-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen,C.B. (1973) Principles that govern the folding of protein chains. Science, 181, 223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
4
-
-
2942522713
-
PASS2: An automated database of protein alignments organised as structural superfamilies
-
Bhaduri,A. et al. (2004) PASS2: An automated database of protein alignments organised as structural superfamilies. BMC Bioinformatics 5, 35.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 35
-
-
Bhaduri, A.1
-
5
-
-
3042644660
-
Regions of minimal structural variation among members of protein domain superfamilies: Application to remote homology detection and modeling using distant relationships
-
Chakrabarti,S. and Sowdhamini,R. (2003) Regions of minimal structural variation among members of protein domain superfamilies: Application to remote homology detection and modeling using distant relationships. FEBS Lett., 569, 31-36.
-
(2003)
FEBS Lett
, vol.569
, pp. 31-36
-
-
Chakrabarti, S.1
Sowdhamini, R.2
-
6
-
-
0345600220
-
SMoS: A database of structural motifs of superfamily
-
Chakrabarti,S. et al. (2003) SMoS: A database of structural motifs of superfamily. Protein Eng., 16, 791-793.
-
(2003)
Protein Eng
, vol.16
, pp. 791-793
-
-
Chakrabarti, S.1
-
7
-
-
33748933404
-
SSToSS - sequence-structural templates of single-member superfamilies
-
Chakrabarti,S. et al. (2006) SSToSS - sequence-structural templates of single-member superfamilies. In Sillico Biol., 6 0029.
-
(2006)
In Sillico Biol
, vol.6
, pp. 0029
-
-
Chakrabarti, S.1
-
8
-
-
0027122748
-
Proteins. One thousand families for the molecular biologist
-
Chothia,C. (1992) Proteins. One thousand families for the molecular biologist. Nature, 357, 543-544.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
9
-
-
0034775160
-
Role of conserved residues in structure and stability: Tryptophans of human serum retinol-binding protein, a model for the lipocalin superfamily
-
Greene,L.H. et al. (2001) Role of conserved residues in structure and stability: Tryptophans of human serum retinol-binding protein, a model for the lipocalin superfamily. Protein Sci., 10, 2301-2316.
-
(2001)
Protein Sci
, vol.10
, pp. 2301-2316
-
-
Greene, L.H.1
-
10
-
-
0027361123
-
A structural basis for sequence comparisons. An evaluation of scoring methodologies
-
Johnson,M.S. and Overington,J.P. (1993) A structural basis for sequence comparisons. An evaluation of scoring methodologies. J. Mol. Biol. 233,716-738.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 716-738
-
-
Johnson, M.S.1
Overington, J.P.2
-
11
-
-
0032892577
-
AAindex: Amino acid index database
-
Kawashima,S. et al. (1999) AAindex: Amino acid index database. Nucleic Acids Res., 27, 368-369.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 368-369
-
-
Kawashima, S.1
-
12
-
-
0000086449
-
Negatively correlated neural networks can produce best ensembles
-
Liu,Y. and Yao,X. (1997) Negatively correlated neural networks can produce best ensembles. Aust. J. Intell. Inf. Process. Syst., 4 176-185.
-
(1997)
Aust. J. Intell. Inf. Process. Syst
, vol.4
, pp. 176-185
-
-
Liu, Y.1
Yao, X.2
-
13
-
-
0033485370
-
Ensemble learning via negative correlation
-
Liu,Y. and Yao,X. (1999a) Ensemble learning via negative correlation. Neural Netw., 12, 1399-1404.
-
(1999)
Neural Netw
, vol.12
, pp. 1399-1404
-
-
Liu, Y.1
Yao, X.2
-
14
-
-
0033280266
-
Simultaneous training of negatively correlated neural networks in an ensemble
-
Liu,Y. and Yao,X. (1999b) Simultaneous training of negatively correlated neural networks in an ensemble. IEEE Trans. Syst. Man Cybern. B Cybern., 29, 716-725.
-
(1999)
IEEE Trans. Syst. Man Cybern. B Cybern
, vol.29
, pp. 716-725
-
-
Liu, Y.1
Yao, X.2
-
15
-
-
0030334834
-
Structure of the transition state for folding of the 129 aa protein chey resembles that of a smaller protein, ci2
-
Lopez-Hernandez,E. and Serrano,L. (1996) Structure of the transition state for folding of the 129 aa protein chey resembles that of a smaller protein, ci2. Fold. Des., 1, 43-55.
-
(1996)
Fold. Des
, vol.1
, pp. 43-55
-
-
Lopez-Hernandez, E.1
Serrano, L.2
-
16
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin,L.J. et al. (2000) The PSIPRED protein structure prediction server. Bioinformatics, 16, 404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
-
17
-
-
0035957514
-
Evolutionary conservation of the folding nucleus
-
Mirny,L. and Shakhnovich,E. (2001) Evolutionary conservation of the folding nucleus. J. Mol. Biol., 308, 123-129.
-
(2001)
J. Mol. Biol
, vol.308
, pp. 123-129
-
-
Mirny, L.1
Shakhnovich, E.2
-
18
-
-
0031714858
-
JOY: Protein sequence-structure representation and analysis
-
Mizuguchi,K. et al. (1998) JOY: Protein sequence-structure representation and analysis. Bioinformatics, 14, 617-623.
-
(1998)
Bioinformatics
, vol.14
, pp. 617-623
-
-
Mizuguchi, K.1
-
19
-
-
0029144601
-
Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
-
Neuwald,A.F. et al. (1995) Gibbs motif sampling: Detection of bacterial outer membrane protein repeats. Protein Sci., 4, 1618-1632.
-
(1995)
Protein Sci
, vol.4
, pp. 1618-1632
-
-
Neuwald, A.F.1
-
20
-
-
23144434732
-
CAMPO, SCR_FIND and CHC_FIND: A suite of web tools for computational structural biology
-
Paiardini,A. et al. (2005) CAMPO, SCR_FIND and CHC_FIND: A suite of web tools for computational structural biology. Nucleic Acids Res. 33, W50-W55.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Paiardini, A.1
-
21
-
-
33645831409
-
Identification of similar regions of protein structures using integrated sequence and structure analysis tools
-
Peters,B. et al. (2006) Identification of similar regions of protein structures using integrated sequence and structure analysis tools. BMC Struct. Biol., 6, 4.
-
(2006)
BMC Struct. Biol
, vol.6
, pp. 4
-
-
Peters, B.1
-
22
-
-
34047122756
-
SMotif: A server for structural motifs in proteins
-
Pugalenthi,G. et al. (2007) SMotif: A server for structural motifs in proteins. Bioinformatics. 23, 637-638.
-
(2007)
Bioinformatics
, vol.23
, pp. 637-638
-
-
Pugalenthi, G.1
-
23
-
-
38549158429
-
MegaMotifBase: A database of structural motifs in protein families and superfamilies
-
Pugalenthi,G. et al. (2008a) MegaMotifBase: A database of structural motifs in protein families and superfamilies. Nucleic Acid Res., 36, D218-D221.
-
(2008)
Nucleic Acid Res
, vol.36
-
-
Pugalenthi, G.1
-
24
-
-
38749104235
-
Identification of catalytic residues from protein structure using support vector machine with sequence and structural features
-
Pugalenthi,G. et al. (2008b) Identification of catalytic residues from protein structure using support vector machine with sequence and structural features. Biochem. Biophys. Res. Commun., 367, 630634.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.367
, pp. 630634
-
-
Pugalenthi, G.1
-
25
-
-
44949092507
-
CUSP: An algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations
-
Sandhya,S. et al. (2008) CUSP: An algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations. BMC Struct. Biol., 8, 28.
-
(2008)
BMC Struct. Biol
, vol.8
, pp. 28
-
-
Sandhya, S.1
-
26
-
-
0028174103
-
Identification of sequence motifs from a set of proteins with related function
-
Saqi,M.A. and Sternberg,M.J. (1994) Identification of sequence motifs from a set of proteins with related function. Protein Eng., 7 165-171.
-
(1994)
Protein Eng
, vol.7
, pp. 165-171
-
-
Saqi, M.A.1
Sternberg, M.J.2
-
27
-
-
0347994105
-
FoldMiner: Structural motif discovery using an improved superposition algorithm
-
Shapiro,J. and Brutlag,D. (2004) FoldMiner: Structural motif discovery using an improved superposition algorithm. Protein Sci., 13, 278-294.
-
(2004)
Protein Sci
, vol.13
, pp. 278-294
-
-
Shapiro, J.1
Brutlag, D.2
-
28
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson,J.D. et al. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
-
29
-
-
1942502830
-
Catalytic and structural role of a metal-free histidine residue in bovine Cu-Zn Superoxide dismutase
-
Toyama,A (2004) Catalytic and structural role of a metal-free histidine residue in bovine Cu-Zn Superoxide dismutase Biochemistry, 43 4670-4679.
-
(2004)
Biochemistry
, vol.43
, pp. 4670-4679
-
-
Toyama, A.1
-
31
-
-
0034844341
-
Neural network ensembles and their application to traffic flow prediction in telecommunications networks
-
IEEE Press, Washington DC
-
Yao,X. et al. (2001) Neural network ensembles and their application to traffic flow prediction in telecommunications networks. In Proceedings of International Joint Conference on Neural Networks IEEE Press, Washington DC 1, pp. 693-698.
-
(2001)
Proceedings of International Joint Conference on Neural Networks
, vol.1
, pp. 693-698
-
-
Yao, X.1
|