano, and M. Takagi. 1994. Cloning and sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis. J. Bacteriol. 176:3117–3125.
    • (1994) J. Bacteriol. , vol.176 , pp. 3117-3125
    • Nagata, Y.1    Ohtomo, R.2    Miyauchi, K.3    Fukuda, M.4    Yano, K.5    Takagi, M.6
  • 20
    • 84871380178 scopus 로고
    • Purification and characterization of γ-hexachlorocyclohexane (γ-HCH) dehydrochlorinase (LinA) from Pseudomonas paucimobilis
    • Nagata, Y., T. Hatta, R. Imai, K. Kimbara, M. Fukuda, K. Yano, and M. Takagi. 1993. Purification and characterization of γ-hexachlorocyclohexane (γ-HCH) dehydrochlorinase (LinA) from Pseudomonas paucimobilis. Biosci. Biotech. Biochem. 57:1582- 1583.
    • (1993) Biosci. Biotech. Biochem. , vol.57 , pp. 1582-1583
    • Nagata, Y.1    Hatta, T.2    Imai, R.3    Kimbara, K.4    Fukuda, M.5    Yano, K.6    Takagi, M.7
  • 21
    • 0027436421 scopus 로고
    • Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis
    • Nagata, Y., T. Nariya, R. Ohtomo, M. Fukuda, K. Yano, and M. Takagi. 1993. Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of γ-hexachlorocyclohexane in Pseudomonas paucimobilis. J. Bacteriol. 175:6403–6410.
    • (1993) J. Bacteriol. , vol.175 , pp. 6403-6410
    • Nagata, Y.1    Nariya, T.2    Ohtomo, R.3    Fukuda, M.4    Yano, K.5    Takagi, M.6
  • 22
    • 26244458524 scopus 로고    scopus 로고
    • Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium fran-cense sp. nov., and reclassification of [Sphingomonas] chung-bukensis as Sphingobium chungbukense comb. nov
    • Pal, R., S. Bala, M. Dadhwal, M. Kumar, G. Dhingra, O. Prakash, S.R. Prabagaran, S. Shivaji, J. Cullum, C. Holliger, and R. Lal. 2005. Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+, having similar lin genes, represent three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium fran-cense sp. nov., and reclassification of [Sphingomonas] chung-bukensis as Sphingobium chungbukense comb. nov. Int. J. Syst. Evol. Microbiol. 55:1965–1972.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1965-1972
    • Pal, R.1    Bala, S.2    Dadhwal, M.3    Kumar, M.4    Dhingra, G.5    Prakash, O.6    Prabagaran, S.R.7    Shivaji, S.8    Cullum, J.9    Holliger, C.10    Lal, R.11
  • 23
    • 0025133035 scopus 로고
    • Degradation of alpha-, beta-, and gamma-hexachlorocyclo-hexane by a soil bacterium under aerobic conditions
    • Sahu, H.K., K.K. Patnaik, M. Sharmila, and N. Sethunathan. 1990. Degradation of alpha-, beta-, and gamma-hexachlorocyclo-hexane by a soil bacterium under aerobic conditions. Appl. Environ. Microbiol. 56:3620–3622.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 3620-3622
    • Sahu, H.K.1    Patnaik, K.K.2    Sharmila, M.3    Sethunathan, N.4
  • 24
    • 0002174737 scopus 로고
    • Isolation and identification of an aerobic γ-HCH-decomposing bacterium from soil
    • Senoo, K., and H. Wada. 1989. Isolation and identification of an aerobic γ-HCH-decomposing bacterium from soil. Soil Sci. Plant Nutr. 35:79–87.
    • (1989) Soil Sci. Plant Nutr. , vol.35 , pp. 79-87
    • Senoo, K.1    Wada, H.2
  • 25
    • 0026590899 scopus 로고
    • Differences in dynamics between indigenous and inoculated Sph-ingomonas paucimobilis strain SS86 in soils
    • Senoo, K., M. Nishiyama, H. Wada, and S. Matsumoto. 1992. Differences in dynamics between indigenous and inoculated Sph-ingomonas paucimobilis strain SS86 in soils. FEMS Microbiol. Ecol. 86:311–320.
    • (1992) FEMS Microbiol. Ecol. , vol.86 , pp. 311-320
    • Senoo, K.1    Nishiyama, M.2    Wada, H.3    Matsumoto, S.4
  • 28
    • 0002293909 scopus 로고
    • Rapid degradation of γ-HCH in upland soil after multiple applications
    • Wada, H., K. Senoo, and Y. Takai. 1989. Rapid degradation of γ-HCH in upland soil after multiple applications. Soil Sci. Plant Nutr. 35:71–77.
    • (1989) Soil Sci. Plant Nutr. , vol.35 , pp. 71-77
    • Wada, H.1    Senoo, K.2    Takai, Y.3


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