Molecular evolution of HA1 in influenza a (H3N2) viruses isolated in Japan from 1989 to 2006

Intervirology

Volumn 51, Issue 6, 2009, Pages 377-384

  Saitoh, Mika ^a,b   Kimura, Hirokazu ^a,c   Kozawa, Kunihisa ^a   Shoji, Akira ^b  

^a Public Health and Environmental Sciences   (Japan)

^b GUNMA UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

Author keywords

Amino acid substitution; Hypervariable sites A and B; Influenza A (H3N2) virus; Long term season; Phylogenetic analysis

Indexed keywords

AMINO ACID; LYSINE; THREONINE;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; AUSTRALIA; CHINA; GENE; GENE AMPLIFICATION; GENE MUTATION; HA1 GENE; INFLUENZA; INFLUENZA VIRUS A H3N2; JAPAN; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS STRAIN;

AMINO ACID SEQUENCE; CELL LINE; EVOLUTION, MOLECULAR; GENETIC VARIATION; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA, HUMAN; JAPAN; LECTINS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID;

INFLUENZA A VIRUS;

EID: 58349093366     PISSN: 03005526     EISSN: None     Source Type: Journal    
DOI: 10.1159/000195635     Document Type: Article

References (22)

1. Wright PF, Neumann G, Kawaoka Y: Orthomyxoviruses; in Knipe DM, Howley PM, Griffin DE, Lamb RA, Straus SE, Martin MA, Roizman B (eds): Fields Virology, ed 5, revised. Philadelphia, Lippincott Williams & Wilkins, 2007, pp 1691-1740.
2. Okabe N, Yamashita K, Taniguchi K, Inoue S: Influenza surveillance system of Japan and acute encephalitis and encephalopathy in the influenza season. Pediatr Int 2000; 42: 187-191.
3. Sugaya N: Influenza-associated encephalopathy in Japan. Semin Pediatr Infect Dis 2002; 13: 79-84.
4. Wiley DC, Skehel JJ: The structure and function of the hemagglutinin membrane glycoprotein of influenza virus. Annu Rev Biochem 1987; 56: 365-394.
5. Watson JD, Hopkins NH, Roberts JW, Steitz JA, Weiner AM: Molecular Biology of the Gene, ed 4, revised. San Francisco, Benjamin Cummings Publishing Company, 1987.
6. Bizebard T, Gigant B, Rigolet P, Rasmussen B, Diat O, Bosecke P, Wharton SA, Skehel JJ, Knossow M: Structure of influenza virus haemagglutinin complexed with a neutralizing antibody. Nature 1995; 376: 92-94.
7. Wiley DC, Wilson IA, Skehel JJ: Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 1981; 289: 373-378.
8. Voet D, Voet JG: Biochemistry, ed 3, revised. Chichester, Wiley, 2004.
9. Fischmann TO, Bentley GA, Bhat TN, Boulot G, Mariuzza RA, Phillips SE, Tello D, Poljak RJ: Crystallographic refinement of the three-dimensional structure of the FabD1.3- lysozyme complex at 2.5-A resolution. J Biol Chem 1991; 266: 12915-12920.
10. World Health Organization: B. Isolation of influenza viruses, C. Isolation in cell culture. WHO Manual on Animal Influenza Diagnosis and Surveillance. Geneva, World Health Organization, 2002, pp 19-24.
11. Wright KE, Wilson GAR, Novosad D, Dimock C, Tan D, Weber JM: Typing and subtyping of influenza viruses in clinical samples by PCR. J Clin Microbiol 1995; 33: 1180-1184.
12. Nishida T, Kimura H, Saitoh M, Shinohara M, Kato M, Fukuda S, Munemura T, Mikami T, Kawamoto A, Akiyama M, Kato Y, Nishi K, Kozawa K, Nishio O: Detection, quantitation, and phylogenetic analysis of noroviruses in Japanese oysters. Appl Environ Microbiol 2003; 69: 5782-5786.
13. Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425.
14. Kimura M: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16: 111-120.
15. Kimura M, Hirayama M, Sakai H: Yobousessyu no tebiki (Manual of vaccination), ed 11, revised (in Japanese). Tokyo, Kindai Publishing Company, 2006.
16. Ministry of Health, Labour and Welfare: Influenza. Annual report 1992 national epidemiological surveillance of vaccine-preventable diseases (in Japanese). Tokyo, Ministry of Health, Labour and Welfare, 1994, pp 34- 66.
17. Lindstrom SE, Hiromoto Y, Nerome R, Omoe K, Sugita S, Yamazaki Y, Takahashi T, Nerome K: Phylogenetic analysis of the entire genome of influenza A (H3N2) viruses from Japan: evidence for genetic reassortment of the six internal genes. J of Virol 1998; 72: 8021-8031.
18. Shih SR, Chen GW, Yang CC, Yang WZ, Liu DP, Lin JH, Chiu SC, Chen HY, Tsao KC, Huang CG, Huang YL, Mok CK, Chen CJ, Lin TY, Wang JR, Kao CL, Lin KH, Chen LK, Eng HL, Liu YC, Chen PY, Lin JS, Wang JH, Lin CW, Chan YJ, Lu JJ, Hsiung CA, Chen PJ, Su IJ: Laboratory-based surveillance and molecular epidemiology of influenza virus in Taiwan. J Clin Microbiol 2005; 43: 1651- 1661.
19. Smith DJ, Lapedes AS, De Jong JC, Bestebroer TM, Rimmelzwaan GF, Osterhaus ADME, Fouchier RAM: Mapping the antigenic and genetic evolution of influenza virus. Science 2004; 305: 371-376.
20. Chi XS, Bolar TV, Zhao P, Tam JS, Rappaport R, Cheng SM: Molecular evolution of human influenza A/H3N2 virus in Asia and Europe from 2001 to 2003. J Clin Microbiol 2005; 43: 6130-6132.
21. National Institute of Infectious Diseases: Selection of vaccine strains for 2004/05 season in Japan (in Japanese). IASR 2004; 25: 238- 239.
22. Daum LT, Shaw MW, Klimov AI, Canas LC, Macias EA, Niemeyer D, Chambers JP, Renthal R, Shrestha SK, Acharya RP, Huzdar SP, Rimal N, Myint KS, Gould P: Influenza A (H3N2) outbreak, Nepal. Emerg Infect Dis 2005; 11: 1186-1191.