Phylogeography of the copepod Tigriopus japonicus along the Northwest Pacific rim

Journal of Plankton Research

Volumn 31, Issue 2, 2009, Pages 209-221

  Ki, Jang Seu ^a   Lee, Kyun Woo ^a   Park, Heum Gi ^b   Chullasorn, Supawadee ^c   Dahms, Hans Uwe ^d   Lee, Jae Seong ^a  

^a Hanyang University   (South Korea)

^b Gangneung Wonju National University   (South Korea)

^c RAMKHAMHAENG UNIVERSITY   (Thailand)

^d NATIONAL TAIWAN OCEAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

COASTAL ZONE; CRUSTACEAN; CYTOCHROME; DNA; EVOLUTIONARY BIOLOGY; GENOME; GENOTYPE; GEOGRAPHICAL DISTRIBUTION; HYPOTHESIS TESTING; PHYLOGENETICS; PHYLOGEOGRAPHY; RELATEDNESS;

PACIFIC OCEAN; PACIFIC OCEAN (NORTHWEST);

COPEPODA; HARPACTICOIDA; MONSTRILLOIDA; SIPHONOSTOMATOIDA; TIGRIOPUS; TIGRIOPUS BREVICORNIS; TIGRIOPUS CALIFORNICUS; TIGRIOPUS JAPONICUS;

EID: 58549083131     PISSN: 01427873     EISSN: 14643774     Source Type: Journal    
DOI: 10.1093/plankt/fbn100     Document Type: Article

References (56)

1. Ara, K., Nojima, K. and Hiromi, J. (2002) Acute toxicity of Bunker A and C refined oils to the marine harpacticoid copepod Tigriopus japonicus Mori. Bull. Environ. Contam. Toxicol., 69, 104-110.
2. Bakker, F. T., Olsen, J. and Stam, W. T. (1995) Evolution of nuclear rDNA ITS sequences in the Cladophora albida/ sericea Clade (Chlorophyta). J. Mol. Evol., 40, 640-651.
3. Baldwin, B. G. and Markos, S. (1998) Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae). Mol. Phylogenet. Evol., 10, 449-463.
4. Barka, S., Pavillon, J. F. and Amiard, J. C. (2001) Influence of different essential and non-essential metals on MTLP levels in the copepod Tigriopus brevicornis.. Comp. Biochem. Physiol., 128C, 479-493.
5. Burton, R. S. (1997) Genetic evidence for persistence of marine invertebrate populations in an ephemeral environment. Evolution, 51, 993-998.
6. Burton, R. S. (1998) Intraspecific phylogeography across the point conception biogeographic boundary. Evolution, 52, 734-745.
7. Burton, R. S. and Lee, B. N. (1994) Nuclear and mitochondrial gene genealogies and allozyme polymorphism across a major phylogeographic break in the copepod Tigriopus californicus. Proc. Natl Acad. Sci. USA, 91, 5197-5201.
8. Burton, R. S., Metz, E. C., Flowers, J. M. et al. (2005) Unusual structure of ribosomal DNA in the copepod Tigriopus californicus: intergenic spacer sequences lack internal subrepeats. Gene, 344, 105-113.
9. Chen, C. A., Miller, D. J., Wei, N. W. V. et al. (2000) The ETS/IGS region in a lower animal, the seawhip, Junceella fragilis (Cnidaria: Anthozoa: Octocorallia): compactness, low variation and apparent conservation of a pre-rRNA processing signal with fungi. Zool. Stud, 39, 138-143.
10. Chi, S. C., Shieh, J. R. and Lin, S. J. (2003) Genetic and antigenic analysis of betanodaviruses isolated from aquatic organisms in Taiwan. Dis. Aquat. Organ., 55, 221-228.
11. Dahms, H. -U., Chullasorn, P., Kangtia, P. et al. (2007) Naupliar development of Tigriopus japonicus Mori, 1932 (Harpacticidae, Copepoda). Zool. Stud., 46, 541-554.
12. Damgaard, R. M. and Davenport, J. (1994) Salinity tolerance, salinity preference and temperature tolerance in the high-shore harpacticoid copepod Tigriopus brevicornis. Mar. Biol., 118, 443-449.
13. Davenport, J., Barnett, P. R. O. and McAllen, R. J. (1997) Environmental tolerance of three species of the harpacticoid copepod genus Tigriopus. J. Mar. Biol. Ass. UK, 77, 3-16.
14. Edmands, S. (1999) Heterosis and outbreeding depression in interpopulation crosses spanning a wide range of divergence. Evolution, 53, 1757-1768.
15. Edmands, S. (2001) Phylogeography of the intertidal copepod Tigriopus californicus reveals substantially reduced population differentiation at northern latitudes. Mol. Ecol., 10, 1743-1750.
16. Elder, J. F. J. and Turner, B. J. (1995) Concerted evolution of repetitive DNA sequences in eukaryotes. Q. Rev. Biol., 70, 297-320.
17. Ellison, C. K. and Burton, R. S. (2008) Interpopulation hybrid breakdown maps to the mitochondrial genome. Evolution, 62, 631-638.
18. Forget, J., Beliaeff, B. and Bocquené, G. (2003) Acetylcholinesterase activity in copepods (Tigriopus brevicornis) from the Vilaine River estuary, France, as a biomarker of neurotoxic contaminants. Aquat. Toxicol., 62, 195-204.
19. Forget, J., Pavillon, J. F., Menasria, M. R. et al. (1998) Mortality and LC50 values for several stages of the marine copepod Tigriopus brevicornis (Muller) exposed to the metals arsenic and cadmium and the pesticides atrazine, carbofuran, dichlorvos, and malathion. Ecotoxicol. Environ. Saf., 40, 239-244.
20. Ganz, H. H. and Burton, R. S. (1995) Genetic differentiation and reproductive incompatibility among Baja California populations of the copepod Tigriopus californicus. Mar. Biol., 123, 821-827.
21. Huelsenbeck, J. P. and Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
22. Huys, R., Llewellyn -Hughes, J., Olson, P. D. et al. (2006) Small subunit rDNA and Bayesian inference reveal Pectenophilus ornatus (Copepoda incertae sedis) as highly transformed Mytilicolidae, and support assignment of Chondracanthidae and Xarifiidae to Lichomolgoidea (Cyclopoida). Biol. J. Linn. Soc., 87, 403-425.
23. Huys, R., Llewellyn -Hughes, J., Conroy -Dalton, S. et al. (2007) Extraordinary host switching in siphonostomatoid copepods and the demise of the Monstrilloida: integrating molecular data, ontogeny and antennulary morphology. Mol. Phylogenet. Evol., 43, 368-378.
24. Itô, T. (1970) The biology of a harpacticoid copepod Tigriopus japonicus Mori. J. Fac. Sci. Hokkaido Univ. Zool., 17, 474-500.
25. Jeong, S. W., Lang, W. H. and Reeder, R. H. (1996) The release element of the yeast polymerase I transcription terminator can function independently of Reb1p. Mol. Cell Biol., 15, 5929-5936.
26. Johnson, M. P. (2001) Metapopulation dynamics of Tigriopus brevicornis (Harpacticoida) in intertidal rock pools. Mar. Ecol. Prog. Ser., 211, 215-224.
27. Jung, S. -O., Lee, Y. -M., Park, T. -J. et al. (2006) The complete mitochondrial genome of the intertidal copepod Tigriopus sp. (Copepoda, Harpacticidae) from Korea and phylogenetic considerations. J. Exp. Mar. Biol. Ecol., 333, 251-262.
28. Kellogg, E. (1998) Who's related to whom? Recent results from molecular systematics. Curr. Opin. Biol., 1, 149-158.
29. Ki, J. -S. and Han, S. (2007) Informative characteristics of 12 divergent domains in complete large subunit rDNA sequences from the harmful dinoflagellate genus, Alexandrium (Dinophyceae). J. Eukaryot. Microbiol., 54, 210-219.
30. Ki, J. -S., Jang, G. Y. and Han, S. (2004) Integrated method for single-cell DNA extraction, PCR amplification, and sequencing of ribosomal DNA from harmful dinoflagellates Cochlodinium polykrikoides and Alexandrium catenella. Mar. Biotechnol., 6, 587-593.
31. Kim, I. -C., Kim, Y. J., Song, S. J. et al. (2003) The intertidal harpacticoid copepod Tigriopus japonicus (Crustacea: Copepoda) β-actin gene: cloning, sequence and intraspecific variation. DNA Seq, 14, 279-284.
32. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
33. Kumar, S., Tamura, K., Jakobsen, I. B. et al. (2001) MEGA3: molecular evolutionary genetics analysis software. Bioinformatics, 17, 1244-1245.
34. Kwok, K. W. H. and Leung, K. M. Y. (2005) Toxicity of antifouling biocides to the intertidal harpacticoid copepod Tigriopus japonicus (Crustacea, Copepoda): effects of temperature and salinity. Mar. Pollut. Bull., 51, 830-837.
35. Lang, W. H. and Reeder, R. H. (1995) Transcription termination of RNA polymerase I due to a T-rich element interacting with Reb1p. Proc. Natl Acad. Sci. USA, 92, 9781-9785.
36. Lang, W. H., Morrow, B. E., Ju, Q. et al. (1994) A model for transcription termination by RNA polymerase I. Cell, 79, 527-534.
37. Lee, Y. -M., Kim, I. -C., Jung, S. -O. et al. (2005) Analysis of 686 expressed sequence tags (ESTs) from the intertidal harpacticoid copepod Tigriopus japonicus (Crustacea, Copepoda). Mar. Pollut. Bull., 51, 757-768.
38. Lee, K. -W., Raisuddin, S., Hwang, D. -S. et al. (2007a) Acute toxicities of trace metals and common xenobiotics to the marine copepod Tigriopus japonicus: evaluation of its use as a benchmark species for routine ecotoxicity tests in Western Pacific coastal regions. Environ. Toxicol., 22, 532-538.
39. Lee, Y. -M., Lee, K. -W., Park, H. et al. (2007b) Sequence, biochemical characteristics and expression of a novel sigma class of glutathione S-transferase of the intertidal copepod, Tigriopus japonicus with a possible role in antioxidant defense. Chemosphere, 69, 893-902.
40. Machida, R. J., Miya, M. U., Nishida, M. et al. (2002) Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar. Biotechnol., 4, 406-417.
41. Marcial, H. S., Hagiwara, A. and Snell, T. W. (2003) Estrogenic compounds affect development of harpacticoid copepod Tigriopus japonicus. Environ. Toxicol. Chem., 22, 3025-3030.
42. Marilley, M. and Pasero, P. (1996) Common DNA structural features exhibited by eukaryotic ribosomal gene promoters. Nucleic Acids Res, 24, 2204-2211.
43. Mason, S., Wallisch, M. and Grummt, I. (1997) RNA polymerase I transcription termination: similar mechanisms are employed by yeast and mammals. J. Mol. Biol., 268, 229-234.
44. Misitano, D. A. and Schiewe, M. H. (1990) Effect of chemically contaminated marine sediment on naupliar production of the marine harpacticoid copepod Tigriopus californicus. Bull. Environ. Contam. Toxicol., 44, 636-642.
45. Moss, T. and Stefanovsky, V. Y. (1995) Promotion and regulation of ribosomal transcription in eukaryotes by RNA polymerase I. Prog. Nucleic Acid Res. Mol. Biol., 50, 25-66.
46. Oakley, T. H. and Cunningham, C. W. (2002) Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proc. Natl Acad. Sci. USA, 99, 1426-1430.
47. Page, R. D. M. (1996) TREEVIEW: an application to display of phylogenetic trees on personal computers. Comp. Appl. Biosci., 12, 357-358.
48. Posada, D. and Crandall, K. A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
49. Raisuddin, S., Kwok, K. W. H., Leung, K. M. Y. et al. (2007) The copepod Tigriopus: a promising marine model organism for ecotoxicology and environmental genomics. Aquat. Toxicol., 83, 161-173.
50. Schizas, N. V., Street, G. T., Coull, B. C. et al. (1999) Molecular population structure of the marine benthic copepod Microarthridion littorale along the southeastern and Gulf coasts of the USA. Mar. Biol., 135, 399-405.
51. Schlötterer, C. (1998) Ribosomal DNA probes and primers. In Karp, A., Isaac, P. G. and Ingram, D. S. (eds), Molecular Tools for Screening Biodiversity. Chapman & Hall, London, pp. 267-276.
52. 2) modulate expression of glutathione reductase (GR) gene from the intertidal copepod Tigriopus japonicus. Aquat. Toxicol., 80, 281-289.
53. Seo, J. S., Lee, Y. -M., Park, H. G. et al. (2006b) The intertidal copepod Tigriopus japonicus small heat shock protein 20 gene (Hsp20) enhances thermotolerance of transformed Escherichia coli.. Biochem. Biophys. Res. Commun., 340, 901-908.
54. Song, S. J. and Chang, C. Y. (1993) Eight harpacticoid species of Harpacticidae (Copepoda, Harpacticoida) from Korea. Korean J. Syst. Zool., 9, 203-220.
55. Swofford, D. L. (2002) PAUP* 4.0: Phylogenetic Analysis Using Parsimony (* and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
56. Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.